Running title: Climbing fibers in myosin Va mutants

Pruning, the elimination of excess synapses is a phenomenon of fundamental importance for correct wiring of the central nervous system. The establishment of the cerebellar climbing fiber (CF)-to-Purkinje cell (PC) synapse provides a suitable model to study pruning and pruning-relevant processes during early postnatal development. Until now, the role of microglia in pruning remains under intense investigation. Here, we analyzed migration of microglia into the cerebellar cortex during early postnatal development and their possible contribution to the elimination of CF-to-PC synapses. Microglia enrich in the PC layer at pruning-relevant time points giving rise to the possibility that microglia are actively involved in synaptic pruning. We investigated the contribution of microglial fractalkine (CX3CR1) signaling during postnatal development using genetic ablation of the CX3CR1 receptor and an in-depth histological analysis of the cerebellar cortex. We found an aberrant migration of microglia into the granule and the molecular layer. By electrophysiological analysis, we show that defective fractalkine signaling and the associated migration deficits neither affect the pruning of excess CFs nor the development of functional parallel fiber and inhibitory synapses with PCs. These findings indicate that CX3CR1 signaling is not mandatory for correct cerebellar circuit formation. Main Points - Ablation of CX3CR1 results in a transient migration defect in cerebellar microglia. - CX3CR1 is not required for functional pruning of cerebellar climbing fibers. - Functional inhibitory and parallel fiber synapse development with Purkinje cells is undisturbed in CX3CR1-deficient mice.

La synaptogenèse est un processus précis : chaque type d'afférences innerve des domaines subcellulaires post-synaptiques spécifiques sur leur cible neuronale. Pour tester si cette spécificité est contrôlée par une combinaison unique de molécules à chaque synapse, j'ai utilisé le système olivo-cérébelleux comme modèle. Deux afférences excitatrices, les fibres parallèles issues des grains et les fibres grimpantes issues des neurones de l'olive inférieure, innervent des territoires distincts sur la même cible, la cellule de Purkinje. Une analyse comparative des profils d'expressions génique des grains et des neurones olivaires a montré que ces derniers expriment une plus grande diversité de protéines membranaires et sécrétées liées au système immunitaire. De plus, chaque type d'afférences exprime une combinaison spécifique de gènes liés à la voie du complément du système immunitaire inné. Parmi ceux-ci, la protéine sécrétée C1QL1, de la famille C1Q, joue un rôle instructif pour l'établissement du territoire d'innervation des fibres grimpantes sur les cellules de Purkinje. La protéine membranaire liée au complément SUSD4 assure, quant à elle, la maturation fonctionnelle et la stabilisation de ces synapses. Sachant que la protéine CBLN1 de la famille C1Q contrôle la synaptogenèse des fibres parallèles, ces résultats montrent que les différents membres de la famille C1Q sont des déterminants importants de l'identité et de la connectivité spécifique de chaque synapse excitatrice dans le cortex cérébelleux. Cette étude porte un nouvel éclairage sur l'hypothèse de la " chemoaffinité " et de sa participation à la formation de circuits neuronaux spécifiques et précis. / Synapse connectivity occurs in a precise manner such that no two types of afferents innervate the same postsynaptic subcellular domain. To test whether this specificity is controlled by a unique combination of molecules at each synapse, I used the olivo-cerebellar circuit as a model. There, two excitatory inputs, the Parallel fibers originating from granule cells and Climbing fibers originating from inferior olivary neurons, innervate distinct territories on the same target neuron, the Purkinje cell. Comparative gene expression analysis of these two inputs showed that the inferior olivary neurons express a greater diversity of genes encoding membrane and secreted proteins belonging to immune system-related pathways. Moreover, each input expresses a specific combination of complement-related genes. Among these, I identified the functional roles of two novel candidate genes specifically expressed by inferior olivary neurons. Secreted C1Q-related protein C1QL1 plays an instructive role in specifying Climbing fiber innervation territory on Purkinje cells, while membrane-bound complement control-related protein SUSD4 ensures the acquisition of proper functional properties of Climbing fiber synapses and their long-term stability. Given that C1Q-related CBLN1 promotes Parallel fiber synaptogenesis, these results show that different members of the C1Q family are important determinants of the identity and specific connectivity of each excitatory synapse in the cerebellar cortex. This study provides novel insights into the “chemoaffinity code” that controls subcellular specificity at each synapse type during the formation of neural circuits.

Synaptic plasticity describes efficacy changes in synaptic transmission and ranges in duration from tens to hundreds of milliseconds (short-term), to hours and days (long-term). Short-term plasticity plays crucial roles in synaptic computation, information processing, learning, working and short-term memory as well as its dysfunction in psychiatric and neurodegenerative diseases. The main aim of my PhD thesis was to determine the molecular mechanisms of different forms of presynaptic plasticity. Short-term facilitation increases neurotransmitter release in response to a high-frequency pair (paired-pulse facilitation; PPF) or train (train facilitation; TF) of presynaptic stimuli. Synaptotagmin 7 (Syt7) has been shown to act as residual calcium (Ca$_{res}$) sensor for PPF and TF at various synapses. Syt7 also seems to be involved in recovery from depression, whereas its role in neurotransmission remains controversial. My aim was to express Syt7 in a synapse where it is not normally found and determine how it affects short-term synaptic plasticity. Immunohistochemistry indicated that Syt7 is not localized to cerebellar climbing fibers (CFs). Wild-type (WT) and Syt7 knockout (KO) recordings at CF to Purkinje cell (CF-PC) synapses established that at near-physiological external calcium (Ca$_{ext}$) levels both genotypes displayed similar recovery from paired-pulse depression. In low Ca$_{ext}$,WT CF-PC synapses showed robust PPF, which turned out to be independent of Syt7. All my experiments strongly suggested that WT CFs do not express native Syt7, but display low Ca$_{ext}$ CF-PC PPF and TF. Thus, channelrhodopsin-2 and Syt7 were bicistronically expressed via AAV9 virus in CFs. This ectopic Syt7 expression in CFs led to big increases in low-Ca$_{ext}$ CF-PC facilitation, more than doubling PPF and more than tripling TF. While overexpression of Syt7 might turn out to have an effect on the initial release probability (pr), the observed CF-PC facilitation increase still critically depended on presynaptic Syt7 expression. And when comparing only cells in a defined EPSC1 amplitude range, the Syt7-induced increase in low-Ca$_{ext}$ PPF could not be accounted for by changes in initial pr, suggesting a general role for Syt7 as calcium sensor for facilitation. Another form of short-term plasticity, post-tetanic potentiation (PTP), is believed to be mediated presynaptically by calcium-dependent protein kinase C (PKC) isoforms that phosphorylate Munc18-1 proteins. It is unknown how generally applicable this mechanism is throughout the brain and if other proteins might be able to modulate PTP. Combining genetic (PKCαβy triple knockout [TKO] and Munc18-1SA knock-in [Munc18 KI] mice, in which Munc18- 1 cannot get phosphorylated) with pharmacological tools (PKC inhibitor GF109203), helped us show that PTP at the cerebellar parallel fiber to Purkinje cell (PF-PC) synapse seems to depend on PKCs but seems mostly independent of Munc18-1 phosphorylation. In addition, compared to WT animals, genetic elimination of presynaptic active zone protein Liprin-α3 led to similar PF-PC PTP and paired-pulse ratios (PPRs). At the hippocampal CA3-CA1 synapse previous pharmacological studies suggested that PKC mediates PTP. A genetic approach helped to show that calcium dependent PKCs do not seem to be required for CA3-CA1 PTP. Pharmacologically inhibiting protein kinase A as well as genetically eliminating Syt7 also had no effect on CA3-CA1 PTP. In addition, Ca IM-AA mutant mice, in which Ca$_{v}$2.1 channels have a mutated IQ-like motif (IM) so that it cannot get bound by calcium sensor proteins any more, not only displayed regular PTP, but also normal PPF and TF at CA3-CA1 synapses. In conclusion, my PhD thesis helped further characterize different forms of presynaptic plasticity, underlined that short-term synaptic plasticity can be achieved through diverse mechanisms across the Mammalian brain and supported a potentially general role for synaptotagmin 7 acting as residual calcium sensor for facilitation.