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Flow cell separation in fluctuating g-fieldHan, Tian January 2015 (has links)
Field flow fractionation of particles in rotating coiled column has been investigated in recent year. In contrast to the classical mode of field flow fractionation in narrow channels, the use of rotating coiled columns offers the possibility of large sample loading. In this thesis, the potential for new cell separation methods based on the use of flow fractionation in fluctuating g-fields generated in rotating coil columns is examined. The effects of operational conditions (flow rate and rotational speed – Chapter 3 and Chapter 5); cell properties (cell flexibility – Chapter 4); and column shapes (different inner diameters and coil geometries – Chapter 6) on the flow behaviour of a model system of red blood cells (RBCs) from different species, which differ markedly in size, shape & density, flowing in a single phase of buffered saline have been characterised. Operational Conditions: For a particular rotational speed, there was a minimum flow rate which caused all the cells to be retained in the column and a maximum flow rate at which all cells were eluted. Both the minimum and maximum flow rate were increased when a higher rotational speed was applied. Differences in the behaviour of sheep & hen RBCs have been used to develop a separation method using a continuously increasing flow gradient. This separation could be speeded up by using a step flow gradient. The effects of cell load and rotational direction on the behaviour of RBCs in the column was also studied in this thesis. Cell Properties: The minimum flow rate was found to correlate with cell diameter/cell volume of the RBCs as expected for a sedimentation related process and was partially described by a theoretic equation developed for particles by Fedotov and colleagues (Fedotov et al. 2005). However cell dependent departures from this equation were found which appear to indicate that cell specific surface properties may also be involved for cells (Chapter 3). By contrast the maximum flow rate showed no correlation with cell diameter/cell volume. An effect of cell deformability on the flow separation behaviour of the cells has been demonstrated. Chemical fixation of sheep RBCs with glutaraldehyde rendered the normally deformable RBCs rigid and non-deformable and resulted in the fixed sheep RBCs eluting significantly earlier than unfixed sheep RBCs. This difference was great enough that a mixture of deformable (unfixed) and non-deformable (fixed) sheep RBCs could be separated. Fixed cells tended to show cell aggregation, which could be reduced by the addition of surfactant. Column Geometry: An effect of column shapes on the flow separation behaviour of cells has been demonstrated showing that the optimisation of column design is an important feature of this mode of cell separation. For columns with the same cross sectional area, a “horizontal” rectangular column provided better separation than a circular column and a “vertical” rectangular column gave the least efficient separation. A possible explanation for this behaviour is suggested the thinner sedimentation layer and less secondary flow. Differences in the behaviour of various species of RBCs in the “horizontal” rectangular column have been used to study the efficiency of separation of a mixture of sheep and hen RBCs, and a mixture of rabbit and hen RBCs. This work shows similarities and differences with other reports on cell/particle separations in rotating coiled columns in single phases and also in aqueous two phases systems (ATPS) and these are discussed. Fedotov P.S., Kronrod V.A. & Kasatonova O.N. (2005). Simulation of the motion of solid particles in the carries liquid flow in a rotating coiled column. J. Anal. Chem., 60, 4, 310-316.
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Bio-colloidal transfer in saturated and unsaturated porous media : influence of the physical heterogeneity of the porous medium and cell properties on bacteria transport and deposition mechanisms / Transfert bio-colloïdal dans des milieux poreux saturés et non-saturés : influence de l’hétérogénéité physique du milieu et des propriétés de cellules sur les mécanismes de transport et de dépôt bactérienBai, Hongjuan 26 January 2017 (has links)
La compréhension du transport et du dépôt bio-colloïdal dans un milieu poreux présente un grand intérêt dans les applications environnementales, en particulier pour le contrôle de la bio-remédiation des sols et la protection des ressources en eau souterraine. Afin de mieux évaluer et prévenir les risques de contamination de la nappe phréatique et de proposer des solutions adéquates de remédiation, il est nécessaire d’avoir une bonne compréhension des mécanismes qui contrôlent le transport et le dépôt des bactéries dans les milieux poreux saturés et non saturés. L’objectif des ces travaux de thèse est d’étudier le rôle de l’hétérogénéité physique du milieu poreux (distribution granulométrique, porosité…) et de l’hydrodynamique du milieu sur les mécanismes de transport et de dépôt de particules bio-colloïdales, tout en prenant en compte l’impact des propriétés de cellules bactériennes sur ces mécanismes. Des expériences de traçage et d’injection de suspensions bactériennes ont été menées à l’échelle de colonnes de laboratoire dans trois milieux poreux avec une porosité et une distribution de taille de pore distincte. Afin de caractériser l’écoulement dans les milieux poreux, un soluté non-réactif a été utilisé comme traceur de l’eau. Trois souches bactériennes ont été utilisées pour préparer les suspensions bactériennes : une bactérie mobile (Escherichia coli), et deux non mobiles (Klebsiella sp. et R. rhodochrous). La caractérisation des propriétés cellulaires (telles que la taille et la forme des cellules, le potentiel zêta, la motilité et l'hydrophobicité) a été effectuée pour chaque souche. Des simulations numériques ont été réalisées en utilisant le code de calcul HYDRUS-1D afin de modéliser l’écoulement et d’estimer les paramètres de transport et de dépôt des bactéries. Ces derniers ont été explorés afin d'identifier le mode de transport bactérien et les mécanismes physico-chimiques ou physiques impliqués dans le dépôt des bactéries. Des expériences supplémentaires à l'échelle des pores ont été réalisées à l'aide de dispositifs microfluidiques conçus à cet effet. Un calcul théorique des différentes interactions entre les bactéries et le milieu poreux aux interfaces air/eau/solide a été effectué pour compléter les résultats expérimentaux ainsi que ceux issus de la modélisation numérique. Ainsi, les énergies d’interactions telles que les forces de van der Waals, électrostatiques de double couche, hydrophobes, stériques, capillaires et hydrodynamiques, impliquées dans le dépôt de bactéries ont été calculées pour décrire les interactions bactéries-interfaces afin d'identifier leur impact relatif sur le dépôt physico-chimique et physique des bactéries. Les résultats expérimentaux et la modélisation numérique ont mis en évidence un écoulement non uniforme, dépendant de la taille des grains ainsi que de la distribution de la taille des pores du milieu poreux. Pour un milieu poreux donné, l’écoulement devient plus dispersif quand la teneur en eau du milieu diminue. Ceci est dû à l’augmentation de la tortuosité du milieu, du fait de la présence de l’air dans les pores. Le transport des bactéries diffère de celui du traceur de l’eau. Le dépôt bactérien a été fortement influencé par la géométrie du réseau poral du milieu, les propriétés cellulaires et le degré de saturation en eau. Le piégeage physique et physico-chimique sont des mécanismes qui doivent être pris en compte pour bien décrire le dépôt bactérien, mais leur importance sur les mécanismes de dépôt est étroitement liée aux propriétés du milieu poreux et des cellules. Ces travaux mettent en évidence l’effet simultané des propriétés cellulaires, des propriétés physiques (granulométrie et distribution de taille de pores) et de l'hydrodynamique du milieu poreux sur les mécanismes de transport et de dépôt bactérien. Le calcul des différentes énergies d’interaction a permis d’identifier leur importance sur les mécanismes de dépôt bactérien. / The investigation of the transport and retention of bacteria in porous media has a great practical importance in environmental applications, such as protection of the surface and groundwater supplies from contamination, risk assessment from microorganisms in groundwater, and soil bioremediation. The aim of this study is to gain a fundamental understanding of the mechanisms that control bacteria transport and deposition in saturated and unsaturated porous media. Laboratory tracer and bacteria transport experiments at Darcy scale were performed in three porous media with distinct pore size distribution in order to investigate and quantify water and bacteria transport process under steady state flow conditions. A conservative solute was used as water tracer to characterize water flow pathways through porous media. A gram negative, motile Escherichia coli, a gram negative, non-motile Klebsiella sp. and a gram positive, non-motile R. rhodochrous were selected for the transport experiments. Characterization of cell properties (such as cell size and shape, zeta potential, motility and hydrophobicity) was performed for each strain. Numerical simulations with HYDRUS-1D code were performed to characterize water flow and to estimate bacteria transport and deposition parameters. The later were explored to identify bacteria flow patterns and physicochemical or physical mechanisms involved in bacteria deposition. To provide a better understanding of the mechanisms involved on bacteria transport and deposition, pore scale experiments were carried out by using microfluidic devices, designed for this purpose. The information obtained from laboratory experiments and numerical modeling was improved by theoretical calculation of different interactions between bacteria and porous media at air/water/solid interfaces. DLVO and non-DLVO interactions such as hydrophobic, steric, capillary and hydrodynamic forces involved in bacteria deposition were considered to describe bacteria-interface interactions in order to identify their relative impact on physicochemical and physical deposition of bacteria. Results obtained through both laboratory experiments and numerical simulationsoutlined non-uniform flow pathways, which were dependent on both grain/pore size as well as pore size distribution of the porous media. For a given porous medium, water flow patterns became more non-uniform and dispersive with decreasing water saturation due to the presence of air phase, which lead to an increase of the tortuosity of the flow pathways under unsaturated conditions. Bacteria transport pathways were different from the tracer transport, due to size exclusion of bacteria from smaller pore spaces and bacteria motility. Bacteria deposition was greatly influenced by pore network geometry, cell properties and water saturation degree. Both physical straining and physicochemical attachment should be taken into account to well describe bacteria deposition, but their importance on bacteria deposition is closely linked to porous media and cell properties. The results obtained in this work highlighted the simultaneous role of cell properties, pore size distribution and hydrodynamics of the porous media on bacteria transport and deposition mechanisms. The calculation of DLVO and non-DLVO interactions showed that bacteria deposition in saturated and unsaturated porous media was influenced by both kinds of interactions.
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