abstract: LKB1/STK11 is a serine/threonine kinase first identified in C.elegans as a gene important for cell polarity and proliferation. Mutations in LKB1 are the primary cause of Peutz-Jegher’s cancer syndrome, an autosomal dominantly inherited disease, in which patients are predisposed to benign and malignant tumors. Past studies have focused on defining LKB1 functions in various tissue types, for example LKB1 regulates axonal polarization and dendritic arborization by activating downstream substrates in excitatory neurons of the developing neocortex. However, the implications of LKB1, specifically in the developing cortical inhibitory GABAergic interneurons is unknown. LKB1 deletion was achieved by using Cre-lox technology to induce LKB1 loss in cells localized in the medial ganglionic eminence (MGE) that express Nkx2.1 and generate cortical GABAergic neurons. In this research study it is suggested that LKB1 plays a role in GABAergic interneuron specification by specifically regulating the expression of parvalbumin during the development of fast-spiking interneurons. Preliminary evidence suggest LKB1 also modulates the number of Nkx2.1-derived oligodendrocytes in the cortex. By utilizing a GABAergic neuron specific LKB1 deletion mutant, we confirmed that the loss of parvalbumin expression was due to a GABAergic neuron autonomous function for LKB1. These data provide new insight into the cell specific functions of LKB1 in the developing brain. / Dissertation/Thesis / Masters Thesis Biology 2019

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The entorhinal cortex is reciprocally connected with both neocortical sensory areas and the hippocampal formation, and is thought to play a pivotal role in learning and memory. Changes in synaptic strength are thought to provide the major neurophysiological basis for memory formation, but little is known about synaptic plasticity in the entorhinal cortex. The objectives of this research were to provide a basis for the interpretation of evoked potentials recorded from the entorhinal cortex following pyriform (primary olfactory) cortex stimulation 𝘪𝘯 𝘷𝘪𝘷𝘰, and to determine the conditions under which synaptic enhancements in this pathway may occur and contribute to lasting changes in the processing of olfactory information. The synaptic currents which generate field potentials in the entorhinal cortex following pyriform cortex and medial septal stimulation were first localized to the superficial layers of the entorhinal cortex using current source density analysis techniques in the anesthetized rat. This allowed changes in the strength of these synaptic inputs to be monitored in the awake rat by measuring evoked field potential amplitudes at a single cortical depth. Long-term synaptic potentiation (LTP) in this pathway was reliably induced following stimulation of the pyriform cortex with either epileptogenic stimuli, or with prolonged subconvulsive high-frequency trains. Further, stimulation which results in short-term frequency potentiation effects, was found to increase the amount of LTP induced. Concurrent stimulation of the medial septum at a frequency similar to that of the endogenous theta rhythm also resulted in a cooperative enhancement of the LTP produced. Computational modelling techniques were then used to formalize the heterosynaptic contribution of frequency potentiating medial septal inputs to Hebbian synaptic modification in entorhinal cortex. These results indicate that the frequency of rhythmic activity in sensory afferents and the activity of the medial septum may play critical roles in the regulation of synaptic plasticity in the entorhinal cortex. / Thesis / Doctor of Philosophy (PhD)

Sporulation is a process of differentiation that allows capable cells to go into a dormant and resistant stage of life. To become active again, the spores must germinate into vegetative cells. One key process in spore germination is hydrolysis of the cortex peptidoglycan. This process has been studied in a variety of sporulating species; however, it has not been studied in <i>Bacillus anthracis</i>. A clear understanding of cortex degradation may provide information that will allow for better cleanup of spore contaminated sites. The structure of cortex peptidoglycan of <i>Bacillus anthracis</i> was characterized. The peptidoglycan of the dormant spores was extracted, digested with Mutanolysin, and analyzed using HPLC to determine the structure. The analyses revealed that the cortex peptidoglycan of <i>B. anthracis</i> was very similar to other <i>Bacillus sp.</i>. Spores were stimulated to germinate and cortex peptidoglycan was extracted and analyzed at various times. <i>Bacillus anthracis</i> appeared to hydrolyze its cortex more rapidly than other <i>Bacillus </i>species. While the spores of three species release the spore solute dipicolinic acid and resume metabolism at similar rates, the <i>B. anthracis </i> spores released 75% their cortex material within 10 minutes while the other species released only 20% in the same time frame. This suggests that the <i>B. anthracis</i> spore coats are more permeable to cortex fragments than those of the other species, or that <i>B. anthracis</i> rapidly cleaves the cortex into smaller fragments. Novel cortex fragments analyzed during <i>B. anthracis</i> germination were produced by a glucosaminidase; however, additional studies need to be performed for confirmation. / Master of Science

CwlD has sequence similarities to N-acetyl muramoyl-L-alanine amidases, a class of enzymes known to cleave the bond between the peptide side chain and the N-acetyl muramic acid residue in cortex peptidoglycan formation during sporulation. A major difference between vegetative peptidoglycan and spore peptidoglycan is the presence of muramic-<FONT FACE="Symbol">d</FONT> -lactam (MAL) in spore peptidoglycan. It was previously determined that a <I>cwlD</I> null mutant does not contain muramic-<FONT FACE="Symbol">d</FONT> -lactam in the spore cortex peptidoglycan and the mutant spores were unable to complete germination. Therefore, it is believed that CwlD plays a role in MAL formation during sporulation. However, the specific role of the protein had not been demonstrated. It was also previously found that <I>cwlD</I> is in a two-gene operon with <I>orf1</I>. Orf1 is produced within the forespore with CwlD. The hypothesized role of Orf1 is to inhibit CwlD activity from within the forespore. Muramoyl-L-alanine amidase activity was demonstrated by CwlD <I>in vivo</I>. Therefore, CwlD is carrying out the first step of MAL synthesis, cleaving the peptide side chain while other enzymes are needed to complete MAL formation. Two different forms of CwlD were over-expressed, with and without the protein's signal peptide sequence. Both forms of the protein were purified and in both cases activity was undetectable. Antibodies specific for CwlD were obtained which can be used in future research as a tool to further characterize CwlD activity. A series of <I>B. subtilis</I> <I>cwlD</I> operon mutants were constructed altering the expression patterns of Orf1 and CwlD within the mother cell and forespore compartments. Various resistance properties and the germination ability of the mutant dormant spores were analyzed. It was determined that the absence of just Orf1 or Orf1 and CwlD from within the forespore has no effect on the phenotypes tested. Peptidoglycan from developing mutant forespores was extracted and analyzed throughout sporulation. Evidence was obtained demonstrating that the role of Orf1 is not to inhibit CwlD from within the forespore as hypothesized. / Master of Science

The lateral prefrontal cortex (LPFC) and the anterior cingulate cortex (ACC) are two key regions of the frontal executive control network. Ascending cholinergic pathways differentially innervate these two functionally distinct cortices to modulate arousal and motivational signaling for higher-order functions. The action of acetylcholine (ACh) in sensory cortices is constrained by layer, anatomical cell type, and subcellular localization of distinct receptors, but little is known about the nature and organization of frontal-cholinergic circuitry in primates. In this dissertation, we characterized the anatomical localization of muscarinic acetylcholine receptors (mAChRs), m1 and m2–the predominant subtypes in the cortex–and their expression profiles on distinct cell types and pathways in ACC and LPFC of the rhesus monkey, using immunohistochemistry, anatomical tract-tracing, whole cell patch-clamp recordings, and single nucleus RNA sequencing. In the first series of studies (Chapter 2), we used immunohistochemistry and high-resolution confocal microscopy to reveal regional differences in m1 and m2 receptor localization on excitatory pyramidal and inhibitory neuron subpopulations and subcellular compartments in ACC (A24) versus LPFC (A46) of adult rhesus monkeys (Macaca mulatta; aged 7-11 yrs; 4 males and 2 females). The ACC exhibited a greater proportion of m2+ inhibitory neurons and a greater density of presynaptic m2+ receptors localized on inhibitory (VGAT+) terminations on pyramidal neurons compared to the LPFC. This result suggests a greater cholinergic suppression of GABAergic neurotransmission in ACC. In a second set of experiments (Chapter 3), we examined the heterogeneity of m1 and m2 laminar expression in functionally distinct ACC areas A24, A25, and A32. These differ in their connections with higher order cortical areas and limbic structures, such as the amygdala (AMY). The density of m1+ and/or m2 expressing (m1+/m2+) pyramidal neurons was significantly greater in A24 compared to A25 and to A32, while A25 exhibited a significantly greater density of m2+VGAT+ terminals. In addition, we examined the substrates for cholinergic modulation of long-range cortico-limbic processing using bidirectional neural tracers to label one specific subtype, the AMY-targeting projection neurons in these ACC areas. Compared to A24 and A32, the limbic ventral A25 had a greater density of m1+/m2+ AMY-targeting pyramidal neurons across upper layers 2-3 and deep layers 5-6, suggesting stronger cholinergic modulation of amygdalar outputs. Lastly (Chapter 4), we assessed the functional effects of cholinergic modulation on excitatory and inhibitory synaptic activity as well as the molecular signatures related to m1 and m2 receptor expression. In experiments using in vitro whole-cell patch-clamp recordings of layer 3 pyramidal neurons in ACC and LPFC, we found that application of the cholinergic agonist carbachol (CCh) significantly decreased the frequency of excitatory postsynaptic currents (EPSCs) to a greater extent in ACC A24 than in LPFC A46. Using single nucleus RNA sequencing, we found that enriched m1 and m2 transcriptional profiles in distinct cell-types and frontal areas (ACC A24 and LPFC A46) had differentially expressed genes associated with down-stream signaling cascades related to synaptic signaling and plasticity. Together, these data reveal the anatomical, functional, and transcriptomic neural substrates of diverse cholinergic modulation of local excitatory and inhibitory circuits and long-range cortico-limbic pathways in functionally-distinct ACC and LPFC frontal areas that are important for cognitive-emotional integration.

Une variété de modèles sur le processus de prise de décision dans divers contextes présume que les sujets accumulent les évidences sensorielles, échantillonnent et intègrent constamment les signaux pour et contre des hypothèses alternatives. L'intégration continue jusqu'à ce que les évidences en faveur de l'une des hypothèses dépassent un seuil de critère de décision (niveau de preuve exigé pour prendre une décision). De nouveaux modèles suggèrent que ce processus de décision est plutôt dynamique; les différents paramètres peuvent varier entre les essais et même pendant l’essai plutôt que d’être un processus statique avec des paramètres qui ne changent qu’entre les blocs d’essais. Ce projet de doctorat a pour but de démontrer que les décisions concernant les mouvements d’atteinte impliquent un mécanisme d’accumulation temporelle des informations sensorielles menant à un seuil de décision. Pour ce faire, nous avons élaboré un paradigme de prise de décision basée sur un stimulus ambigu afin de voir si les neurones du cortex moteur primaire (M1), prémoteur dorsal (PMd) et préfrontal (DLPFc) démontrent des corrélats neuronaux de ce processus d’accumulation temporelle. Nous avons tout d’abord testé différentes versions de la tâche avec l’aide de sujets humains afin de développer une tâche où l’on observe le comportement idéal des sujets pour nous permettre de vérifier l’hypothèse de travail. Les données comportementales chez l’humain et les singes des temps de réaction et du pourcentage d'erreurs montrent une augmentation systématique avec l'augmentation de l'ambigüité du stimulus. Ces résultats sont cohérents avec les prédictions des modèles de diffusion, tel que confirmé par une modélisation computationnelle des données. Nous avons, par la suite, enregistré des cellules dans M1, PMd et DLPFc de 2 singes pendant qu'ils s'exécutaient à la tâche. Les neurones de M1 ne semblent pas être influencés par l'ambiguïté des stimuli mais déchargent plutôt en corrélation avec le mouvement exécuté. Les neurones du PMd codent la direction du mouvement choisi par les singes, assez rapidement après la présentation du stimulus. De plus, l’activation de plusieurs cellules du PMd est plus lente lorsque l'ambiguïté du stimulus augmente et prend plus de temps à signaler la direction de mouvement. L’activité des neurones du PMd reflète le choix de l’animal, peu importe si c’est une bonne réponse ou une erreur. Ceci supporte un rôle du PMd dans la prise de décision concernant les mouvements d’atteinte. Finalement, nous avons débuté des enregistrements dans le cortex préfrontal et les résultats présentés sont préliminaires. Les neurones du DLPFc semblent beaucoup plus influencés par les combinaisons des facteurs de couleur et de position spatiale que les neurones du PMd. Notre conclusion est que le cortex PMd est impliqué dans l'évaluation des évidences pour ou contre la position spatiale de différentes cibles potentielles mais assez indépendamment de la couleur de celles-ci. Le cortex DLPFc serait plutôt responsable du traitement des informations pour la combinaison de la couleur et de la position des cibles spatiales et du stimulus ambigu nécessaire pour faire le lien entre le stimulus ambigu et la cible correspondante. / A variety of models of the decision-making process in many different contexts suggest that subjects sample, accumulate and integrate sensory evidence for and against different alternative choices, until one of those signals exceeds a decision criterion threshold. Early models assumed that this process is static and does not change during a trial or even between trials, but only between blocks of trials when task demands such as speed versus accuracy change. However, newer models suggest that the decision-making process is dynamic and factors that influence the evidence accumulation process might change both between trials in a block and even during a trial. This thesis project aims to demonstrate that decisions about reaching movements emerge from a mechanism of integration of sensory evidence to a decision criterion threshold. We developed a paradigm for decision-making about reach direction based on ambiguous sensory input to search for neural correlates of the decision-making process in primary motor cortex (M1), premotor cortex (PMd) and dorsolateral prefrontal cortex (DLPFc). We first tested several versions of the task with human subjects before developing a task (“Choose and Go”) that showed ideal behavior from the subjects to test our hypothesis. The task required subjects to choose between two color-coded targets in different spatial locations by deciding the predominant color of a central “decision cue” that contained different amounts of colored squares of the two target colors. The strength of the evidence was manipulated by varying the relative numbers of squares of the two colors. The response times and error rates both increased in parallel as the strength of the sensory evidence in the decision cue (its color bias) became increasingly weaker. Computational modelling showed that the choice behaviour of the subjects could be captured by different variants of the drift-diffusion model for accumulation of sensory evidence to a decision threshold. We then recorded cells from M1, PMd and DLPFc in 2 macaques while they performed the task. Behavioral data showed that response times and error rates increased with the amount of ambiguity of the decision cues. M1 cells discharged in correlation with movement onset and were not influenced by the ambiguity of the decision cues. In contrast, the discharge of PMd cells increased more slowly with increased ambiguity of the decision cues and took increasingly more time to signal the movement direction chosen by the monkeys. The changes in activity reflected the monkeys’ reach choices. These data support a role for PMd in the choice of reach direction. DLPFc data are preliminary but reveal a stronger effect of the color-location conjunction rule in the neuronal discharge than in PMd. Our conclusion is that PMd is involved in the evaluation of evidence for and against different alternatives and about target spatial location independent of the color of the targets. DLPFC neurons play a greater role in processing information about the color and location of the spatial targets and decision cue to resolve the color-location conjunction rule required to decide on the reach target direction.