Recent impactful advances in integrated photonics undoubtedly owe much to silicon and its associated enabling platform (SOI). Although silicon has proved to be an indispensable element in many photonic systems yet it seems that it is not the ultimate solution to address all the challenges facing the photonics community. Therefore, integration of silicon with other optical materials featuring diverse properties is highly desirable. Such integration will be conducive to platforms which are naturally more capable and are suited for implementation of a wider range of optical devices and diverse functionalities. This dissertation is dedicated to design and implementation of integrated optical elements for hybrid material platforms. The basic theoretical foundation of integrated photonics is laid out in Chapter 2. In Chapter 3, an interlayer grating coupler for a specific hybrid material platform is designed, and demonstrated. Considering the fact that in almost all integrated photonic platforms, fabrication imperfections lead to an unpredictable shift in the wavelength of operation of individual devices, post fabrication tuning/trimming is inevitable. A number of widely used post fabrication trimming/tuning methods are briefly reviewed in Chapter 4 with special emphasis on a method based on electron beam exposure. In Chapter 5, an ultra-fast, low-power, and self-trimmable electro-optic modulator in demonstrated on a Si-based multilayer platform. Due to its remarkable optical and electronic properties, graphene has become a valuable material for opto-electronic applications. Integration of this novel 2D material with SOI platform is investigated in Chapter 6. Graphene-based electro-optic modulation through absorption and refractive-index change is successfully demonstrated using electrostatic gating mechanism. Chapter 7 is devoted to demonstration of a field-programmable 2 by 2 optical switch on a vertically stacked Si/SiO2/SOI platform. In Chapter 8, the peak-dragging phenomenon in a nanobeam photonic crystal cavity is studied. The optical bistability associated with this nonlinear phenomenon is of great interest for all-optical processing and sensing application. Future directions of this thesis are also discussed in the last Chapter.

No description available.

Megasonic cleaning is routinely used in the semiconductor industry to remove particulate contaminants from wafer and mask surfaces. Cleaning is achieved through proper choice of chemical solutions, power density and frequency of acoustic field. Considerable work has been done to increase understanding of particle removal mechanisms in megasonic cleaning using different solution chemistries with varying ionic strengths. However, to date, the focus of all these studies of particle removal has been either cavitation or acoustic streaming.The propagation of sound waves through a colloidal dispersion containing ions is known to result in the generation of two types of oscillating electric potentials, namely, Ionic Vibration Potential (IVP) and Colloid Vibration Potential (CVP). These potentials and their associated electric fields can exert forces on charged particles adhered to a surface, resulting in their removal. In addition, the pressure amplitude of the sound wave is also altered in solutions of higher ionic strengths, which can affect the cavitation process and further aid in the removal of particles from surfaces. To test the two hypotheses, investigations have been conducted on the feasibility of removal of charged particles from silicon wafers in electrolyte solutions of different ionic strengths irradiated with a megasonic field of different power densities. Cleaning experiments have been performed using potassium chloride (KCl) as a model electrolyte and silica particles as model contaminant particles. The cleaning performance in KCl solution has been compared to that in other electrolytes solutions such as sodium chloride, cesium chloride and lithium chloride. In order to characterize the cavitation events in KCl solutions, acoustic pressure and sonoluminescence measurements have been performed using hydrophone and cavitation probe respectively. The results indicate that particle removal efficiency (PRE) increases with KCl concentration and transducer power density and much lower power densities are required at higher KCl concentration for a comparable level of cleaning. Further, cleaning performances in NaCl and CsCl were found to be superior to those in KCl and LiCl solutions. Theoretical computations show that the removal forces due to CVP are much larger in magnitude than those due to IVP and are comparable to van der Waals forces.

Te2As3Se5 (TAS) fibers are often used in bio-sensing applications requiring direct contact between the fiber and live cells. However, the toxicity and stability of chalcogenide glasses typically used in such bio-sensing applications are not well known. The stability and toxicity of TAS glass fibers were therefore examined. The surface of TAS fibers stored for up to three years in air were analyzed using X-ray photoelectron spectroscopy (XPS), inductively coupled plasma mass spectrometry (ICP-MS), and atomic force microscopy (AFM). It is shown that an oxide layer develops on the surface of TAS fibers stored in air. This oxide layer is highly soluble in water and therefore easily removed. Additional studies using cyclic voltammetry show that the fresh TAS glass surface is insoluble in water for at least a few days, and attenuation measurements show that oxidation does not affect the transmission properties of the glass fibers. It was also determined that old, oxidized fibers pose a toxic threat to cells, while washed and new fibers show no toxic effect. Therefore, it is concluded that a soluble oxide layer forms on the surface of TAS fibers stored in air and that this layer has a toxic effect on cells in an aqueous environment. However, through etching, the oxide layer and the toxicity can be easily removed.In other applications of telluride glasses, such as the search for possible signs of life on exoplanets, a glass transmitting further into the IR is required in order to detect molecules, such as CO2. A new family of Tellurium based glasses from the Ge-Te-I ternary system has therefore been investigated for use in space and bio-sensing applications. A systematic series of compositions has been synthesized in order to explore the ternary phase diagram in an attempt to optimize the glass composition for the fiber drawing and molding process. The resulting glass transition temperature range lies between 139°C and 174°C, with deltaT values between 64°C and 124°C. The most stable glass composition was found to be Ge20Te73I7. The Ge-Te-I glasses were found to have an effective transmission window between 2-20 microns, encompassing the region of interest for the identification of biologically relevant species such as carbon dioxide. Furthermore, the successful fibering and molding of the composition Ge20Te73I7 are shown. Lastly, an investigation into glass conductivity was completed resulting in a maximum conductivity value on the order of 10^-4 Ohm-1 cm-1 for the composition Ge20Te73I7.In an attempt to take advantage of the high conductivity of telluride glasses, a new approach to virus detection in an aqueous environment has been developed using the electrophoretic deposition of protein and viruses on the charged glass surface for in situ infrared characterization and identification. A proof of concept experiment has been completed using a germanium ATR plate and an indium tin oxide (ITO) plate as the experimental electrodes. Charged proteins and viruses were driven to the surface of the oppositely charged germanium ATR crystal, once a potential was applied to the system. FTIR/ATR spectroscopy was used before and throughout electro-deposition to enable the in situ observation of the deposition with time. This technique resulted in the successful deposition and removal of the protein Bovine Serum Albumin (BSA), and deposition of the virus MS2, a bacteriophage that infects only bacteria, with an applied voltage of only 1.1V. Furthermore, based on analysis of the ATR spectra, distinct spectral features were identified for the protein and virus showing the potential for identification and characterization of biological molecules in an aqueous environment. A Ge20Te73I7 ATR plate was synthesized but unsuccessfully applied as an electrode in these experiments, likely due to an inconsistent conductivity along the plate. A glass from the Ge-As-Te system with a lower but more consistent conductivity was thereafter synthesized and successfully used as an electrode and sensing element in the electro-deposition experiment.

No description available.

This thesis presents a study of three electrochemical methods applied to the fragmentation of proteins. Direct electrochemical oxidation at graphite electrodes, production of hydroxyl radicals on lead dioxide electrodes and electro-Fenton methods were each investigated as methods for fragmenting proteins. A key objective of this project was to achieve specific fragmentation, meaning that fragmentation would only occur at defined sites on each protein molecule and that this process may provide a new pathway to producing useful protein fragments. Protein fragments produced by electrochemical means were detected using mass spectroscopy and gel electrophoresis techniques. Direct electrochemical oxidation of the target proteins was studied at a graphite rod electrode in a solution containing acetonitrile, water and formic acid. β-lactoglobulin fragmentation was detected by mass spectroscopy, but fragmentation did not occur to an extent where fragments were observable by gel electrophoresis. It was evident that most of the electrolysis products appear to arise from non-cleavage oxidation reactions. The use of lead dioxide electrodes to generate hydroxyl radicals was thoroughly investigated in this work. For the first time, specific fragmentation of proteins has been achieved by direct electrochemical generation of hydroxyl radicals on the electrode surface. The pH and the chemical composition of the protein solutions were found have a strong influence on the extent of fragmentation. Electro-Fenton chemistry was conducted on a woven carbon fibre electrode. The electrode successfully reduced dissolved oxygen to produce hydrogen peroxide and regenerated Fe(II) from Fe(III). Cell conditions were optimized for applied current, method of oxygen delivery and cell division. The Fenton reaction between hydrogen peroxide and Fe(II) produced hydroxyl radicals that were able to specifically fragment proteins. It was not possible to increase the concentration of these protein fragments by increasing the hydrogen peroxide concentration, as the fragmentation products were also further fragmented. Electrochemical protein fragmentation was achieved in all three electrochemical systems, however the most promising results were achieved by electrochemical generation of hydroxyl radicals on a lead dioxide electrode. This work has the potential to become a fast and cost effective method for the fragmentation of proteins required for nutrition and medical purposes or for use in protein identification analysis with mass spectroscopy.

The work described in this thesis is divided into four sections: 1. The electrochemical reduction of fluorocarbon derivatives has been investigated. A number of systems have been studied analytically (using cyclic volt amine try) ; whilst preparatively a range of compounds have been synthesised, including semi-conducting polymers and four-membered perfluorocyclic products. 2. The use of sodium amalgam as an electromimetic medium to facilitate reduction of various fluorocarbon substrates has been studied. A series of volatile cyclic and acyclic F-dienes have been prepared from F-alkenes in good yield and conversion. The chemistry of these F-dienes is then described: 3. Both mono- and bi- functional nucleophiles have been reacted, giving a range of novel substitution products. 4. A number of free radical and cycloaddition reactions have been attempted without success. However, the complexation of decamethylferrocene as a metallocene one electron donor, with various F-alkenes of low reduction potential, has allowed a radical anion of a perfluorocyclic-diene to be stabilized and fully characterized for the first time.

No description available.

Thesis (Ph. D.)--University of Alberta, 2010. / Title from pdf file main screen (viewed on July 8, 2010). A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Doctor of Philosophy, Department of Physics, University of Alberta. Includes bibliographical references.

Thesis (M.S.)--Rochester Institute of Technology, 2005. / Typescript. Includes bibliographical references (leaves 40-41).