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The work described in this thesis is broadly divided into two sections. The structural study on the lanthanide macrocyclic complexes was afforded by means of X-ray crystallography In this chapter, the molecules dota, the cationic enantiopure tetraamide europium and dysprosium complexes, the sodium complexes of the tetranaphthylamide and quinoyl derivative, the enantiopure gadolinium and europium complexes of the tetraamide series with esteratic sidechains, the lanathanum and ytterbium complexes of the dota derivative with benzyl phosphinate sidechains, and the tetracarboxyethyl series both as three uncomplexed stereoisomer and complexes of the RRRR stereoisomer with europium, gadolinium and terbium. These complexes exhibit quite a lot of structural diversity. Chapter five deals with experiments carried out at ultra low temperatures. A phase transition that the molecule benzil undergoes is investigated on the Fddd diffractometer, a study of the interesting 1,12-dicarbonyl borane was undertaken to obtain precise values for the carbonyl bond lengths and the unprecedented structure of its hydrate was revealed to be a carbene diol and not the expected carboxylic acid complex The standard for macromolecular tests for diffraction, chicken egg white lysozyme, was crystallised and used to optimise conditions for low-temperature data acquisition from macromolecular samples The work described in this Thesis was carried out in the Department of Chemistry, Durham University from October 1995 to January 1999, under the supervision of Professor J.A.K. Howard. All of the work is my own, unless stated to the contrary, and it has not been submitted previously for a degree at this or any other university.

Using confocal Raman spectroscopy/microscopy, we have monitored pharmaceutical crystallisation 'in situ' in three model (well characterised polymorphic systems) Active Pharmaceutical Ingredients (APIs) and one previously unstudied system where polymorphism had not being reported prior to this study: flufenamic acid, a Non Steroidal Non-Inflammatory Drug (NSAID); nifedipine, an antihypertensive; tolbutamide, used in the treatment of type II diabetes; and imipramine hydrochloride, an antidepressant respectively. Constrained crystallisation from the solid amorphous state was utilised to kinetically trap polymorphs via the Ostwald's rule of stages. Particular emphasis was placed on the phonon-mode/low wavenumber region (4-400cm-1) of the Raman spectral window (this region provides useful information about lattice environment). In all cases our results from the Raman experiments were complemented with similar experiments using Differential Scanning Calorimetry (DSC) and Variable Temperature X-ray Powder Diffraction (VTXRPD). To reduce data complexity, principal component analysis was deployed and found to be extremely effective. In chapter two, a multi-technique study of flufenamic acid (FFA) was carried out which served as a groundwork for later chapters. A solid-solid transformation between two forms of FFA (forms I and III) was observed, due to the abrupt nature of this transition, the 'Lindemann vibrational catastrophe' was envisaged as a possible mechanism for the transformation. Using FFA as a test case in chapter three, polymorphic transformations was monitored in both FFA forms I and III using in situ Raman spectroscopy (as well as VTXRPD) by adopting the constrained crystallisation approach. The approach showed excellent promise (with the XRPD patterns of FFA form II and one unknown form uncovered) and was further explored in later chapters using a variety of pharmaceutical materials. While in chapter four, the interconversion between the different polymorphs of nifedipine was studied using the constrained crystallisation approach monitored using in situ Raman spectroscopy (together with VTXRPD and DSC), our results compared favourably well with those previously published in literature. We also reported for the first time the phonon-mode Raman spectral for this system as earlier publications focussed only on the 'traditional' fingerprint region. Similarly in chapter five, in situ Raman spectroscopy was also used to monitor the polymorphic transformations in tolbutamide (using the constrained crystallisation approach), results from the Raman analysis was compared with those obtained from VTXRPD and found to be in agreement. Thus further showing that Raman spectroscopy combined with the constrained crystallisation approach is a veritable tool for monitoring polymorphic transitions. In chapter six, preliminary results (Raman/XRPD/DSC) showed for the first time that imipramine hydrochloride exhibits polymorphism, with the possibility of at least two new polymorphs. Combination of state of the art spectroscopic techniques with appropriate statistical methods, X-ray powder diffraction and DSC was shown to be an extremely effective approach to investigating and characterising polymorphism in drugs, often using only milligram or sub-milligram sample quantities. Lastly in chapter seven, the novel technique of Transmission Raman Spectroscopy (TRS) was employed in carrying out a quantitative study of polymorphic content in a model pharmaceutical formulation and the results obtained compared with those from traditional backscattering geometry. The transmission method is shown to provide a true bulk measurement of the composition, being unaffected by systematic or stochastic sub-sampling issues that can plague traditional backscattering geometries.

This thesis describes the effects of the application of high pressure to single crystals of small organic compounds. A range of different structural analysis techniques have been used with the emphasis on whole molecule interactions rather than atom-atom contacts. A study of the effect of pressure on the crystal structure of salicylaldoxime showed that the size of a pseudo-macrocyclic cavity within the structure is tuneable by compression. This cavity determines the reactivity of salicylaldoxime as a ligand, when deprotonated it is known to preferentially bind Cu 2+ ions over other cations in a bis(salicylaldoximato) complex due to the compatibility between the cavity size and the ionic radius of Cu 2+. Further compression studies on a range of substituted salicylaldoximes with different ambient cavity sizes showed that the application of pressure consistently decreases the cavity size across the whole series. Variation of substituent and the pressure yields cavities which span the covalent radii of many of the 1st transition series metal dications. This should allow the selectivity of metal extraction to be tuned using pressure. Computational studies of lattice energies and conformational energies in the compression studies of L-serine and 3-aza-bicyclo(3.3.1)nonane-2,4-dione have shown that significant molecular distortions can occur during compression of a crystal structure below 10 GPa. L-serine shows different conformations between phases with an energy difference of 40 kJ mol-1, whereas the conformation of 3-aza-bicyclo(3.3.1)nonane-2,4-dione is seen to distort within the same phase. Analysis of a database of compression studies using Hirshfeld surfaces has highlighted the fact that all different types of intermolecular interaction have a lower limit for compression, at least in the pressure regime below 10 GPa. These studies, along with theoretical calculations, have suggested a lower distance limit for H…H contacts of 1.7 A. This is potentially very useful for prediction of the effects of compression as H…H contacts are almost universal across small organic crystal structures.

Increasing the efficacy of ligands is crucial to many industrial processes and products. The design of new organic reagents which might find applications in automotive lubrication and extractive metallurgy are reported. Force-field based molecular modelling has been used in chapters 2 and 3 to investigate the structure of complexes of malonic acids and benzohydroxamic acids formed on binding to iron(III) oxide surfaces for which both have shown high affinity. Models were constructed in which the ligands were docked to planes in the lepidocrocite crystal structure to simulate their interaction with steel engine surfaces. The Cambridge Structural Database has been used to elucidate the structures of polynuclear complexes of carboxylic acids to define appropriate geometries for malonate complex models. The most plausible modes of surface binding involving malonic acid were modelled to establish which would show the most favourable ligand-surface and ligand-ligand secondary bonding. Modelling of hydroxamate surface binding was guided by structural motifs observed in a mononuclear trishydroxamato iron(III) complexes in a dinuclear complex [Fe2L2(μ2L)2Br2] where LH = benzohydroxamic acid. The resulting model predicted the surface activity of a range of hydroxamic acid derivatives which have been confirmed by measurements of adsorption isotherms carried out on high surface area goethite. The structures of square planar copper(II) complexes of 3-substituted salicylaldoxime ligands which are closely related to systems used in industrial hydrometallurgical processes have been investigated (chapter 4) to ascertain whether there are correlations between the solid state structures and the relative strengths of the ligands as copper extractants. It was expected that electronegative groups would enhance hydrogen bonding between ligands, pulling them towards one another with a consequent decrease in the binding cavity presented by the donor atoms. In practice the structures were found to be influenced by interactions present in the solid state. In particular, axial interactions were found to influence the inner coordination sphere geometry and these were also investigated (chapter 5) using high pressure X-ray crystal structures. Contrary to expectation, application of pressure was found to increase axial bond lengths in order to improve molecular packing efficiency so that the cell volume could decrease.

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