The cell cycle is a highly complex process that is under the control of several pathways.  Failure to regulate and/or complete the cell cycle often leads to cell cycle arrest, which may be followed by programmed cell death (apoptosis). One cell type that has a variety of unique cell cycle properties is the horizontal cell of the chicken retina. In this thesis we aimed to characterize the final cell cycle of retinal horizontal cells. In addition, the regulation of the cell cycle and the resistance to apoptosis of retinal horizontal cells are investigated. Our results show that the final cell cycle of Lim1-expressing horizontal progenitor cells is heterogenic and three different cell cycle behaviors can be distinguished. The horizontal cells are generated by: (i) an interkinetic nuclear migration with an apical mitosis; (ii) a final cell cycle with an S-phase that is not followed by mitosis, such cells remain with a fully or partially replicated genome; or (iii) non-apical (basal) mitoses. Furthermore, we show that the DNA damage response pathway is not triggered during the heterogenic final cell cycle of horizontal progenitor cells. However, chemically induced DNA damage activated the DNA damage response pathway without leading to cell cycle arrest, and the horizontal progenitor cells entered mitosis in the presence of DNA damage. This was not followed by apoptosis, despite the horizontal cells being able to functionally activate p53, p21CIP1/waf1, and caspase-3. Finally, we show that FoxN4 is expressed in horizontal progenitor cells and is required for their generation. Over-expression of FoxN4 causes cell death in several neuronal retinal cell types, except horizontal cells, where it results in an overproduction. In conclusion, in this thesis, a novel cell cycle behavior, which includes endoreplication not caused by DNA damage and a basal mitosis that can proceed in the presence of DNA damage, is described. The cell cycle and cell survival processes are of particular interest since retinal horizontal cells are suggested to be the cell-of-origin for retinoblastoma.

Indiana University-Purdue University Indianapolis (IUPUI) / During gestation, the maternal liver undergoes various adaptive changes to cope with the in-creasing physiological and metabolic demands from both maternal and fetal compartments. Among these changes are robust growth and changes in transcriptome profile. However, how these events happen, and other aspects of this physiological phenomenon remains unexplored. Therefore, we aimed at further understanding how maternal liver responds to pregnancy. We used BrdU labeling combined with a virus-based tracing approach to quantify the percentage of maternal hepatocytes undergoing DNA synthesis and division over the course of gestation in mice. We found that ~50% maternal hepatocytes entered S-phase but, unexpectedly, did not undergo cytokinesis. This strongly suggests that maternal hepatocytes in fact undergo endoreplication instead of hyperplasia, as believed previously. Pericentral Axin2+ hepatocytes were reported to behave as liver stem cells responsible for liver homeostasis and turnover. We generated an in vivo fate-tracing mouse model to monitor the behavior of these cells in the maternal liver. Our results showed that they did not proliferate during pregnancy, homeostasis, and following par-tial hepatectomy. Curiously, we uncovered that, hepatocytes exhibit developmental phenotypes at mRNA level pre-pregnancy and at both mRNA and protein level during pregnancy. In the non-pregnant state, hepatocytes reserved mRNA expression of liver progenitor marker genes Cd133 and Afp, which are localized in the nuclei, without protein translation. During gestation, maternal hepatocytes displayed cytoplasmic translocation of Cd133 and Afp transcripts, con-comitant with corresponding protein expression. Overall, all maternal hepatocytes became CD133+, and a subset of them express AFP. Addi-tionally, in non-pregnant livers, mRNA of Epcam, another liver progenitor marker, was ex-pressed within majority of hepatocytes, whereas its protein was solely translated in the pericen-tral region. In contrast, by end-gestation, EPCAM protein expression switched to the periportal region. These observations indicate that maternal hepatocytes exhibit heterogeneous develop-mental phenotypes, partially resembling fetal hepatocytes. It is intriguing why mature hepato-cytes dedifferentiate into a progenitor state in response to pregnancy. AFP is considered to be produced primarily from fetal liver and thus is used to evaluate fetal development health. A potential clinical relevance of our data is that we identified maternal liver as a new source of AFP. The hippo signaling pathway has been shown to potently control liver growth and hepato-cyte heterogenicity. Surprisingly, we found that pregnancy neither altered the expression nor activities of the components of this pathway and its effector YAP1/TAZ. This finding indicates that pregnancy-induced maternal liver growth is not driven by hippo-YAP1 pathway. However, we demonstrate that the presence of YAP1 is essential for CD133 protein expression in mater-nal hepatocytes. Collectively, we revealed that, as pregnancy advances, maternal hepatocytes likely undergo endoreplication and display developmental phenotypes. Mechanistically, YAP1 dictates the expression of CD133, contributing to the pregnancy-dependent phenotypic changes of maternal hepatocytes.

Dans ce travail, j'ai utilisé les trichomes (poils foliaires) d'Arabidopsis comme modèle pour étudier la différenciation cellulaire et l'endoréplication. Mon travail a révélé que les cycles d’endoréplication chez Arabidopsis étaient contrôlés par les protéines inhibitrices CYCLIN DEPENDENT KINASE (CDK), elles-mêmes contrôlées par dégradation via l'action de complexes SKP-CULLIN-F-BOX (SCF). Ceci crée vraisemblablement des niveaux variables d'activité de CDK, qui sont nécessaires pour la progression répétée au travers des phases de synthèse d'ADN dans les cellules entrées en endoréplication. Cependant, la sur-expression des inhibiteurs des CDK ne bloque pas seulement l'endoréplication mais résulte aussi dans la dédifférenciation des cellules précurseurs des trichomes. Des résultats similaires ont été obtenus en utilisant des allèles faibles de perte de fonction pour CDKA;1, la principale CDK chez Arabidopsis, laissant émerger la notion que l'endoréplication est nécessaire à la maintenance du devenir des cellules. De manière surprenante, la dédifférenciation peut être au moins partiellement réprimée quand RBR1, l'homologue chez Arabidopsis de la protéine animale suppresseur de tumeur RETINOBLASTOMA (Rb), est mutée de manière concomitante. De même, une mutation de la methyltransferase CURLY LEAF, composante du complexe PRC2, rétablit le défaut de maintenance des trichomes chez les mutants faibles pour CDKA;1. Pris dans leur ensemble, ces résultats suggèrent que le complexe PRC2 et la protéine RBR1 établissent, au niveau tissulaire, un seuil pour la différenciation cellulaire au cours du développement de l'épiderme chez Arabidopsis. / Cell differentiation is often linked with a switch from a mitotic to an endoreplication cycle, in which cells re-replicate their DNA without cell division. The molecular regulation of endoreplication and its biological fonction are only poorly understood. Here, I have used trichomes (leaf hairs) of Arabidopsis as a model to study cell differentiation and endoreplication. My work revealed that endoreplication cycles in Arabidopsis are controlled by cyclin dependent kinase (CDK) inhibitor proteins, which in turn are subject to protein degradation mediated by the action of SKP-CULLIN-F-BOX (SCF) complexes. This presumably creates oscillating levels of CDK activity, which are needed for repeated progression through DNA synthesis phases in endoreplicating cells. However, overexpression of CDK inhibitors did not only block endoreplication but also resulted in the dedifferentiation of trichome precursor cells. Similar observations were made with weak- loss-of-function alleles for the major CDK in Arabidopsis, CDKA;1, giving rise to the notion that endoreplication is required for cell fate maintenance. Trichome dedifferentiation was enhanced when trichome fate regulators were mutated. Surprisingly, the dedifferentiation could be at least partially repressed when RBR1, the Arabidopsis homolog of the animal tumor suppressor protein Retinoblastoma (Rb), was concomitantly mutated. Similarly, a mutation in PRCZ-methyltransfcrase CURLY LEAF (CLF) rescued the trichome maintenance defect of weak CDKA;1 mutants. Taken together, this suggests that PRC2 and RBR1 set a dynamic tissue threshold for cell differentiation during epidermis development in Arabidopsis.

O estudo do díptero Rhynchosciara americana forneceu informações importantes sobre a biologia cromossômica, por apresentar cromossomos politênicos e amplificação gênica em diferentes órgãos. Dentre os órgãos que apresentam especializações do ciclo celular, o ovário é um dos mais interessantes, possuindo características únicas, como o desenvolvimento sincrônico dos folículos ovarianos e o fato de apresentar uma única e gigante célula nutridora conectada ao ovócito através de um canal citoplasmático. Une em si: meiose no ovócito, célula nutridora com poliploidia seguido de politenia e células foliculares com mitose. Células poliplóides e politênicas possuem cópias extras de DNA genômico através de repetidos ciclos de fase S sem que ocorra a divisão celular, um processo denominado endoreplicação. Os ciclos celulares, são dirigidos pela oscilação da ativação de complexos ciclina/Cdk. Estudos mostraram que a ciclina A atua em células endoreplicativas em Drosophila e a ciclina B inibe ciclos endoreplicativos induzindo a divisão celular. Torna-se relevante investigar a associação dessas moléculas reguladoras do ciclo celular com os ciclos endoreplicativos que ocorrem na ovogênese de R. americana. Perfis de expressão das ciclinas A e B foram detectados nos ovários por RT-PCR ao longo do desenvolvimento. Ensaios de incorporação do nucleosídeo timidina mostraram elevada atividade proliferativa das células foliculares para formar o folículo e o fim da atividade endoreplicativa nas células nutridoras em pupas de 4 dias. Preparações de imunolocalização proteica em ovários na fase de pupa revelaram acúmulo de ciclina A no citoplasma das células nutridoras e dos ovócitos, e acúmulo de ciclina B no citoplasma e na vesícula germinal do ovócito, atuando nos mecanismos meióticos. O estudo de proteínas relacionadas ao ciclo celular nesse modelo é importante para um melhor entendimento dos ciclos celulares incomuns presentes em diferentes órgãos de insetos. / Study of the diptera Rhynchosciara americana has provided important information about chromosome biology, for it displays polytene chromosomes and gene amplification in different organs. Among the organs that possess cell cycle specializations, the ovary is one of the most interesting ones, showing unique characteristics, such as the synchronous development of follicles and the presence of a single giant nurse cell connected to the oocyte through a cytoplasmic channel. This organ gathers: meiosis in the oocyte, nurse cell with polyploidy followed by polyteny, and follicle cells in mitosis. Polyploid and polytene cells have extra copies of genomic DNA obtained via sequential cycles of S phase not followed by cell division, a process called endoreplication. Cell cycles are driven by the oscilation in the activation of different cyclin/CDK complexes. Studies have shown that Cyclin A acts in endoreplicating cells in Drosophila and Cyclin B inhibits endoreplicative cycles, inducing cell division. Thus, it is relevant to investigate the association between these cell cycle-regulating proteins and the endoreplication cycles that occur during the oogenesis of R. americana. Expression profiles of cyclins A and B were evaluated in the ovary via RT-PCR throughout the development. Thymidine nucleoside incorporation assays showed high proliferative activity in follicle cells to build the follicle and the end of endoreplicative activity in nurse cells of 4-day-old pupae. Protein immunolocalization in ovary at the stage of pupa has shown accumulation of Cyclin A in the cytoplasm of nurse cells and oocytes, and accumulation of Cyclin B in the cytoplasm and germinal vesicle of the oocyte, acting on meiosis mechanisms. The study of proteins related to cell cycle in this model is important for a better understanding of uncommon cell cycle in different insect organ.

Lignin is the second most abundant biopolymer on earth and is found in the wood (xylem) of vascular land plants. To transport the hydro-mineral sap, xylem forms specialized conduit cells, called tracheary elements (TEs), which are hollow dead cylinders reinforced with lateral secondary cell walls (SCW). These SCWs incorporate lignin to gain mechanical strength, water impermeability and resistance against pathogens. The aim of this thesis is to understand the spatio-temporal deposition of lignin during TE differentiation and the relationship with its neighbouring cells. In vitro TE differentiating cell cultures of Zinnia elegans and Arabidopsis thaliana are ideal tools to study this process: cells differentiate simultaneously into 30-50% TEs while the rest remain parenchymatic (non-TEs). Live-cell imaging of such TEs indicated that lignification occurs after programmed cell death (PCD), in a non-cell autonomous manner, in which the non-TEs provide the lignin monomers. This thesis confirms that lignification occurs and continues long after TE PCD in both in vitro TE cultures and whole plants using biochemical, pharmacological and cytological methods. The cooperative supply of lignin monomers by the non-TEs was demonstrated by using Zinnia and Arabidopsis in vitro TE cultures. Inhibitor experiments revealed further that the non-TEs supply reactive oxygen species (ROS) to TEs and that ROS are required for TE post-mortem lignification. Characterization of the non-TEs showed an enlarged nucleus with increased DNA content, thus indicating that non-TEs are in fact endoreplicated xylem parenchyma cells (XP). The cooperative lignification was confirmed in whole plants by using knock-out mutants in a lignin monomer synthesis gene, which exhibit reduced TE lignification. The XP specific complementation of these mutants led to nearly completely rescuing the TE lignin reduction. Using microscopic techniques, the spatial distribution of lignin was analyzed in TEs from in vitro cultures and whole plants, revealing that lignification is restricted to TE SCWs in both protoxylem and metaxylem. These specific deposition domains were established by phenoloxidases, i.e. laccases localized to SCWs and peroxidases, present in SCWs and the apoplastic space. Laccases were cell-autonomously produced by developing TEs, indicating that the deposition domains are defined before PCD. Altogether, these results highlight that the hydro-mineral sap transport through TEs is enabled by the spatially and temporally controlled lignification of the SCW. Lignification occurs post-mortem by the supply of monomers and ROS from neighbouring XP cells and is restricted to specific deposition domains, defined by the pre-mortem sequestration of phenoloxidases.

<p>During gestation, the maternal liver undergoes various adaptive changes to cope with the increasing physiological and metabolic demands from both maternal and fetal compartments. Among these changes are robust growth and changes in transcriptome profile. However, how these events happen, and other aspects of this physiological phenomenon remains unexplored. Therefore, we aimed at further understanding how maternal liver responds to pregnancy. We used BrdU labeling combined with a virus-based tracing approach to quantify the percentage of maternal hepatocytes undergoing DNA synthesis and division over the course of gestation in mice. </p> <p>We found that ~50% maternal hepatocytes entered S-phase but, unexpectedly, did not undergo cytokinesis. This strongly suggests that maternal hepatocytes in fact undergo endoreplication instead of hyperplasia, as believed previously. Pericentral Axin2⁺ hepatocytes were reported to behave as liver stem cells responsible for liver homeostasis and turnover. We generated an <i>in vivo</i> fate-tracing mouse model to monitor the behavior of these cells in the maternal liver. Our results showed that they did not proliferate during pregnancy, homeostasis, and following partial hepatectomy. Curiously, we uncovered that, hepatocytes exhibit developmental phenotypes at mRNA level pre-pregnancy and at both mRNA and protein level during pregnancy. In the non-pregnant state, hepatocytes reserved mRNA expression of liver progenitor marker genes <i>Cd133</i> and <i>Afp</i>, which are localized in the nuclei, without protein translation. During gestation, maternal hepatocytes displayed cytoplasmic translocation of <i>Cd133</i> and <i>Afp</i> transcripts, concomitant with corresponding protein expression. </p> <p>Overall, all maternal hepatocytes became CD133⁺, and a subset of them express AFP. Additionally, in non-pregnant livers, mRNA of <i>Epcam</i>, another liver progenitor marker, was expressed within majority of hepatocytes, whereas its protein was solely translated in the pericentral region. In contrast, by end-gestation, EPCAM protein expression switched to the periportal region. These observations indicate that maternal hepatocytes exhibit heterogeneous developmental phenotypes, partially resembling fetal hepatocytes. It is intriguing why mature hepatocytes dedifferentiate into a progenitor state in response to pregnancy. AFP is considered to be produced primarily from fetal liver and thus is used to evaluate fetal development health. </p> A potential clinical relevance of our data is that we identified maternal liver as a new source of AFP. The hippo signaling pathway has been shown to potently control liver growth and hepatocyte heterogenicity. Surprisingly, we found that pregnancy neither altered the expression nor activities of the components of this pathway and its effector YAP1/TAZ. This finding indicates that pregnancy-induced maternal liver growth is not driven by hippo-YAP1 pathway. However, we demonstrate that the presence of YAP1 is essential for CD133 protein expression in maternal hepatocytes. Collectively, we revealed that, as pregnancy advances, maternal hepatocytes likely undergo endoreplication and display developmental phenotypes. Mechanistically, YAP1 dictates the expression of CD133, contributing to the pregnancy-dependent phenotypic changes of maternal hepatocytes.

Chez Arabidopsis thaliana, les protéines SIAMESE-RELATED (SIM/SMR1 à 13) forment une famille plante-spécifique d’Inhibiteurs de Kinase Cycline-dépendante (CKI), homologue des Kip-Related Proteins. SIM et SMR1 sont des régulateurs positifs de la transition du cycle mitotique vers l’endoréplication. L’expression des gènes SIM/SMR est induite en réponse àdes stress. L’un des stress abiotiques majeurs pour les plantes est la sécheresse. Les SIM/SMR pourraient être dégradées par la voie de la protéolyse spécifique de l’Ubiquitin Proteasome System (UPS). Les SIM/SMR sont de bons candidats pour relier l'activité du cycle cellulaire aux stimuli de l'environnement. Ce travail a démontré l’implication de la protéolyse UPS dans le contrôle posttraductionnel de tous membres SIM/SMR testés. Il démontre que SIM, SMR2 et SMR1 sont nécessaires à l’endoréplication des cellules foliaires. Lors d’un stress hydrique, l’expression des gènes SIM, SMR1, SMR3 et SMR5 est induite. Le profil spatio-temporel de ces inductions a mis en évidence deux groupes de gènes avec des fonctions distinctes. Les mutants sim, smr5 et sim.smr1.smr2 sont hypersensibles au stress hydrique. / In Arabidopsis thaliana, the SIAMESE-RELATED proteins (SIM/SMR1 to 13) are a plantspecific family of Cyclin-dependent Kinase Inhibitors (CKIs), homologous to the Kip-Related Proteins. SIM and SMR1 are positive regulators of the switch from mitotic cycle to endoreplication. The expression of SIM/SMRs genes is induced in response to stress. One of the major abiotic stress for plants is the drought stress. The SIM/SMRs could be degraded through the specific proteolysis of Ubiquitin Proteasome System (UPS). The SIM/SMRs proteins are good candidates to link cell cycle activity with environmental stimuli.This research work has shown the involvement of the UPS proteolysis in the posttranslational control of all the tested members of the SIM/SMR family. It also shows that SIM, SMR2 and mostly SMR1 are required in endoreplication of leaf cells. During drought stress, the expression of SIM, SMR1, SMR3 and SMR5 genes is induced. The spaciotemporal pattern of those inductions revealed two groups of genes with distinct functions. In addition, the sim, smr5 and sim.smr1.smr2 loss-of-function mutants tested are hypersensitive to drought stress.

Les légumineuses peuvent interagir avec les bactéries du sol de la famille des Rhizobiaceae. Cette interaction aboutit à la formation d'un organe spécialisé appelé nodosité. Au sein des cellules symbiotiques des nodosités, les rhizobia sont capables de fixer l'azote atmosphérique et de la convertir en ammoniac, qui est une source d'azote assimilable par les plantes. Chez la Légumineuse Medicago truncatula, les cellules symbiotiques produisent une large famille de peptides riches en cystéines appelées (NCRs) spécifiquement exprimés dans les nodosités. Ces NCRs induisent la différenciation des bactéroïdes qui se traduit par un allongement cellulaire couplé à une forte endoréplication du génome (les bactéroïdes deviennent polyploïdes) contribuant ainsi à une augmentation importante de la taille des cellules, ainsi qu’une perméabilité membranaire accrue et une perte de toute capacité reproductrice. Les peptides NCRs ressemblent à des défensines, des peptides antimicrobiens, acteurs clés de l’immunité innée. L'analyse de l'expression de 334 gènes NCR dans 267 différentes conditions expérimentales en utilisant la base de données MtGEA (Medicago truncatula Gene Expression Atlas) a révélé que l'ensemble des gènes NCR testés (sauf quatre) n'est exprimé que dans les nodosités, ils ne sont pas exprimés dans d’autres organes de la plante, ni lors d’une infection par des agents pathogènes. De plus l’expression des NCRs n’est induite en réponse à aucune interaction biotique ou abiotique testée ou à des facteurs Nod. Les gènes NCR sont activés en vagues successives au cours de l’organogenèse nodulaire et ce profil temporel est en corrélation avec une localisation spatiale spécifique de leurs transcrit de la zone apicale à la partie proximale de nodosités. En outre, nous avons montré que les NCRs ne sont pas induites pendant la sénescence des nodules. Ces analyses expérimentales ensemble avec des calculs d’entropie de Shannon, une métric pour la spécificité d’expression, montrent que les gènes NCR sont parmi les gènes les plus fortement et le plus spécifiquement exprimés chez M. truncatula. Ainsi, l'expression des NCRs est soumise à une régulation extrêmement stricte et ils sont activés exclusivement pendant l’organogenèse et au cours du développement nodulaire dans les cellules symbiotiques polyploïdes. Cette analyse a suggéré l'implication de la régulation épigénétique des gènes NCR. La formation des cellules symbiotiques s'exerce par une endoreplication et est associée à une reprogrammation transcriptionnelle. En utilisant le tri par cytométrie en flux des noyaux, en fonction de leur contenu en ADN, nous avons montré que les vagues transcriptionnelles sont en correlation avec les niveaux croissants de ploïdie et resultent des modifications épigénétiques durant les cycles d’endoréplication. Nous avons étudié la méthylation de l'ADN génomique et l'accessibilité à la chromatine, ainsi que la présence des marqueurs répresseurs (H3K27me3) ou activateurs transcriptionnels (H3K9ac) sur des gènes spécifiques des nodosités. La méthylation différentielle de l'ADN n'a été trouvée que dans un petit sous-ensemble de gènes symbiotiques spécifiques aux nodosités. Néanmoins, plus que la moitié des gènes NCR était différentiellement méthyles. D'autre part, l'expression des gènes était corrélée avec la décondensation de la chromatine (ouverture), un enrichissement du marqueur H3K9ac et une diminution du marqueur H3K27me3. Nos résultats suggèrent que l’endoréplication, pendant la différenciation cellulaire dans les nodosités, fasse partie des mécanismes qui lèvent l’inactivation transcriptionnelle des gènes spécifiques des nodosités, ceci résultant de modifications des codes épigénétiques au niveau de la chromatine. / Legume plants are able to interact with soil bacteria from the Rhizobiaceae family. This interaction leads to the development of a specialized organ called root nodule. Inside the symbiotic nodule cells, rhizobia are capable to fix atmospheric nitrogen and convert it to ammonia, which is a usable nitrogen source for the plant. In the legume Medicago truncatula the symbiotic cells produce high amounts of Nodule-Specific Cysteine-Rich (NCR) peptides which induce differentiation of the rhizobia into enlarged, polyploid and non-cultivable bacterial cells. NCRs are similar to innate immunity antimicrobial peptides. The NCR gene family is extremely large in Medicago with about 600 genes. The expression analysis of 334 NCR genes in 267 different experimental conditions using the Medicago truncatula Gene Expression Atlas (MtGEA) revealed that all the NCR genes except five are exclusively expressed in nodules. No NCR expression is induced in any other plant organ or in response to biotic, abiotic stress tested or to Nod factors. The NCR genes are activated in consecutive waves during nodule organogenesis, which correlated with a specific spatial localization of their transcripts from the apical to the proximal nodule zones. Moreover, we showed that NCRs are not induced during nodule senescence. According to their Shannon entropy, a metric for tissue specificity, NCR genes are among the most specifically and highest expressed genes in M. truncatula. Thus, NCR gene expression is subject to an extreme tight regulation since they are only activated during nodule organogenesis in the polyploid symbiotic cells. This analysis suggested the involvement of epigenetic regulation of the NCR genes. The formation of the symbiotic cells is driven by endoreduplication and is associated with transcriptional reprogramming. Using sorted nodule nuclei according to their DNA content, we demonstrated that the transcriptional waves correlate with growing ploidy levels and investigated how the epigenome changes during endoreduplication cycles. We studied genome-wide DNA methylation and chromatin accessibility as well as the presence of repressive H3K27me3 and activating H3K9ac histone tail modifications on selected genes. Differential DNA methylation was found only in a small subset of symbiotic nodule-specific genes, including over half of the NCR genes, while in most genes DNA methylation was unaffected by the ploidy levels and was independent of the genes’ active or repressed state. On the other hand, expression of these genes correlated with ploidy-dependent opening of the chromatin and in a subset of tested genes with reduced H3K27me3 levels combined with enhanced H3K9ac levels. Our results suggest that endoreduplication-dependent epigenetic changes contribute to transcriptional reprogramming in differentiation of symbiotic cells.

<p>  </p> <p>Mutations drive evolution, generating variation that selection can act upon. Germline mutations are heritable genetic alterations that occur in the gametes prior to fertilization and until embryogenesis. The study of germline mutations is vital to understanding the genetic basis of heritable diseases and evolution. Somatic mutations are genetic alterations across the body that arise post-fertilization in non-gametic cells. Although somatic mutations in most animals cannot be inherited, they can still significantly affect an organism's reproductive success. In humans, for example, cancers can be the result of somatic mutations. Somatic mutations originate from both exogenous mutagens (e.g. UV radiation) and endogenous processes (e.g. DNA replication, aging). Beyond their origins, we know little about the distribution and frequency of somatic mutations across Animalia. Honey bees provide a unique model for the study of somatic mutations as they are haplodiploid: males come from unfertilized eggs and are haploid, while females come from fertilized eggs and are diploid. It is therefore possible to sequence and robustly identify somatic mutations in haploid males. I have developed a unique exploratory study to elucidate the distribution of somatic mutation accumulation in honey bee drones. With this, I aim to investigate processes generating somatic mutations. Our findings demonstrate that variance in somatic mutational load is better captured across individuals rather than within individuals (across tissues). I provide a comprehensive tissue atlas of somatic mutagenesis in haploids. Our findings drive us to enhance our view of mutagenesis from the tissue level down to the cellular level. </p>