Morphology is the origin of life and function. Defining and designing morphology, understanding the relationship between morphology and function, is an essential theme in a number of research areas. In conjugated polymer research, the major obstacles to achieving these goals are the heterogeneity and complexity of conjugated polymer films. In the study presented in this dissertation, various single molecule spectroscopy techniques were used as an approach to minimize the complexity of these problems. By using excitation polarization spectroscopy, it was discovered that single chains of poly[2-methoxy-5-(2'-ethylhexyloxy)-1,4-phenylenevinylene] (MEH-PPV) assume a highly ordered rod conformation despite the fact that the morphology of bulk films is known to be amorphous. The comparison of results from experiments and a coarse grained bead-on-a-chain simulation suggested that single chains have the ability to use a thermally induced defect to maximize [pi]-[pi] stacking and adopt a rod conformation as a stable conformation. Bias-induced centroid spectroscopy (BIC) on highly ordered single chains demonstrated that the energy transfer scale could be an order of magnitude larger than the value typically measured for bulk films. It was further demonstrated that such an extraordinary long energy transfer was not a unique property of single chains but was also observed in aggregates as long as the morphology was ordered. These studies were extended to another model compound poly(3-hexylthiophene) (P3HT) to generalize the mechanism of morphology formation and the structure-property relationship. For P3HT, it was shown that side-chains were a very important factor in determining single chain conformation, while the conformation of MEH-PPV was not affected by side-chains. By controlling the side-chains, both ordered and disordered P3HT chains were obtained. The comparison of results from experiments and an energy transfer model simulation quantified that energy transfer was at least twice as efficient in ordered chains as in disordered chains. In aggregates, the difference between the energy transfer efficiency of ordered and disordered morphology was even larger than that in the case of single chains. These results could suggest that there is a very fast energy transfer mechanism that occurs through interchain interactions when chains are packed in ordered fashion. / text

A series of low band-gap conjugated polymers with intramolecular charge transfer properties were synthesized and bulk heterojunction devices based on these polymers were fabricated. The electrochemical and photophysical properties of the polymers were tuned by using different electron withdrawing molecules or ruthenium complexes as the comonomer. Preliminary results suggested that the electronic structures of the polymer were significantly altered by the incorporation of different acceptor units. The polymers also demonstrated intense absorption bands in the visible region, indicating that they are suitable photoactive materials in bulk heterojunction devices. The synthesis and characterization of a series of organic donor-acceptor copolymers were studied. All of the polymers contained alternating cyclopenta[2,1- b:3,4-b’]dithiophene (CPDT) units. The effects of the different acceptor monomers were evaluated. The electron-withdrawing carboxylate and amide functional groups of the acceptors were found to effectively stabilize the HOMO levels of the polymer, and the optical band-gaps were significantly reduced. Bulk heterojunction devices were fabricated using the polymers and 6,6-phenyl C61 butyric acid methyl ester (PCBM) as donors and acceptors respectively. These devices exhibited high open circuit voltage (Voc) up to 0.86 V. The extended photosensitizing range was confirmed by the external quantum efficiency (EQE) spectra. The device performance was further improved by optimizing the active layer thickness and applying 1,8-diiodooctane in the blend solution. A new synthetic route to novel ruthenium containing polymers was also reported. [Ru(L)(L’)Cl2] complexes (L and L’ = bidentate N^N ligands) with a dibromo-substituted ligand were found to be polymerizable by Stille cross-coupling reaction. The subsequent displacement of the chloride ligands by thiocyanate was highly effective and the structures of the target polymers were fully characterized. The main chain absorption showed a significant red-shift upon metal coordination and the metal-to-ligand charge transfer (MLCT) of the complex strengthens the photon harvesting ability of the polymer. The dual function of these Ru(II) complexes demonstrated a new avenue to develop new classes of optoelectronic materials. The extent of _-delocalization of the ancillary ligands also showed interesting effects on the electronic properties of the polymers. Bulk heterojunction devices were fabricated. Photovoltaic response was observed in these devices, and the device performance can be improved by further modifying the surface morphology of the blend films. / published_or_final_version / Chemistry / Master / Master of Philosophy

The effects of chain conformation on the photo-oxidation and green emission of poly(9,9-dioctylfluorenyl-2,7-diyl) (PFO) are investigated at both single molecule and ensemble levels. Single molecule studies reveal the conformation of PFO chains to be more globular when cast from THF than from toluene. Intensity transients of single molecules show that the elongated molecules cast from toluene have more fluctuations due to a fewer number of emitting centers on the polymer. Photochemical degradation leads to intensity fluctuations for the elongated molecules, while the globular chains show monotonic decays. Emission spectra of the single molecules show that photochemical oxidation leads to reduction in the emission of the molecule with no change in the emission spectra. No green emission is detected for single molecules indicating that formation of emissive ketone defects occurs rarely. Ensemble studies show that molecule cast from THF develop some green emission upon photodegredation while those cast from toluene don't. The increase in green in the globular molecules suggests that interchain contacts are necessary for the photochemical formation of emissive ketone defects in the PFO. All emission spectra of the aggregated and nonaggregated PFO during photooxidation are also analyzed by using a modified FranckCondon progression model with an additional independent Gaussian component and fitting results from single PFO spectrum. While emission spectrum of single PFO molecule shows a good fitting result to the model, the other two bulk PFO films display needs to introduce an additional term for better fit. This additional independent Gaussian component implies that green emission comes from non-Franck-Condon process. Rotational dynamics of poly(methyl acrylate) is investigated by single molecule spectroscopy. Polarized fluorescence transients from single rhodamine 6G dye embedded in polymer matrix above glass transition are analyzed and the correlation function of reduced linear dichroism is fit by a stretched exponential function. The fitting results suggest that non-exponential decay of correlation function. However, more rigorous study is needed because of the intrinsic statistical error of limited experimental data and the effect of high numerical objective.

Three experiments were conducted for this dissertation with the goals to; 1) determine conjugated linoleic acid (CLA) effects on net-energy balance (EBAL) and milk production parameters during periods of nutrient/energy stress, and 2) investigate temporal CLA effects on mammary lipogenic gene expression. Study one was designed to determine if abomasal CLA infusion could reduce milk fat synthesis and partition nutrients towards alternative milk components in feed restricted rotationally grazed dairy cows. Data indicate abomasally-infusing CLA reduced milk fat synthesis in nutrient restricted grazing dairy cows and improved calculated EBAL and milk protein production. Another period of transitory stress experienced by the lactating dairy cow is immediately postpartum and study two objectives were to feed rumen inert-CLA to evoke milk fat depression (MFD) and investigate production and bioenergetic parameters. Data indicated a high CLA dose (3 x greater than needed in established lactation) inhibited milk fat synthesis immediately postpartum and improved calculated EBAL in grazing dairy cows. A curvilinear relationship existed between the severity of CLA-induced MFD and milk yield response. Moderate CLA-induced MFD (<~35%) tended to increase milk yield whereas severe MFD (>~35%) diminished this response. Previous research speculated that extensive MFD might decrease Δ⁹-desaturase (stearoyl CoA desaturase; SCD) and subsequent membrane fluidity to such an extent as to adversely affect cellular functions and inhibit milk secretion, thus decreasing milk yield. However, SCD inhibition was temporally independent in the present study, offering little support for the aforementioned theory. Mammary sensitivity to CLA increased as lactation progressed and previous speculations attributed this to reduced contribution of de novo synthesised fatty acids or increased competition from circulating non-esterified fatty acids immediately postpartum. However, data indicate that de novo fatty acids and milk fat trans-10, cis-12 CLA content don’t appreciably change during early lactation, (even though MFD became more severe) offering little support for either hypothesis. Study three investigated the effects of intravenous CLA infusion on temporal expression of mammary lipogenic genes to determine if trans-10, cis-12 CLA down regulates expression of a key gene (i.e. acetyl CoA carboxylase, ACC, the rate limiting enzyme in de novo fatty acid synthesis) and reduction in other mammary lipid synthesis genes is due to lack of substrate (i.e. malonyl CoA), or an alternative indirect mechanism. Data indicated however, that mammary lipogenic genes (ACC, fatty acid synthetase and SCD) followed a similar temporal pattern, providing more support for a global regulator (i.e. sterol regulatory element binding protein-1, peroxisome proliferator-activated receptor-γ or nuclear factor- κB) rather than a specific key enzyme effect.

Microcontact printing using elastomeric stamps is a technique used in finding new and efficient ways to produce biodetection chips. Microcontact printed, with poly(dimetylslioxane) (PDMS) stamps, patterns of antibodies have been evaluated using fluorescence microscopy, imaging ellipsometry and atomic force microscopy. Fluorescent conjugated polyelectrolytes form non-covalent molecular complexes with Immunoglobulin-γ type antibodies, antigen binding to the tagged antibody result in spectroscopic shifts. Four different conjugated polyelectrolytes (POWT, POMT, PTT, PTAA) in complex with human serum albumin antibodies (aHSA) have been tested with fluorescence spectroscopy. Complexes of POWT and aHSA gave rise to thelargest wavelength shift when exposed to human serum albumin. Several types of commercially available fluorescent antibodies and antigens were used to test the specificity of microcontact printed antibodies to different antigen solutions. Using fluorescence microscopy it could not be shown that printed antibody patterns promote specific adsorption of corresponding antigen. It is proposed however that changed surface characteristics of the substrate due to PDMS residues transferred during printing is the main driving force behind antigen adsorption. POMT - poly (3-[(s)-5-amino-5-methoxylcarboxyl-3-oxapentyl]-2,5-thiophenylenehydrochloride) POWT - poly (3-(s)-5-amino-5-carboxyl-3-oxapentyl]-2,5-thiophenylenehydrochloride) PTAA - polytiophene acetic acid PTT - poly (3-[2,5,8-trioxanonyl] thiophene)

Alzheimer’s disease is the most common cause of dementia and was responsible for over 2% of all deaths in Sweden 2012. One of the pathological hallmarks is amyloid plaques built by fibrillated Amyloid β. Luminescent conjugated oligothiophenes are known to stain and give characteristic fluorescence spectra when staining amyloid fibrils. Little is however known about the interactions between LCOs and fibrils. Studies have been performed on molecules more traditionally known to stain amyloid fibrils. Studies have also been performed on fibrils using limited proteolysis. So far no studies have been performed using LCOs combined with limited proteolysis in order to study the interaction pattern between LCOs and fibrils. Amyloid β is expressed and purified using a simple few step purification protocol. The amyloid β peptide was then fibrillated in several generations in order to select for a homogenous fibril structure. This purification protocol also has the ability to purify different oligomers of Amyloid β that are interesting from a toxicity point of view. In this thesis optical characteristics and limited proteolysis with mass spectrometry are being used to studies the interactions between LCOs and fibrillated amyloid β. The proteolytic pattern was suggestive of an accessible N-terminal and a hidden C-terminal of Amyloid β M1-42 in the fibril. It was also shown that the proteolysis cleavage pattern of Chymotrypsin is not disrupted when the LCO pKTAA was used to stain fibrils. The emission spectra from the two LCOs pATAA and pKTAA changes differently when subjected to continuous excitation indicative of conformational changes or chemical modification.

The objectives of this study was to examine the efficacy and safety of graded doses of c9, t11, t10, c12 CLA isomers on body composition, energy expenditure, lipid profile and hepatic biomarkers in hamsters. Male Golden Syrian hamsters (n=105) were randomized to seven treatments (control; 1, 2, 3% of c9, t11; 1, 2, 3% of t10, c12) for 28 days. Compared with control, 1% and 3% t10, c12 had lowered food intake with all three doses of t10, c12 lowering (p<0.0001) body fat mass (g). Groups fed with 1, 2, 3% t10, c12 and 3% c9, t11 treatments showed higher lean mass compared to control and other treatment groups. However, neither body weights, nor serum HDL or triglyceride levels differed across treatment groups. The 3% t10, c12 groups exhibited higher (p<0.0001) cholesterol and LDL-C levels compared to control or other treatment groups. The 2% and 3% t10, c12 groups also presented elevated ALT level (p<0.05). The present data suggest that 3% t10, c12 possess potential adverse effects on liver and posing unfavorable change in lipid profile.

The olefin metathesis reaction has become one of the most powerful carbon-carbon bond forming reaction in synthetic chemistry. This work has expanded the utility of olefin metathesis in metal coordination spheres in three major directions (1) the synthesis and characterization of trans-spanning bis(pyridine)PtCl2 complexes, (2) the developme-adducts of polyacetylene (PA), and (3) the development of regioregular -adducts of poly(phenylene-vinylene) (PPV). Chapter I gives a brief overview of olefin metathesis and previous applications to organometallic substrates. Chapter II details the synthesis of pyridine ligands containing alkenyl substituents, 2-NC5H4(CH2O(CH2)nCH=CH2) (n = 1, 2), 3-NC5H4(CH2O(CH2)nCH=CH2) (n = 1-5, 8, 9), and 3,5-NC5H3(p-C6H4O(CH2)7CH=CH2)2. Metalation of the new ligands with PtCl2 affords the corresponding trans-bis(pyridine)dichloroplatinum complexes, trans-PtCl2(2-NC5H4(CH2O(CH2)nCH=CH2))2 (n = 1, 2), trans-PtCl2(3-NC5H4(CH2O(CH2)nCH=CH2))2 (n = 1-5, 8, 9), and trans-PtCl2(3,5-NC5H3(p-C6H4O(CH2)7CH=CH2))2. Ring-closing metathesefirst generation catalyst followed by hydrogenations with Pd/C afford the title complexes trans-PtCl2-(NC5H4(CH2O(CH2)2n+2OCH2)H4C5N)] (n = 1, 2), trans-PtCl2-(NC5H4(CH2O(CH2)2n+2OCH2)H4C5N)] (n = 4, 8, 9), and trans-PtCl2-(NC5H3(p-C6H4O(CH2)12O-p-C6H4)2H3C5N)]. Reactions with methylmagnesium bromide afford trans-PtCl(CH3)(3-NC5H4(CH2O(CH2)nCH=CH2))2 (n = 2, 8) and trans-PtCl(CH3-(NC5H4(CH2O(CH2)nOCH2)H4C5N)] (n = 10, 18), which feature dipolar rotators. Low temperature NMR spectra in the latter remained facile on the NMR time scale in CDFCl2 at -120 degrees Celsius. Chapter III focuses on the application of ROMP with organometallic monomers to form metal pi-adducts of polyacetylene. The new complex (n4-benzene)Cp*Ir has been synthesized, crystallographically characterized, and evaluated in the ROMP reaction. Monomers (n4-benzene)CpIr, [(n6-COT)CpRu][PF6], and (n4-COT)Fe(CO)3 were also evaluated in the ROMP reaction. ROMP of (?4-benzene)CpIr with Grubbs' first generation catalyst afforded the conductive regioregular polymer CpIr-PA. Chapter IV focuses on the synthesis of the divinyl benzene complexes [Cp*Ir(C6H4(CH=CH2)2)][BF4]2 and [Cp*Ru(C6H4(CH=CH2)2)][OTf] and their polymerization via ADMET to afford PPV systems. Treatment of divinyl benzene ed the conductive regioregular polymers [Cp*Ir-PPV][BF4]2n and [Cp*Ru-PPV][OTf]n. The photophysical properties of the new -metal adducts of PPV exhibit blue-shifts relative to typical PPVs and retain strong UV absorption.

The objectives of this study was to examine the efficacy and safety of graded doses of c9, t11, t10, c12 CLA isomers on body composition, energy expenditure, lipid profile and hepatic biomarkers in hamsters. Male Golden Syrian hamsters (n=105) were randomized to seven treatments (control; 1, 2, 3% of c9, t11; 1, 2, 3% of t10, c12) for 28 days. Compared with control, 1% and 3% t10, c12 had lowered food intake with all three doses of t10, c12 lowering (p<0.0001) body fat mass (g). Groups fed with 1, 2, 3% t10, c12 and 3% c9, t11 treatments showed higher lean mass compared to control and other treatment groups. However, neither body weights, nor serum HDL or triglyceride levels differed across treatment groups. The 3% t10, c12 groups exhibited higher (p<0.0001) cholesterol and LDL-C levels compared to control or other treatment groups. The 2% and 3% t10, c12 groups also presented elevated ALT level (p<0.05). The present data suggest that 3% t10, c12 possess potential adverse effects on liver and posing unfavorable change in lipid profile.

A novel polymer semiconductor with side chains thermally cleavable at a low temperature of 200 °C was synthesized. The complete cleavage and removal of the insulating 2-octyldodecanoyl side chains were verified with TGA, FT-IR, and NMR data. The N-H groups on the native polymer backbone are expected to form intermolecular hydrogen bonds with the C=O groups on the neighboring polymer chains to establish 3-D charge transport networks. The resulting side chain-free conjugated polymer is proven to be an active p-type semiconductor material for organic thin film transistors (OTFTs), exhibiting hole mobility of up to 0.078 cm2V-1s-1. This thermo-cleavable polymer was blended with PDQT to form films that showed a higher performance than the pure individual polymers in OTFTs. MoO3 or NPB was used as a hole injection buffer layer between the metal electrodes and the polymer semiconductor film layer in OTFT devices. This buffer layer improved hole injection, while its use in the OTFT, improved the field-effect mobility significantly due to better matched energy levels between the electrodes and the polymer semiconductor.