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Thesis (Ph.D.)--University of Rhode Island, 2007. / Includes bibliographical references (leaves 126-141).

Thesis (M.A.)--Ohio University, June, 2008. / Title from PDF t.p. Includes bibliographical references.

The goal of this research was to develop statistically robust ecosystem-based approaches, while optimizing data acquisition on relatively unexploited fish species in South Florida reefs, i.e., parrotfishes, Family Scaridae, in Biscayne Bay (with seasonal roller frame beam trawl surveys, 1996-2000) and Florida Keys (with annual Reef Fish Visual Censuses, 1997-2001), by following these steps: (I) analysis of information gaps for the stocks, including systematics, biogeography, population dynamics, reproductive ecology, trophodynamics, habitat use, and fisheries dynamics of Western Atlantic parrotfishes; (II) determination of primary research objectives from prioritization in Step I; (III) determination of essential fish habitats, ontogenetic shifts, migrations, and reef-seagrass habitat, from integration of stratified sampling design for fisheries-independent surveys, habitat selection theory-based analyses, and length-based analyses; (IV) estimation of population dynamics and fisheries-specific parameters encompassing life history demographics from empirical data or comparisons to theoretical expectations adapted to local conditions; (V) simulation modeling of a realistic range of fishing scenarios and demographic characteristics to evaluate the efficacy of potential traditional fisheries and spatial management strategies; and (VI) application of sampling optimization procedures and fisheries ecology approaches. Four scarid species had an estimated combined abundance of ca. 36.8 x 106 individuals in the Florida Keys. Connectivity among seagrass beds, coral reefs and deep waters had three major patterns: seagrass dwellers, reef dwellers, with inshore-to-offshore ontogenetic , and a seagrass-reef connection, using Biscayne Bay as an important recruitment ground. Marine protected areas of the Florida Keys National Marine Sanctuary did not show effects on abundance, size composition or spatial distribution of any parrotfish studied. Simulations suggested relatively short longevities (5-10 years), moderate body growth curvature, high instantaneous natural mortality rates (0.3-0.6 y super minus one), and low annual survival rates (27-54%). Simulated estimates of fishing mortalities ranged from 0.3 to 0.6 y super minus one, indicating low levels of exploitation, but low Spawning Potential Ratios (SPR = 23.5-26%). Proposed potential exploitation based on a legal minimum size equal to their size at first maturity and fishing rates equal or below to their natural mortality should secure SPR values at 45-48%.

Reef fisheries are important activities that support the livelihoods of millions of people. Reef fisheries exploit different habitats and typically target a diversity of species caught with a matching diversity of fishing gears. However, previous studies of reef fisheries have generally lacked detailed information on the catch and effort by gear and habitat type. In this dissertation, the sustainability of a coral reef fishery at the Marine Protected Area Costa dos Corais, Northeastern Brazil is assessed. In 1,833 landing interviews with local fishers, 100 fished species were identified and the total catch in kilograms for each species, the size composition of captured individuals and the habitat type exploited were recorded. First, the dissertation explores how fishing gears selected for distinct functional traits. A low competitive interaction between different gears was noted. Gears used in reef habitats selected for sedentary and benthic species, while gears used in coastal lagoons targeted highly mobile and pelagic. Second, the dissertation assesses how different gear affected the catch rates of coral reef fishes. Gears used on coral reef habitats had a more negative effect on catch rates than those used in coastal lagoons. The three gear types that affected catch rates more severely were hook and line, gillnet and cast net. Based on the results it is argued that the effects of reef fisheries on catch rates were highly depended on the vulnerability of target species. Finally, the dissertation assesses the ability of the fishing-down concept to assess the sustainability of the local fishery; the fishing-down is used to describe the process of moving away from catching large fish to progressively targeting smaller fish. I found strong support for the fishing-down, as fisheries decreased the average size of the fish assemblage and affected more heavily the catch rates of fishes with higher index of vulnerability. Overall results show that fisheries management should focus on the conservation of vulnerable taxa that are responsible for key ecological processes in coral reefs such as herbivory and coral predation. The decision-making process on management measures must be based on clear discussions with all stakeholders involved. / Doctor of Philosophy / Coral reefs are one of the richest environments on the planet, but overfishing threatens their conservation. Reef fishers use many techniques, or fishing gears, such as hook and line and nets, to catch a high diversity of fish species. Reef fisheries are often unsustainable as fishers are allowed to employ high levels of effort. Thus, studies are needed to assess the sustainability of coral reef fisheries and determine which gears are more negative to reef fishes. In a series of three studies, I investigated how reef fisheries affected fish communities in Northeastern Brazil. I used a total of 1,833 interviews with fishers in which I recorded the total catch for each species, obtained size of fish individuals, and asked about the environment that was exploited, coral reefs or coastal lagoons. First, I evaluated how the different gears selected for groups of species with unique life-history characteristics, such as size, mobility and period of activity. I found that gears such as hook and line and harpoon selected for species with sedentary traits that live near the bottom of the ocean, whereas nets selected for very mobile species that inhabit surface waters. In general, fishers did not compete for the same resources with different gears. Second, I assessed how the different gears affected the relative abundance of coral reef fishes. The three gear types that affected more heavily the relative abundance of fishes were hook and line, gillnet and cast net. I argue that the negative effects occurred because these gears caught species with characteristics that made them vulnerable to exploitation, such as slow body growth. Third the dissertation assesses the ability of the fishing-down concept to assess the sustainability of the local fishery; the fishing-down is used to describe the process of moving away from catching large fish to progressively targeting smaller fish. I found strong support for the fishing-down as the studied fisheries impacted the size and the abundance of local fishes. My results suggest that fisheries management should focus on the conservation of vulnerable fish responsible for key ecological processes such as herbivory and coral predation. The decision-making process regarding fisheries management must also be based on clear discussions with all stakeholders involved.

Madagascar, a country whose extraordinary levels of endemism and biodiversity are celebrated globally by scientists and laymen alike, yet historically has received surprisingly little research attention, is the setting of the present dissertation. Here, I contribute to the need for applied research by: 1) focusing on the most intensely fished section of the Toliara Barrier Reef, the Bay of Ranobe; 2) characterizing the marine environment, the human population, and the fisheries; and 3) collecting the longest known time-series of data on fisheries of Madagascar, thereby providing a useful baseline for future analyses. In Chapter 1, the bathymetry of the Bay was characterized following a unique application of the boosted regression tree classifier to the RGB bands of IKONOS imagery. Derivation of water depths, based on DOS-corrected images, following a generic, log-transformed multiple linear regression approach produced a predictive accuracy of 1.28 m, whereas model fitting performed using the boosted regression tree classifier, allowing for interaction effects (tree complexity= 2), provided increased accuracy (RMSE= 1.01 m). Estimates of human population abundance, distribution, and dynamics were obtained following a dwelling-unit enumeration approach, using IKONOS Panchromatic and Google Earth images. Results indicated, in 2016, 31,850 people lived within 1 km of the shore, and 28,046 people lived within the 12 coastal villages of the Bay. Localized population growth rates within the villages, where birth rates and migration are combined, ranged from 2.96% - 6.83%, greatly exceeding official estimates of 2.78%. Annual pirogue counts demonstrated a shift in fishing effort from south to the north. Gear and boat (pirogue) profiles were developed, and the theoretical maximum number of fishermen predicted (n= 4,820), in 2013, from a regression model based on pirogue lengths (R2= 0.49). Spatial fishing effort distribution was mapped following a satellite-based enumeration of fishers-at-sea, resulting in a bay-wide estimate of intensity equaling 33.3 pirogue-meters km-2. Landings and CPUE were characterized, with respect to finfish, by family, species, gear, and village. Expansion of landings to bay-wide fisheries yields indicated 1,885.8 mt year-1 of mixed fisheries productivity, with an estimated wholesale value of 1.64 million USD per annum.