Thesis (Ph.D. (Physics)) -- University of Limpopo, 2016 / Refer to the document / National Research Foundation

Thesis (MSc.) (Physics) --University of Limpopo, 2007 / Molecular dynamics simulations have been carried out in order to examine the mechanism of diffusion of molecules in amorphous polymer matrix. PDMS model was folded in to a periodic cell, generated by rotational isomeric state (RIS) method at a prescribed temperature and density. Molecular dynamics was used to study transport properties of cyclic PDMS oligomers (hexa-methylcyclotrisiloxane (D3), octa-methylcyclotetrasiloxane (D4) and deca-methylcyclopentasiloxane (D5) using Dreiding and COMPASS force fields. Diffusion coefficients were calculated from the Einstein relation. Only D3 penetrant reached the long time limit from which the Einstein relation is satisfied. Analysis of displacement versus time for all the penetrants in PDMS matrix indicates that the penetrant motion is characterized by relatively long periods interspersed with fairly long and small jumps. Transport of solvent molecules occurs by jumps between individual sections of free volume (cavity/hole) through temporarily open channels. / The National Research Foundation (NRF) and Eskom

Thesis (Ph.D. (Physics)) --University of Limpopo, 2011 / The importance of gold for scientific uses is of fundamental importance to research and technology developments. The bulk gold shows reluctance to participate in chemical reactions, the effect which has been corrected by the change in the size towards nanoclusters. It is therefore imperative that the structure of gold nanomaterials is understood for better applications in catalysis and other developments. Molecular dynamics and the density functional theory have proven to be good tools in computational material science and have thus been used to greater lengths. Molecular dynamics simulations on different gold nanoclusters and nanotubes were successfully carried out at different thermodynamic conditions. The effect of size on the melting of materials was duly tested and our results to some extend agree with what has already been reported. Gold nanoclusters show melting below the bulk and the melting temperatures increase with cluster size. However, the Au55 cluster shows different results in that it melts above the bulk due to structural reconstruction. The structure of the clusters changes from spherical shapes to tetragonal or face centred cubic (fcc) structures. Gold nanotubes show no resistance to temperature and different configurations are obtained in different ensembles. Single wall nanotubes form spherical clusters in the NVT while the NPT conditions give patches of clusters at elevated temperatures. The multi wall nanotubes also form spherical clusters in the NVT but fcc structures are obtained in the NPT Berendsen ensemble towards melting. Ab initio calculations in DMOL3 code on different gold nanoclusters show the stability of the clusters to increase with size and the Au3 and Au8 clusters contain the most stable structures. The Au-Au bond length in the dimer was obtained to within reasonable agreement with experiments and other theoretical works. Doping of the clusters further improved their stability although different impurities give different observations. The QMERA code calculations show that a gold atom on top of the surface causes slanting of the outer MD layers. The morphology of the quantum atoms also changes as compared to the neutral surface and the results are compared by the DMOL3 code which confirms the QMERA results. / Mintek, and the National Research Foundation