"May 2003" / Bibliography: leaves 72-87. / iii, 87 leaves : ill. ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / Thesis (Ph.D.)--University of Adelaide, Dept. of Applied and Molecular Ecology, 2003

"July 2004" / Explanatory notes on back page. / Bibliography: leaves 131 -181. / vii, 181 leaves : ill., plates (col.) ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / Thesis (Ph.D.)--University of Adelaide, Dept. of Medicine, 2004

Thesis (M.Sc.)--York University, 2004. Graduate Programme in Biology. / Typescript. Includes bibliographical references (leaves 100-121). Also available on the Internet. MODE OF ACCESS via web browser by entering the following URL:http://gateway.proquest.com/openurl?url%5Fver=Z39.88-2004&res%5Fdat=xri:pqdiss&rft%5Fval%5Ffmt=info:ofi/fmt:kev:mtx:dissertation&rft%5Fdat=xri:pqdiss:MQ99388

Undergraduate honors paper--Mount Holyoke College, 2006. Program in Biochemistry. / Includes bibliographical references (leaves 69-74).

Sexual differentiation is a fundamental characteristic of all eukaryotes, dictating sex-specific morphology, physiology and behavior. Diploid organisms with heteromorphic sex chromosomes (XX or XY) require regulatory compensation of the X chromosome to maintain correct levels of genetic expression between the sexes, a process termed sex-specific dosage compensation (SSDC). The fruit fly, <i>Drosophila melanogaster</i> dosage compensates by upregulating transcription of most X-linked genes two-fold. Associated with this two-fold up regulation is the male-specific lethal (MSL) complex, a RNA-protein complex comprised of at least five known proteins; MSL1, MSL2, MSL3, males absent on the first (MOF), and maleless (MLE) and two non-translated RNA molecules; roX1 (RNA on the X chromosome) and roX2. The complex modulates the chromatin structure of the male X chromosome via acetylation of H4K16. MOF and MSL3 both exhibit an N-terminal chromodomain, whose function is unclear. The MSL3 chromodomain has been suggested to bind H3K36Me3. Chromodomains are a paradigm of how a single structural fold has evolved in diverse proteins to bind distinct targets. Chromodomains are common to nuclear regulators, and bind diverse targets including histones, DNA, and RNA. They function as recognition motifs of histone post-translational modifications and facilitate the translation of the histone code into a distinct local chromatin structure via recruiting the appropriate chromatin modulating machinery.<p> The goal of this research is to determine the structure of the <i>D. melanogaster</i> MOF and MSL3 chromodomains by X-ray crystallographic and/or nuclear magnetic resonance techniques, to advance our understanding of the structural characteristics of these diverse domains. Here we report the cloning and reproducible expression and purification of the <i>D. melanogaster</i> MOF and MSL3 chromodomains and their Homo sapiens orthologues. The <i>D. melanogaster</i> MOF chromodomain, whose NMR structure was published during this research, has been crystallized. Attempts to solve the crystal structure by molecular replacement, multiple-wavelength anomalous dispersion, and single-wavelength isomorphous replacement are reported.

In Drosophila melanogaster, chemical cues in the form of cuticular hydrocarbons play an important role in reproductive behavior. The social and genetic processes that regulate their expression, however, are poorly understood. The social environment has been shown to influence hydrocarbon display. In this study, the effect of population density on the expression of hydrocarbons was evaluated. I demonstrate that the production of certain hydrocarbons depends on the population density in which the animal is reared. Individual hydrocarbons fluctuate in quantity independently from one another but the peaks during a light-dark cycle are static depending mostly on chain length. The regulation of fly hydrocarbons which are density-dependent is shown to be sexually dimorphic. The RNAi knockdown of various putative lipid metabolism genes was also used to study hydrocarbon expression. This study reveals that lipid metabolism genes which are not obvious mediators of HC synthesis influence cuticular hydrocarbon profiles.

Food and nutrition are important for energy balance, reproduction and maintenance of health in all species. Drosophila melanogaster feed on yeast and sugar and food availability affects reproduction. In this thesis, I show that mating frequency and fertility are affected by the composition of food in two D. melanogaster wild-type strains, Canton-S and Oregon-R. Canton-S flies mate multiple times in the presence of yeast and sugar, while Oregon-R only remate in the presence of yeast. However, Oregon-R flies have higher fertility counts on all food types compared to Canton-S. These effects of food do not appear to depend on smell or taste, because both chemosensory mutants and artificial sweeteners tested fail to block the effects of food on reproduction. Moreover, Canton-S, but not Oregon-R flies show an interaction between food and group size. I conclude that genetic differences, social context and nutrition interact to regulate reproduction in flies.

Food and nutrition are important for energy balance, reproduction and maintenance of health in all species. Drosophila melanogaster feed on yeast and sugar and food availability affects reproduction. In this thesis, I show that mating frequency and fertility are affected by the composition of food in two D. melanogaster wild-type strains, Canton-S and Oregon-R. Canton-S flies mate multiple times in the presence of yeast and sugar, while Oregon-R only remate in the presence of yeast. However, Oregon-R flies have higher fertility counts on all food types compared to Canton-S. These effects of food do not appear to depend on smell or taste, because both chemosensory mutants and artificial sweeteners tested fail to block the effects of food on reproduction. Moreover, Canton-S, but not Oregon-R flies show an interaction between food and group size. I conclude that genetic differences, social context and nutrition interact to regulate reproduction in flies.

In Drosophila melanogaster, chemical cues in the form of cuticular hydrocarbons play an important role in reproductive behavior. The social and genetic processes that regulate their expression, however, are poorly understood. The social environment has been shown to influence hydrocarbon display. In this study, the effect of population density on the expression of hydrocarbons was evaluated. I demonstrate that the production of certain hydrocarbons depends on the population density in which the animal is reared. Individual hydrocarbons fluctuate in quantity independently from one another but the peaks during a light-dark cycle are static depending mostly on chain length. The regulation of fly hydrocarbons which are density-dependent is shown to be sexually dimorphic. The RNAi knockdown of various putative lipid metabolism genes was also used to study hydrocarbon expression. This study reveals that lipid metabolism genes which are not obvious mediators of HC synthesis influence cuticular hydrocarbon profiles.

Sexual differentiation is a fundamental characteristic of all eukaryotes, dictating sex-specific morphology, physiology and behavior. Diploid organisms with heteromorphic sex chromosomes (XX or XY) require regulatory compensation of the X chromosome to maintain correct levels of genetic expression between the sexes, a process termed sex-specific dosage compensation (SSDC). The fruit fly, <i>Drosophila melanogaster</i> dosage compensates by upregulating transcription of most X-linked genes two-fold. Associated with this two-fold up regulation is the male-specific lethal (MSL) complex, a RNA-protein complex comprised of at least five known proteins; MSL1, MSL2, MSL3, males absent on the first (MOF), and maleless (MLE) and two non-translated RNA molecules; roX1 (RNA on the X chromosome) and roX2. The complex modulates the chromatin structure of the male X chromosome via acetylation of H4K16. MOF and MSL3 both exhibit an N-terminal chromodomain, whose function is unclear. The MSL3 chromodomain has been suggested to bind H3K36Me3. Chromodomains are a paradigm of how a single structural fold has evolved in diverse proteins to bind distinct targets. Chromodomains are common to nuclear regulators, and bind diverse targets including histones, DNA, and RNA. They function as recognition motifs of histone post-translational modifications and facilitate the translation of the histone code into a distinct local chromatin structure via recruiting the appropriate chromatin modulating machinery.<p> The goal of this research is to determine the structure of the <i>D. melanogaster</i> MOF and MSL3 chromodomains by X-ray crystallographic and/or nuclear magnetic resonance techniques, to advance our understanding of the structural characteristics of these diverse domains. Here we report the cloning and reproducible expression and purification of the <i>D. melanogaster</i> MOF and MSL3 chromodomains and their Homo sapiens orthologues. The <i>D. melanogaster</i> MOF chromodomain, whose NMR structure was published during this research, has been crystallized. Attempts to solve the crystal structure by molecular replacement, multiple-wavelength anomalous dispersion, and single-wavelength isomorphous replacement are reported.