Habitat loss and climate change are major factors implicated in the decline of bumble bees worldwide. These factors may be particularly acute in regions subject to climatic extremes such as seasonal drought. Combining methods from pollinator research and phylogenetic community ecology, I investigated the impacts of seasonal drought on plant phenology and bumble bee community ecology across gradients of disturbance and soil moisture in a semi-arid ecosystem. Seasonal fluctuations in floral resources coincided with significant phylogenetic clustering in plant communities, with decreasing plant diversity observed under conditions of increasing drought stress. In the late season, modified wet areas supported higher floral resource availability and greater bumble bee abundances as compared to dry woodlands, though wetlands were also an important source of late season floral resources. Despite these local effects, however, the areal extent of natural vs modified matrix habitat accounted for the majority of variation in models explaining bumble bee abundances. Modified matrix habitat was negatively associated, and natural matrix habitat positively associated, with the occurrence of bumble bee workers in June and late-flying queens in July and August. Results provide insight into the temporal niche dynamics of entomophilous flowering plants in this system, and emphasize the importance of conserving natural habitat diversity in efforts to promote resilient plant-pollinator communities. This study also provides evidence for the local extinction of Bombus occidentalis Greene, 1858 and Bombus suckleyi Greene, 1860 from Galiano Island, BC, Canada, as well as the island’s recent colonization by Bombus vosnesenskii Radoszkowski, 1862. / Graduate

Bats (Chiroptera) are usually considered as a group greatly endangered by destructing their habitats through the human activity. However, a significant part of bat species at the central Europe use human buildings as shelters, moreover the natural shelters are marginal or unknown in several species. Considering the linkage of the great part of our bat species to the fragmented area and in connection with a long term human influence on the central european landscape we ask whether at least part of our species see human activity through providing proper shelters as positive. Based on the analysis of landscape structure and ruggedness effect on density, diversity and population structure of bat assamblages acquired by standardized mist net captures located in lowlands (elevations below 500 m) of Czech Republic (204 localities, 3585 bats, 22 bat species), we found that even though most of reactions were species specific and few species seemed to be positively associated with urban environments, most of the bat species rely on the broad-leaved forest cover and other natural habitats such as water bodies. The most significant factor influencing sexual segregation for bats was ruggedness of surrounding landscape. Keywords: Bats, Chiroptera, fragmentation, Europe, temperate zone

<p>Fish communities in agricultural headwater streams are known to be impacted by a variety of factors, including water chemistry, habitat modification, and hydrology. Little research has been conducted on how climate change influences these communities, yet the effects of climate on lake and river fish have been well documented. I hypothesized that fish community metrics would be reduced by the effects of climate change. I examined the effects of climate and hydrology metrics on fish communities at nine sites in the Saint Joseph River, Indiana and Michigan and at 18 sites in the Upper Big Walnut Creek, Ohio watersheds, from 2006 to 2019. Air temperature, water temperature, precipitation, water discharge, width, velocity, and depth metrics were calculated seasonally for each sampling year. Fish were examined seasonally with backpack electrofishing and seine netting and identified to species level. Principal component analyses were used to create axes which represented gradients of climate and hydrology metrics. Linear mixed effect and logistic regression modeling suggested that hydrology is a stronger predictor than climate, but that both influence fish communities. Percent Percidae, percent herbivore, and percent open substrate spawner were positively correlated with precipitation and water temperature. Presence herbivore was negatively correlated with precipitation and positively correlated with water temperature. My data only somewhat supported the hypothesis that climate would reduce fish community metrics. Gradients of hydrology were observed to be stronger predictors than gradients of climate. However, one must acknowledge relationships between climate and hydrology and the potential for climate to have indirect effects on fish communities through influences on hydrology. This study increases understanding of how fish communities in agriculturally dominated headwater streams are influenced, and emphasizes the need for further research on how these fishes will be impacted by a changing climate. </p>

<p>Aquatic macroinvertebrates of channelized headwater streams in agricultural landscapes are exposed to alterations in chemistry and physical characteristics of benthic sediments. These habitat alterations are known to influence communities of aquatic macroinvertebrates. Benthic sediments can have a wide range of impacts and influences on aquatic macroinvertebrates. I hypothesized that sediments would play a significant role in determining macroinvertebrate community structure within agriculturally dominated headwater streams. I evaluated the influences of sediment chemistry characteristics and physical characteristics on aquatic macroinvertebrate communities in Cedar Creek, Indiana and Michigan, and the Upper Big Walnut Creek, Ohio, during 2017 and 2018. Macroinvertebrates were collected twice per year using artificial substrate and leaf pack samplers and identified to the family level. Sediments were sampled two times per year and analyzed for seven physical characteristics and twenty sediment chemistry characteristics. Principle component analyses were used to create axes that are indicators of gradients of sediment chemistry and physical characteristics that occur among the samples. Macroinvertebrate community metrics used in the analyses included abundance, Shannon Diversity Index, Hilsenhoff Biotic Index scores, Invertebrate Community Index scores, percentage of collector-filters, percentage of scrapers, percentage of Chironomidae and a Berger-Parker Reciprocal Index of dominance. Linear Mixed Effect Model analyses revealed that both sediment chemistry and physical characteristics influence macroinvertebrate community metrics. Aquatic macroinvertebrate abundance was negatively correlated with increasing concentrations of simazine and decreasing concentrations of calcium. Percentages of Chironomidae were positively correlated with increasing percentages of sand and decreasing percentages of clay and decreasing diversity of sediment particle sizes. My data supported the hypothesis that benthic sediments play an important role in determining aquatic macroinvertebrate community structure in headwater streams of agriculturally dominated landscapes. Gradients of chemical characteristics containing simazine and calcium were observed to be negatively correlated with macroinvertebrate abundance. Gradients of physical characteristics including percentages of sand and clay along with the diversity of particle sizes were observed to be positively correlated with percentage of chironomids. My research increases the knowledge that benthic sediments, chemically and physically, can lead to alterations in aquatic macroinvertebrate communities within Midwestern headwater streams. </p>

In this thesis, I investigated the relationship between host and pathogen in multi-host and multi-pathogen systems at the interface between wildlife and domestic species. The term “epidemiological interaction” was central to my thesis, and was defined as “any ecological interaction between two host populations resulting in the transmission of one or more pathogen”. Epidemiological interactions are related to the processes of transmission between hosts and I investigated how these epidemiological interactions between different host populations could be investigated in a given ecosystem. I developed two research frameworks to estimate these epidemiological interactions: 1) an a priori approach based on the host data and assuming that the mobility of hosts and the resulting contacts between host populations would be crucial factors influencing the epidemiological interactions; 2) an a posteriori approach based on the pathogen data, assuming that epidemiological pathways previously used by some pathogen species can be used in the future by other pathogens. The animalpathogen model used to test the first approach was the bird-avian influenza viruses’ model. Longitudinal counting and sampling protocols of domestic and wild birds over two years were used to analyse community composition and abundance of hosts to compare with the prevalence of avian influenza viruses. I could, for the first time, show a persistence of low pathogenic avian influenza strains in an African ecosystem, and investigate the relationships with both the potential maintenance hosts (Afro-tropical ducks and resident species) and hosts that introduced the virus into the system from Europe or Asia (paleartic migrants). With the estimation of epidemiological interaction using host community data, I estimated the contact rate between wild and domestic avian compartments (intensive poultry, backyard and farmed ostrich compartments) and assigned a risk to this interaction based on dynamic and non dynamic factors for each bird species. This approach highlights the species or seasons at risk for the domestic compartments (or for the wild bird compartments depending on the perspective) in order to orientate surveillance or control options. This type of data and framework can also be used in mechanistic modelling to predict the spread of a pathogen after its introduction in one compartment. I tested the host approach in a broader dataset at the Southern African region level with similar counting and sampling database in multiple study sites, showing that the variability of host communities across the region could explain the variability of pathogen detection (however, finding a causal relationship was impossible). Finally, I theoretically developed the pathogen approach by combining tools used in parasite community ecology, molecular epidemiology and social network analysis and gave a theoretical example using a rodent and human macro and microparasite dataset. This thesis has explored the field of transmission ecology and offered ways to quantify the processes of transmission between host populations. Theoretically, I have developed a fundamental reflexion around epidemiological interactions and formulated hypotheses on their potential for being independent of the parasite species. Practically, I have developed tools to provide information for decision-making in order to improve efficiency of surveillance and control programmes at the wildlife/domestic interface particularly adapted to detect emerging infectious disease spill-over process. / Thesis (PhD)--University of Pretoria, 2011. / Zoology and Entomology / unrestricted

Niche partitioning is a major component in understanding community ecology and how ecologically similar species coexist. Temporal and spatial partitioning and differences in foraging strategy, including sensitivity to risk (variance), likely contribute to partitioning as well. Here, we approach this partitioning with fine resolution to investigate differences in overall strategy between two species of diurnal, orb-weaving spiders, Verrucosa arenata and Micrathena gracilis (Araneae: Araneidae), that share similar spatial positioning, temporal foraging window, and prey. Through field observation, we found that V. arenata individuals appear to increase spatial and temporal sampling to compensate for an overall risk-prone strategy that depends on the interception and active capture of rare, large prey. Conversely, M. gracilis individuals employ a risk-averse strategy relying on passive capture of small but abundant prey consumed alongside the orb. We have thus identified how differing risk-sensitive foraging strategies may contribute to niche partitioning between otherwise similar species.

North American prairie headwater streams are highly threatened and relatively poorly studied. Most studies on prairie streams have occurred at the Konza Prairie Biological Station, a tallgrass prairie Long Term Ecological Research site in the Flint Hills ecoregion near Manhattan, KS. According to the Stream Biome Gradient Concept, several ecosystem factors vary along a gradient from more allochthonous forested streams to more autochthonous desert streams, with grassland streams often intermediate in several key ecological factors including litter inputs, primary production, and invertebrate abundance and biomass. However, few studies have examined the degree of variation that exists within prairie headwater streams, and whether this variation occurs along a longitudinal gradient as well, with more mesic tallgrass prairie streams differing from more xeric shortgrass prairie streams, and mixed-grass sites intermediate between the two. I examined thirteen prairie headwater stream sites in the central United States from 2014 to 2017. My objective was to determine whether basal resource composition – including standing stocks of coarse particulate organic matter (CPOM), fine particulate organic matter (FPOM), and very fine particulate organic matter (VFPOM), sestonic and benthic chlorophyll-a levels, and sources of CPOM – differed significantly among streams in tallgrass, mixed-grass, and shortgrass prairie regions. In addition, I examined whether invertebrate communities differed among tallgrass, mixed-grass, and shortgrass prairie regions, and whether this was reflected in the functional feeding group composition, habit composition, voltinism, and dispersal ability of invertebrate communities. There were no significant differences in total CPOM, FPOM, and VFPOM standing stocks among regions. However, CPOM composition did differ with region, with tallgrass sites having higher standing stocks of leaf litter, but lower standing stocks of grass litter and macrophyte litter than the other regions. Benthic chlorophyll-a did not differ significantly among regions, but there were lower sestonic chlorophyll-a levels in tallgrass sites. Given higher light availability and nutrient levels in shortgrass and mixed-grass streams, lack of stable substrata may be limiting benthic algae in these regions. Invertebrate abundance and biomass were highest in mixed-grass sites and lowest in tallgrass sites, with shortgrass sites intermediate. Mixed-grass sites also had significantly higher Shannon diversity and taxa richness than tallgrass sites. A NMDS revealed that sites differed in overall community structure. Functional feeding group composition did not differ significantly across regions, with collector-gatherers, followed by predators, dominating in all sites. High Predator-Prey Index (predator biomass: other invertebrate biomass) values in each region indicates strong top-down pressure and high turnover rates of prey taxa. While there was a weak correlation between leaf litter AFDM and invertebrate community structure, the correlation between latitude and longitude and invertebrate community structure was much higher, indicating that basal resources may not be the main drivers in these systems. Invertebrate habit composition did not differ with region; all regions were dominated by taxa preferring fine substrata (burrowers and sprawlers). All regions showed selection against semivoltine invertebrates and were dominated by high dispersing insect taxa, though the proportion of the insect community that consisted of high dispersers did not differ significantly with region. My results suggest that generalizing about prairie streams based on studies from one or a handful of sites may not be prudent, at least for some aspects. The higher proportion of autochthonous inputs in shortgrass and mixed-grass regions may drive increased invertebrate abundance, biomass, richness, and diversity, but the relative hydrologic stability of the mixed-grass sites might also explain these results or have an interactive or additive relationship with primary production. Overall, the link between basal resources and communities across prairie types was somewhat weak, and all regions were dominated by collector-gatherers with rapid life-cycles and high dispersal abilities, indicating that disturbance may be a more important community filter than basal resource composition. Streams in all three regions have highly variable hydrology, and this may be an overriding factor that results in similarity in communities.

Many reef fishes initially recruit into mangroves, and then migrate out to reef habitats as they grow and mature. Each ontogenetic habitat shift exposes migrants to previously unencountered parasite taxa, potentially increasing parasite species richness and driving changes in parasite community structure. However, studies on this topic rarely attempt to distinguish between the location effects of habitat shifts versus a simple increase in physical size. Therefore we contrasted parasite community richness and structure in Great Barracuda Sphyraena barracuda (N=84), Atlantic Needlefish Strongylura marina (N=49), Crevalle Jack Caranx hippos (N=59), White Mullet Mugil curema (N=90), and Yellow-fin Mojarra Gerres cinnerus (N=60) from three locations: mangrove, inshore seagrass beds, and offshore reef habitats. Mullet harbored the highest species richness (S=26, mean infracommunity S=2.4±1.6) and Atlantic Needlefish the lowest (S=8, mean infracommunity S=0.5±0.8). A global model including species, location, and size class was significant (R2=0.654, DF 17, F=35.91, p

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