WNT ligands are secreted proteins that act as signals between cells. WNTs activate several interconnected signaling pathways that are required for embryonic development as well as tissue homeostasis in adults. The X-chromosomal Porcn gene encodes a membrane-bound O-acyl transferase that is required for the acylation of all 19 WNT ligands encoded in the mammalian genome. Non-acylated WNTs fail to be secreted from the producing cell and thus do not activate downstream signaling targets. In my thesis research, I have investigated the function of Porcn in mouse embryonic development. In vitro, I have shown that Porcn is required for canonical WNT signaling in ES cells and further, for their differentiation into endodermal and mesodermal derivatives. Taking advantage of a mouse line carrying a conditional (floxed) Porcn allele that I have generated, I have focused my studies on the early embryonic roles of Porcn using Cre recombinase-mediated and X chromosome inactivation-based ablation of Porcn function in vivo. I have found that the earliest requirement for Porcn in mouse development is the induction of gastrulation. In contrast to findings from in vitro studies, I have provided evidence that Porcn is not required for pre-implantation development in vivo. Dissecting embryonic and extra- embryonic roles of Porcn, I have been able to show that Porcn is required in the extra-embryonic chorion in order to mediate chorio-allantoic fusion, whereas ablation in the extra-embryonic visceral endoderm had no apparent effects. The extra-embryonic requirement for Porcn results in a parent-of-origin effect in Porcn heterozygous females due to X chromosome inactivation. In contrast to the placentation defect causing embryonic lethality of maternal allele mutants, deletion of the paternal allele caused variable fetal defects resulting in perinatal lethality with only rare survivors to adulthood. Both fetuses and adults represent a mouse model for Focal Dermal Hypoplasia (FDH), the syndrome caused by mutations in the human PORCN gene. My studies highlight the importance of PORCN-mediated WNT signaling for gastrulation, placentation, and fetal development, but suggest that endogenous WNT secretion does not play an essential role in either implantation or blastocyst lineage specification.

During vertebrate oocyte maturation, the chromosomes progress to and arrest at metaphase of meiosis II in preparation for fertilization. This process includes emission of the first polar body. The second polar body is emitted after fertilization. A number of proteins are accumulated during oocyte maturation. Inhibition of this de novo translation does not appear to affect the progression of meiosis during oocyte maturation. The role of these pools of proteins has yet to be elucidated. Curiously, several of the upregulated proteins are key players in mitosis, including INCENP, a subunit of the chromosome passenger complex implicated in chromosome segregation and cytokinesis. During early stages of development in Xenopus laevis, the embryo cycles through mitosis, also known as embryo cleavage, every 30min with little to no time for transcription/translation. Our goal is to determine if the de novo translation of these mitotic proteins during oocyte maturation has a role in early embryogenesis. We used morpholino oligonucleotides antisense to INCENP mRNA (INCENPmorpho) to inhibit de novo translation during oocyte maturation. Using confocal imaging and the host transfer technique, these injected oocytes were matured, fertilized and assessed for developmental competency. INCENPmorpho and a control morpholino (ctrlmorpho) had no discernable effect on 1st or 2nd polar body emission. Whereas ctrlmorpho embryos developed normally, INCENPmorpho embryos did not cleave. Thus, de novo translation of INCENP during oocyte maturation is necessary for embryogenesis. Specifically, accumulation of INCENP and other mitotic proteins during oocyte maturation may be a common strategy in this species to prepare for the rapid and synchronous mitoses during early embryogenesis.

A common event during in vitro morphogenesis (either embryogenesis or shoot organogenesis) is the ability of somatic cells within the explants to de-differentiate and acquire “meristematic identity”. The developmental program of such meristematic cells can then be re-routed to form shoots or embryos depending on the imposed culture environment. The objective of this research is to investigate how the altered expression of Brassica genes regulating meristematic activity in vivo affects in vitro morphogenesis. It is predicted that ectopic expression of positive regulators of the shoot apical meristem, SHOOT MERISTEMLESS (STM) and ZWILLE (ZLL) which increase the pool of meristematic cells within the apical meristem, has a beneficial effect on somatic embryogenesis and shoot organogenesis. Conversely the over-expression of CLAVATA1 (CLV1), a negative regulator which depletes the pool of meristematic cells, should inhibit both processes. Over-expression of the Brassica STM in Arabidopsis enhanced the production of somatic embryos and shoots in vitro possibly by reducing the requirement of the tissue for exogenous auxin, which is the inductive signal for the production of embryogenic and organogenic cells. This was also accompanied by profound alterations in gene expression patterns affecting components of DNA methylation and glutathione metabolism, which are beneficial for embryo formation. The introduction of STM also enhanced Arabidopsis shoot organogenesis through profound transcriptional changes in cytokinin signalling. While the ectopic expression of the Brassica CLV1 inhibited both somatic embryogenesis and shoot organogenesis, the expression of ZLL had no effects on the production of somatic embryos but encouraged the formation of shoots. Taken together these results suggest the existence of similar genetic mechanisms regulating the formation of meristem cells in vivo and embryogenic/organogenic cells in vitro.

Hindsight (HNT) is a zinc finger transcription factor that is required for morphogenesis of the Drosophila embryo, having roles in germ band retraction (GBR) as well as dorsal closure (DC). HNT expression is also found in sensory organ precursors (SOP) of the developing pupal peripheral nervous system, and muscle progenitor cells, but the role of HNT in neurogenesis and myogenesis during embryogenesis has not been investigated in any depth. Microarray analysis of embryos over-expressing HNT during GBR and DC identified 1290 genes with significant changes in expression. This data set included many potential HNT targets, including genes associated with myogensis, and a disruption of muscle development was observed in embryos over-expressing HNT. It is possible that HNT may function to repress muscle identity genes in muscle founder cells. In addition, HNT over expressing embryos were found to resemble the neurogenic class of mutants. Among the potential target genes, D-Pax2 (shaven, sparkling, CG11049) expression, which is known to be expressed in the developing peripheral nervous system, was confirmed to be up-regulated following HNT over-expression. Interestingly, D-Pax2 and HNT expression were found to co-localize at the onset of their expression at stages 10-12 in embryos, but were not co-localized in later stages of embryogenesis. The up-regulation of D-Pax2 by HNT over-expression was further characterized and was found to be associated with strong ectopic HNT expression. The relevance of HNT to the regulation of D-Pax2 during normal development remains to be determined, but it is possible that endogenous expression of HNT is involved in D-Pax2 repression.

Aquesta tesi doctoral s'engloba dins d'un projecte general d'estudi de gens implicats en l'embriogènesi del blat de moro. L'embriogènesi del blat de moro, i en general la de totes les plantes superiors, es dóna en tres etapes: una primera etapa on es diferencien tots els diversos teixits que formaran l'embrió, una segona etapa on l'embrió acumula productes de reserva i un tercer període, la dormància, que finalitza quan les condicions ambientals són les idònies per a la germinació. En el laboratori estàvem interessats, concretament, en l'estudi de gens implicats en la primera etapa morfogenètica, on els diferents teixits i estructures embrionàries queden definides. Per tal d'estudiar gens que s'expressaven en aquest període, una de les estratègies que es va realitzar fou un crivellat diferencial entre teixit embrionari i teixit de planta adulta. D'entre els diferents clons obtinguts, un corresponia a un clon parcial que presentava similitud amb receptors quinasa i que fou objecte d'estudi. A partir d'aquest clon es va obtenir el clon complet i es va anomenar MARK (per Maize Atypical Receptor Kinase). MARK presenta una estructura típica d'un receptor quinasa amb un domini extracel.lular, que conté 6 còpies imperfectes de LRR (Leucine- Rich Repeats), un únic domini transmembrana i un domini quinasa intracel.lular. El domini quinasa de MARK presenta, però, algunes variacions en els residus aminoacídics que es consideren claus per a la funció catalítica dels dominis quinasa. En concret cinc dels aminoàcids considerats essencials per a la fosforilació es troben substituits en el domini quinasa de MARK (DK-MARK). Els experiments de fosforilació in vitro que es van realitzar al laboratori, van mostrar com MARK era incapaç de fosforilar in vitro. Aquesta característica no és, però, exclusiva de MARK. Una búsqueda en les bases de dades ens van permetre identificar altres seqüències que també presentaven els mateixos o altres canvis en aquestes posicions aminoacídiques. En les bases de dades de plantes es van identificar un conjunt de seqüències genòmiques o ESTs amb aquestes característiques i només una d'elles, la proteïna TMKL1 d'Arabidopsis, ha sigut descrita com un receptor quinasa incapaç de fosforilar in vitro. Respecte a la búsqueda de receptors similars a MARK en les bases de dades d'animals, es van identificar també un conjunt de proteïnes que, en alguns casos, s'ha descrit que no tenen activitat quinasa in vivo. Per exemple, un dels casos més ben estudiats és el del receptor erbB3 que forma part de la família de receptors del EGF (Epidermal Growth Factor). Aquesta família de receptors està formada per 4 receptors: erbB1, erbB2, erbB3 i erbB4, dels quals només l'erbB3 no presenta activitat catalítica. S'ha descrit que erbB3 és capaç, tot i no fosforilar in vivo, de participar activament en la transducció del senyal formant heterodímers amb els altres membres de la família. Així, erbB3 és fosforilat pel seu partner i pot iniciar la cascada de transducció del senyal. La participació d'erbB3 en la transducció del senyal és essencial ja que embrions de ratolí knock-out pel gen erbB3 són inviables. Així doncs, el fet que receptors quinasa catalíticament inactius participin en les cascades de transducció del senyal, suggereix l'existència de nous mecanismes d'acció per a la transducció del senyal. Per tant, l'objectiu d'aquest treball fou l'estudi del mecanisme d'acció de MARK mitjançant la caracterització les proteïnes capaces d'interaccionar amb el seu domini quinasa. Per tal d'assolir aquest objectiu, es va realitzar un crivellat de doble-híbrid amb una llibreria de cDNA d'embrions de blat de moro de 7 DAP. D'aquest crivellat es va obtenir un conjunt de possibles clons positius que foren seqüenciats i entre els quals es van escollir per un estudi més detallat aquells que s'havien obtingut més vegades com a clons independents. Aquests clons codificaven per: una SAMDC (S-Adenosil Descarboxilasa), una eIF5 (Eukaryotic translation initiation), una hypothetical protein, una unknown protein, una gamma-adaptina i una MAP4K. Amb aquests 6 clons es van fer estudis in vitro i in vivo per tal de confirmar al seva interacció amb DK-MARK. Els estudis in vivo es van realitzar amb la soca de llevat AH109, una soca més astringent que la utilitzada en el crivellat, ja que presenta tres gens marcadors: Histidina, Adenina i Lacz. Els resultats obtinguts van mostrar que els clons codificants per SAMDC i eIF5 no van créixer en un medi selectiu per His i Ade i, per tant o es tracta de falsos positius del sistema o la seva interacció amb DK-MARK és dèbil. D'altra banda, la resta dels clons analitzats (proteïna hipotètica, una proteïna de funció desconeguda, la gamma-adaptina i una MAP4K) van créixer en medis en absència de Histidina i Adenina. Els assatjos de b-galactosidasa van ser tots positius a excepció de la proteïna hipotètica suggerint que potser aquesta interacció sigui més feble. D'altra banda també es van realitzar estudis in vitro amb la tècnica del pull-down. Els resultats obtinguts amb aquesta tècnica van recolzar els obtinguts en cèl.lules de llevat, ja que tots els clons analitzats a excepció dels codificants per SAMDC i eIF5 van donar un resultat d'interacció amb KD-MARK in vitro positiu. Davant aquests resultats ens vam centrar en l'estudi de la proteïna similar a MAP4K, doncs algunes proteïnes de la seva família s'han relacionat amb receptors de membrana. Els clons que es va obtenir del crivellat codificaven per una proteïna similar amb el domini C-terminal a les proteïnes BnMAP4Ka1 i a2 de Brassica napus. Aquestes proteïnes presenten una forta similitud de seqüència amb proteïnes de la família GCK/SPS1 que formen part d'un grup particular de MAPK relacionades amb la proteïna Ste20 (sterile 20 protein) de llevat. Ste20p activa la MAP3K de llevat Ste11 directament per fosforilació, transduint d'aquesta manera el senyal del receptor de feromones de creuament de les cèl.lules de llevat i es pot, doncs, considerar com una proteïna del tipus MAP4K (mitogen-activated protein kinase kinase kinase kinase). En els darrers anys, s'han identificat un gran nombre de proteïnes similars a Ste20: fins a una trentena en mamífers, en Drosophila, en Caenorhabditis elegans i en altres organismes. Segons la seva estructura aminoacídica, la família Ste20 s'ha classificat en dues subfamílies: les proteïnes STE20/PAK (p21-activated kinases) i la subfamília GCK/SPS1 (germinal center kinases). Les dues subfamílies estan formades per proteïnes que contenen un domini quinasa i un domini regulador, però, mentre que les proteïnes PAK presenten el domini quinasa en la part C-terminal, les GCKs el presenten en la regió N terminal. Les proteïnes GCK presenten una elevada diversitat estructural en el domini regulador permetent la seva classificació en 6 subfamílies. Mitjançant la tècnica del RACE es va obtenir el clon de cDNA complet que es va anomenar MIK (MARK Interacting Kinase). Amb la tècnica del Southern blot es va poder determinar que el gen MIK és un gen de còpia única en el genoma de blat de moro. Per tal d'analitzar la possible interacció entre DK-MARK i MIK, es va estudiar tant el patró d'expressió d'ambdós gens com el seu patró d'acumulació d'ambdues proteïnes durant l'embriogènesi del blat de moro. El patró d'expressió, analitzat per Northen blot va mostrar uns patrons coincidents al llarg de l'embriogènesi des del seu inici fins als 20 DAP amb una acumulació màxima de mRNA en embrions de 15 DAP. D'altra banda per tal d'estudiar el patró d'acumulació de la proteïna MIK així com per comparar-lo amb el de MARK, es van realitzar estudis de Westerns blot. Els resultats també van mostrar una coincidència en el temps de l'acumulació de les proteïnes MARK i MIK durant l'embriogènesi de blat de moro amb una major acumulació en embrions de 15 i 20 DAP. Es van dur a terme també estudis d'immunolocalitzacions sobre embrions de blat de moro de 15 DAP per tal d'estudiar en quins teixits s'acumulaven ambdues proteïnes. Les immunolocalitzacions van mostrar una major acumulació tant de MARK com de MIK en les zones meristemàtiques i en el teixit vascular sobretot del coleòptil on s'aprecia una forta co-localització de MARK i MIK. Totes aquestes dades són compatibles, doncs, amb una possible interacció de les proteïnes MARK i MIK, tot i que no la demostren. Per tal de demostrar la interacció es van realitzar experiments d'immunoprecipitació in vivo a partir d'extractes d'embrions. Malauradament, els resultats no són clars i en aquests moments en el laboratori s'estan posant a punt aquests experiments. També es van realitzar estudis comparatius de seqüència amb diferents proteïnes de la família GCK, mostrant una major similitud amb les proteïnes de la subfamília GCK-III. La subfamília GCK-III ha estat molt poc estudiada i en formen part un conjunt de proteïnes amb funcions molt diverses des de l'apoptosi, la citoquinesi o l'anòxia cel.lular. Per tant, la similitud de seqüència possiblement fa referència a una conservació en el mecanisme d'acció més que no pas a una conservació funcional. La possible interacció de MARK amb el domini C-terminal de MIK (el domini regulador) podria activar aquesta última iniciant una cascada de transducció del senyal en un model en el que una proteïna del tipus GCK-III faria de lligam directa entre un receptor de membrana i una cascada de senyalització intracel.lular. Aquest tipus de lligam entre un recepctor de membrana i mòduls intracel.lulars de senyalització s'ha descrit per a altres proteïnes GCK, si bé no directament sinó a través de proteïnes adaptadores. D'altra banda, la interacció directa de MARK, un receptor quinasa atípic que no té activitat catalítica, amb MIK suggereix un mecanisme on receptors atípics podrien interaccionar en la transducció del senyal activant la via de les MAPK.

Blue-flowered Conospermum are endemic to Western Australia, and show great potential as cut flowers. Propagation from cuttings or seed proved difficult, and root initiation in vitro is problematic. This thesis examines the floral biology of the species and the possibility of using somatic embryogenesis to overcome propagation problems. A survey of explant tissue types for C. eatoniae and C. caeruleum was carried out to identify tissue that could be induced into embryogenic pathways. Vegetative, semi-floral and floral buds were initiated into culture from February to June, but were found unsuitable for embryogenesis, producing shoots, callus or dying in culture. Leaves from in vitro leaf cultures formed callus in the presence of 2,4-D and BAP, but were unable to differentiate into embryos in the presence of a variety of growth regulator combinations and concentrations. Immature zygotes died in culture. Direct embryogenesis and/or embryogenic callus was observed on mature zygotes of the species C. caeruleum, C. spectabile, C. dorrienii and C. brownii, and somatic embryos were maintained in culture for up to 18 months for C. caeruleum. Maturation and germination of somatic embryos proved difficult; treatments of cold, ABA, desiccation or mannitol did not induce maturation. It appears that developmental pathways in Conospermum are well defined and are difficult to alter in vitro. It was concluded that somatic embryogenesis has limited commercial potential in these species. Conospermum species have an active pollination mechanism where the style is held in a state of tension when the flower opens. When pressure is applied at the base of the style by an insect, the style flicks downwards, striking the insect pollinator and releasing pollen from the anther in a single dusty mass. However, the breeding systems of blue-flowered Conospermum have not previously been well explored. Flowers on a C. eatoniae inflorescence opened from the basal end upwards acropetally, with the terminal two or three buds never opening. Fruit and seed set occurred only from the basal one to three buds. Isolation of C. eatoniae and C. amoenum flowers showed they were unable to self-pollinate in the absence of insect pollinators. Experiments to determine the timing of the peak of stigmatic receptiveness were inconclusive. Pollen germinated and penetrated the stigma 0 ¡V 6 days after anther dehiscence. Pollen loads on the stigma did not relate to the number of pollen tubes observed down the style. Controlled pollinations of cultivated C. eatoniae at a field station using self and cross pollen, revealed compatibility with a range of pollen genotypes, as pollen tubes were observed extending down the style. However, late-acting incompatibility could not be ruled out as controlled crosses failed to set any seed as flowers were shed from the bush. DNA analysis of open pollinated C. eatoniae seed progeny from two plants from a field station and two plants in natural bushland revealed very different pollination habits. Plants from the field station showed no outcrossing, with progeny closely resembling the maternal parent, whereas plants from the wild population showed outcrossing with several different paternal parents. These results suggest self-pollinated seed can be reliably obtained in a plantation situation using stands of ramets of the same clone. Alternatively, assuming that the required insect pollinators are present in a cultivated stand, it should be possible to obtain cross pollinated seed by surrounding the maternal plant with the desired paternal parent. Unusual pollen behaviour was observed for many blue-flowered species, a white-flowered species of Conospermum, and close relative, Synaphea petiolaris. Up to three pollen tubes emerged from the triporate pollen in vitro, and at rates of up to 55 ƒÝms-1. This rate was maintained for only 2 s but is greater than 20 times faster than reported in the literature for any species, in vitro or in vivo. Pollen with multiple tubes was also observed on the stigma in vivo in C. amoenum flowers. Changing the osmotic pressure of the germination medium by altering sucrose concentration influenced the number of tubes to emerge from the pollen grain; generally the number of tubes decreased as sucrose increased. However, the rate of tube growth was unaffected. The addition of calcium channel blockers to the germination medium had no effect on Conospermum growth rate, nor did they eliminate pulses of tube growth. Observation of Conospermum pollen ultrastructure revealed similarities to Gramineae pollen. The tube cytoplasm was packed with vesicles filled with material of similar electron density to the cell wall. Few golgi were identified, and the apical end of the tube contained these vesicles, smaller secretory vesicles and mitochondria. This is atypical of the tip, which is normally free of large vesicles. Distinct zones in the cytoplasm were not identified, which is similar to Gramineae. Like the grasses, Conospermum appears to pre-manufacture cell wall material and store it in vesicles ready for rapid germination and extension. A biological function of multiple pollen tube emergence with such rapid growth was not elucidated. This research has shown Conospermum to be a complex and very interesting genus. Further investigation into the remarkable growth of multiple pollen tubes would enhance our knowledge of the biological processes involved in tube growth and the process of fast wall formation. The potential benefits to the cut flower industry of commercialising some of these species warrants further effort to find an efficient method of propagation. Introduction into horticulture may be the only means by which these threatened species will survive.

Thesis (Ph.D.)--University of Melbourne, School of Forest and Ecosystem Science, 2006. / Typescript. Includes bibliographical references (leaves 184-216).

Thesis (Ph.D.) - University of Queensland, 2003. / Includes bibliography.

Post translational modifications (PTMs) of histone tails are an important determinant of chromatin structure, and can act as key regulators of DNA-dependent processes. Methylation of histone 3 at lysine 4 (H3K4) is one of the most widely studied PTMs because of its correlation with transcription. Three methylation states exist at H3K4: mono-, di, and tri-methylation (H3K4me1, -me2, and -me3, respectively). Each methylation state occupies a distinct genomic position, supporting the view that the extent of methylation at H3K4 has a functional significance. However, the exact biological function of these three marks are not well understood. H3K4 methylation is written by SET domain-containing enzymes that function within SET/COMPASS/MLL complexes. Our lab has previously identified the SET-16 enzyme as writing H3K4me3 in C. elegans. The other well-characterised H3K4-specific methyl transferases in the worm is SET-2, an enzymes responsible for bulk H3K4me2/me3 levels. Using targeted RNAi screens, we have characterised the full landscape of SET domain enzymes affecting all three methylation states at H3K4 during embryogenesis in C. elegans (Chapter 3). Unexpectedly, many previously uncharacterised enzymes were identified as preferentially affecting each of the methylation states, including SET-19 that can deposit all three marks, and several candidates that preferentially affect H3K4me1: SET-30, SET-27, MES-2, and MES-4. During the project, Greer et al. 2014 independently identified two enzymes with activities targeting H3K4, SET-17 and SET-30, which were also candidates from our RNAi screens. With a focus on enzymes acting on H3K4me1, we demonstrate that H3K4me1 candidates can show different patterns of temporal regulation and also have roles in regulating soma versus germline cell-fate decisions (Chapter 4). Finally, we demonstrate a novel role for MES-2 (a methyltransferase enzyme with a highly conserved role in depositing repressive H3K27 methylation) in acting alongside the SPR-5 H3K4me2 demethylase to regulate levels of H3K4me1 during embryogenesis (Chapter 5).

During vertebrate oocyte maturation, the chromosomes progress to and arrest at metaphase of meiosis II in preparation for fertilization. This process includes emission of the first polar body. The second polar body is emitted after fertilization. A number of proteins are accumulated during oocyte maturation. Inhibition of this de novo translation does not appear to affect the progression of meiosis during oocyte maturation. The role of these pools of proteins has yet to be elucidated. Curiously, several of the upregulated proteins are key players in mitosis, including INCENP, a subunit of the chromosome passenger complex implicated in chromosome segregation and cytokinesis. During early stages of development in Xenopus laevis, the embryo cycles through mitosis, also known as embryo cleavage, every 30min with little to no time for transcription/translation. Our goal is to determine if the de novo translation of these mitotic proteins during oocyte maturation has a role in early embryogenesis. We used morpholino oligonucleotides antisense to INCENP mRNA (INCENPmorpho) to inhibit de novo translation during oocyte maturation. Using confocal imaging and the host transfer technique, these injected oocytes were matured, fertilized and assessed for developmental competency. INCENPmorpho and a control morpholino (ctrlmorpho) had no discernable effect on 1st or 2nd polar body emission. Whereas ctrlmorpho embryos developed normally, INCENPmorpho embryos did not cleave. Thus, de novo translation of INCENP during oocyte maturation is necessary for embryogenesis. Specifically, accumulation of INCENP and other mitotic proteins during oocyte maturation may be a common strategy in this species to prepare for the rapid and synchronous mitoses during early embryogenesis.