Temporarily open/closed estuaries (TOCE’s) are the numerically dominant type of estuary accounting for ≈ 70 % of all estuaries along the South African coastline. Despite their numerical dominance, aspects of the biology of organisms within these systems, particularly macrocrustacea remain poorly understood. This study firstly assessed the abundance and biomass of the most common isopod, Exosphaeroma hylocoetes, in three Eastern Cape TOCE’s, (the West Kleinemonde, East Kleinemonde and Kasouga Estuaries), and their response to mouth breaching events. This study was followed by aspects of the biology of the isopod including their utilisation of submerged macrophytes as a refuge from predation and/or possible food source, as well as the growth rates of the isopods in the laboratory under different environmental conditions. Mean isopod abundances and biomasses ranged between 0 and 4 791 ind. m⁻² and 0 and 9.65 mg dwt. m⁻² in the West Kleinemonde Estuary and between 0 and 108 ind. m⁻² and 0 and 0.318 mg dwt. m⁻² in the nearby East Kleinemonde Estuary. In the Kasouga Estuary, the values ranged between 0 and 3 650 ind. m⁻² and 0 and 5.105 mg dwt. m⁻². Temporal and spatial changes in the abundance and biomass of E. hylocoetes within the three systems was primarily linked to mouth phase, with populations declining when the mouth was open and to a lesser extent, seasonality. In all three estuaries maximum isopod abundances and biomasses were recorded in their middle and upper reaches, which could be ascribed to the presence of submerged macrophytes particularly Ruppia maritima, in two of the estuaries. Males (5.71 ± 0.41 mm) were significantly larger than females (3.99 ± 0.26 mm), but the sex ratios were skewed in favour of females, (a common feature in many isopod populations). Females were found carrying brood throughout the study, releasing offspring directly into the water column, to allow recruitment to the populations. The larger the female, the larger the brood carried (up to a maximum of 72 embryo/mancas). Results of laboratory experiments indicate that the close association of Exosphaeroma hylocoetes with submerged macrophytes is a result of the plant stands providing a refuge against predation by selected ichthyofauna. However stable carbon isotope and fatty acid analyses indicate that E. hylocoetes made use of ephiphytic algae and detritus on the stems of R. maritima, rather than the submerged macrophyte itself. There were no significant differences in the growth rates of male and female isopods at combinations of temperature (15 and 25 °C) and salinity (15 and 35 ‰). Laboratory growth studies revealed that males lived longer than females (25.77 ± 3.40 weeks vs 21.52 ± 3.00 weeks), and therefore achieved larger overall size. Females, however, reached sexual maturity (at 2.5 mm) at a faster rate (two to four weeks) than males (5.5 mm after 6.5 to 11 weeks), dependent on temperature. Exosphaeroma hylocoetes with its association with submerged macrophytes, early maturity, its growth rates and longevity, female-biased sex ratios and year-round breeding, all contribute to its success in temporary open/closed estuaries.

Long-term interannual changes in richness, abundance, diversity and structure of the fish community in the temporarily open/closed East Kleinemonde Estuary, Eastern Cape, are described and the recruitment success of two estuary-dependent marine species assessed. In addition, laboratory experiments were conducted to assess the possible role of olfaction in the recruitment process of an estuary-dependent marine fish species. Multivariate analyses of the annual marine fish communites identified two distinct groups with more species recorded during years that succeeded spring (September to November) mouth opening events than in years following no mouth opening events in spring. Interannual community stability (IMD) and seriation (IMS) also increased from the ‘other’ to the ‘spring’ years. These results highlight the importance of the timing of mouth opening to the marine fish community in a temporarily open/closed estuary. This study also made use of long-term records of daily mouth state and linked them to the recruitment of distinct year-class cohorts in two spardis with contrasting lifehistory characteristics. Lithognathus lithognathus only recruited into the estuary in years when the mouth opened between late August and January. This was linked to the limited spawning season of this species and its inability to enter closed estuaries via wave overwash events. In contrast, recruitment by Rhabdosargus holubi juveniles appeared to be uninterrupted and was not determined by the seasonality of mouth opening. This species dominates the marine-spawning component of the East Kleinemonde Estuary and its success is attributed to an extended spawning season and its ability to recruit into estuaries during both overwash and open mouth conditions. Attraction of postflexion Rhabdosargus holubi larvae to estuary, surf zone and river water was also measured using a rectangular choice chamber. In two sets of experiments, conducted during peak recruitment periods, larvae from both the surf zone and estuary mouth region selected estuary water with a significantly higher frequency than sea water. Larvae collected in the mouth region showed a stronger preference for river water than those collected in the surf zone, thus suggesting that these fish are more attracted to freshwater influenced nursery areas once they have entered the estuary than those in the surf zone. Larvae collected in the marine environment also selected surf zone water with significantly higher frequencies than estuary water or offshore sea water, thus confirming the importance of the surf zone as an interim nursery area for postflexion R. holubi.

An estuary, according to the National Water Act of 1998, is a partially or fully enclosed body of water which is open periodically or permanently to the sea within which the sea water can be diluted, to an extent that is measurable with freshwater from inland. Estuaries and the lands surrounding them are places of transition from land to sea, and from freshwater to saltwater. Although influenced by the tides, estuaries are protected from the full force of ocean waves, winds, and storms by the reefs, barrier islands, or fingers of land, mud, or sand that surround them. South Africa’s estuaries are important and irreplaceable habitats, especially for prawns, fish, wading birds and mangroves. They are home to numerous plants and animals that live in water that is partly fresh and partly salty. Estuaries are also homes to growing coastal communities as increasing number of people occupy watersheds. However, estuaries are also threatened. One of the threats is reduced river water inflow. This study applies the contingent valuation method (CVM) to elicit user’s willingness to pay to mitigate the negative impacts of reduced freshwater inflow into selected five Eastern Cape and Kwazulu-Natal estuaries: the Sundays, Gamtoos, Mdloti, Mgeni and Mvoti estuaries. In addition to the contingent valuation method, the travel cost method was used to generate comparative values. The contingent valuation method is a technique to establish the value of a good (or service) that is not bought or sold in an actual market. The CVM establishes the economic value of the good by asking the users of an environmental good to state their willingness to pay (WTP) for a hypothetical project to prevent, or bring about, a change in the current condition of the environmental good. The users’ WTP is aggregated to establish a total willingness to pay (TWTP) for the population of the users of the environmental good.

The growth and accumulation of macroalgae in estuaries are a common sight throughout the world (Boyer and Fong, 2005). Because macroalgae establish such complex but important links with other components within an estuary, it is essential to know which variables control and regulate their occurrences. The type of algae that will occur in an estuary depends however, on the physical and chemical features of the particular estuary (Lobban and Harrison, 1994). The focus of this study was to document and provide a listing of algae from estuaries around the Eastern Cape coast of South Africa and describe the communities which form within each estuarine habitat. The questions posed were: Do algae assemblages differ in estuaries with different environmental conditions? Are different plant communities inhabited by different algae communities? Also, are algae diverse in estuaries that are in a pristine condition? The estuaries were Mngazana, Ngqusi/Nxaxo, Mtati, Mpekweni, East Kleinemonde, West Kleinemonde, Kariega, Bushmans, Kowie and the Sundays estuary. Percentage cover surveys were conducted and environmental parameters recorded to determine community structure of algae and their environmental tolerances. A total of 49 different macroalgal species were identified from 11 estuaries, which were dominated by Chlorophytes (23 species) and Rhodophytes (17 species). The Ochrophytes consisted of 10 species. The highest number of species recorded was 29 at the Bushmans estuary (March 2009), while the lowest number (4 species) was recorded at Mtati (October 2008). Common Chlorophytes found included Ulva prolifera, Chaetomorpha linum and Codium tenue. In the Division Ochrophyta, species from the Genus Ectocarpus were the most common. Of the red algae filamentous reds, Polysiphonia incompta and Polysiphonia kowiensis were the common algae found at estuaries. Salinity (p= 0.029861; n= 49) and temperature (p= 0.037641; n= 49) were the driving environmental parameters of estuaries and significantly influenced richness of species. In ordination analyses, patterns of biogeographic distribution were noticeable and were described by salinity. Four gradients caused by salinity were therefore found – which is inversely correlated to water clarity. Moreover, a clear split between temporarily open/closed and the permanently open estuaries was observed. Samples grouped into four communities presumably based on the similarity in conditions of estuaries. Within each estuarine community and major type of estuary there was a range of environmental conditions. However, the macroalgae within each community may not have been colonists of or found in greatest abundances in the estuaries of these communities per se, but may have grouped together in this manner based on the optimum growing conditions for them. Also, specific algal groups were not directly determined by the type of estuary they were found in; they were driven by environmental ranges rather. The results therefore support hypothesis one which states species distribution and diversity differ and are influenced by environmental gradients of the estuary. Although close species and habitat relationships were apparent from the ordination analyses, providing support for hypothesis two which states “Different plant communities in estuaries will be inhabited by different macroalgae communities”, the evidence was not substantial enough to provide sufficient support for the hypothesis. Lastly, the hypothesis “Macroalgae are diverse in estuaries that are in a pristine condition” was not accepted as highest species numbers were found in estuaries of greatest anthropogenic disturbance (e.g. Bushmans estuary) and not in estuaries which where ecologically more natural (e.g. Mtati estuary). By doing monthly macroalgal sampling over a period of one year for example one would obtain greater information of biodiversity, and patterns of macroalgal seasonality may be uncovered as well. This is an area of reasearch which needs to be investigated in the future as it would greatly add to the understanding of the role macroalge have in an estuarine environment.

No description available.

Estuaries in South Africa are important nursery areas for the juveniles of many fish species. The condition of many of these systems has, however, deteriorated as a result of degradation caused by urban, industrial and agricultural development. An assessment of the role of harbours, particularly in KwaZulu Natal, as nursery grounds has therefore become an important issue. Durban Bay has undergone considerable changes since the mid-1800s and further developments are proposed. If these developments continue, they will result in the loss of large areas of the sandbanks, but Portnet has recognised the need to integrate environmental considerations into future port developments and operations. It was the overall aim of this study to establish the nature of the association of the juveniles of four common fish species viz. Pomadasys commersonnii, Gerres filamentosus, Liza dumerilii and Leiognathus equula with these sandbanks and, thereby assess the impact of their removal. It was found that all species were abundant on the sandbanks and that the diets of P. commersonnii, G. fiiamentosus and L. equuia were very similar, consisting primarily of bivalve siphon tips, benthic crustaceans and polychaetes. The respective contributions of each food type to the diet varied with species. The diet of L. dumerilii differed from that of the other three species, consisting primarily of benthic floc, foraminiferans, ostracods and sponge spicules. Despite differences in selectivity, it was concluded, from studies of the benthos in the harbour, that all four species, irrespective of size, were feeding on these sandbanks, as opposed to in the channels, throughout the year. Removal of the sandbanks for the construction of a new pier would, thus, result in the elimination of important feeding grounds for the juveniles of these four species. / Thesis (M.Sc.)-University of Natal, 1994.

A two-dimensional numerical model has been developed to simulate wave-current induced nearshore circulation patterns in beaches and surf zones. The wave model is based on the parabolic wave equation for mild slope beaches. The parabolic equation method has been chosen because it is a viable means of predicting the characteristics of surface waves in slowly varying domains and in its present form dissipation and wave breaking are also included. The two dimensional parabolic mild slope equation was discretised and solved in a fully implicit manner, so stability did not create a major problem. This wave model was then embedded into the existing numerical model DIVAST. The sediment transport formulae from Van Rijn was used to calculate the nearshore sediment transport rate.

Mangrove trees play a prominent role in coastal tropic and subtropical regions, providing habitat for many organisms and protecting shorelines against storm surges, high winds, erosion, and tsunamis. The motivation of this proposal is to understand the complex interaction of mangrove roots during tidal flow conditions using simplified physical models. In this dissertation, the mangrove roots were modeled with a circular array of cylinders with different porosities and spacing ratios. In addition, we modeled the flexibility of the roots by attaching rigid cylinders to hinge connectors. The models were tested in a water tunnel for a range of Reynolds number from 2200 to 11000. Additionally, we performed 2D flow visualization for different root models in a flowing soap film setup. We measured drag force and the instantanous streamwise velocity downstream of the models. Furthermore, we investigated the fluid dynamics downstream of the models using a 2-D time-resolved particle image velocimetry (PIV), and flow visualization. The result was analyzed to present time-averaged and time-resolved flow parameters including the velocity distribution, vorticity, streamline, Reynolds shear stress and turbulent kinetic energy. We found that the frequency of the vortex shedding increases as the diameter of the small cylinders decreases while the patch diameter is constant, therefore increasing the Strouhal number, St=fD/U By comparing the change of Strouhal numbers with a single solid cylinder, we introduced a new length scale, the “effective diameter”. In addition, the effective diameter of the patch decreases as the porosity increases. In addition, patch drag decreases linearly as the spacing ratio increases. For flexible cylinders, we found that a decrease in stiffness increases both patch drag and the wake deficit behind the patch in a similar fashion as increasing the blockage of the patch. The average drag coefficient decreased with increasing Reynolds number and with increasing porosity. We found that the Reynolds stress (−u′v′) peak is not only shifted in the vortex structure because of shear layer interference, but also the intensity was weakened by increasing the porosity, which causes a weakening of the buckling of vorticity layers leading to a decline in vortex strength as well as increase in wake elongation. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2017. / FAU Electronic Theses and Dissertations Collection

Peat soils are known to be a significant source of atmospheric greenhouse gasses. However, the releases of methane and carbon dioxide gasses from peat soils are currently not well understood, particularly since the timing of the releases are poorly constrained. Furthermore, most research work performed on peatlands has been focused on temperate to sub-arctic peatlands, while recent works have suggested that gas production rates from low-latitude peat soils are higher than those from colder climates. The purpose of the work proposed here is to introduce an autonomous Ground Penetrating Radar (GPR) method for investigating the timing of gas releases from peat soils at the lab scale utilizing samples originating from Maine and the Florida Everglades, and at the field scale in a Maine peatland. Geophysical data are supported by direct gas flux measurements using the flux chamber method enhanced by timelapse photography, and terrestrial LiDAR (TLS) monitoring surface deformation. / by William J. Wright. / Thesis (M.S.)--Florida Atlantic University, 2013. / Includes bibliography. / Mode of access: World Wide Web. / System requirements: Adobe Reader.

No contexto da necessidade de atracação de embarcações de maior porte em terminais portuários brasileiros, tanto privativos como públicos, considerando um aumento das exportações, intervenções de engenharia que possam significar ganhos nas dimensões das máximas embarcações permitidas podem representar substanciosos benefícios econômicos. Assim, este trabalho apresenta uma abordagem do conceito de Fundo Náutico, definido como profundidade até a qual as embarcações podem navegar sem que haja efeitos adversos na manobrabilidade das embarcações e danos no casco do navio, cujo objetivo é aumentar o calado máximo de embarcações em espaços náuticos cujo fundo apresente camadas de lama fluida. Devido às suas características reológicas, a lama fluida, de modo geral, permite que as embarcações naveguem com reduzida ou até negativa folga sob a quilha, respeitando-se o conceito estabelecido pelo Fundo Náutico. Exposta a importância sobre este conceito e suas peculiaridades relacionadas às características da lama fluida, como características reológicas e métodos para sua determinação, discutem-se as variações na espessura da camada de lama fluida e as variáveis ambientais que as condicionam, a partir de análise de levantamentos batimétricos de dupla frequência, dados densimétricos e aplicação de modelagem numérica, para a região da bacia de evolução do Complexo Portuário de Itajaí. Para esta região, observaram-se camadas de lama fluida entre 0,5 e 2,5 m, sendo que os resultados obtidos na modelagem indicam que esta variabilidade está associada ao regime de descarga sólida do rio Itajaí-açu. Além disto, a partir de uma análise comparativa entre os dados batimétricos e densimétricos, foi possível estabelecer que o fundo náutico na região pode estar associado a um valor de massa específica entre 1150 e 1200 kg/m³. / Considering the demand for mooring larger ships at Brazilian port terminals, both private and public, in a scenario of growing exports, engineering interventions that can provide improvements in the vessel\'s maximum allowed dimensions can represent significant profits. Hence, this work presents an approach of Nautical Bottom, defined as the maximum depth in which ships can navigate without significant adverse effects in ship control and maneuverability without physical damage, with the goal of raising the maximum ship draft allowed in nautical spaces with fluid mud beds. Due to its rheological properties, fluid mud, in general, allows for vessels navigate with low or negative under keel clearance, respecting the established Nautical Bottom concepts. Once highlighted the importance of these concepts, this study presents an analysis about fluid mud and Nautical Bottom concept analysis at Itajaí Port Complex (Santa Catarina, Brazil), one of the most important port areas in Brazil. This analysis was based on bathymetric surveys, density measurements and numerical modeling. In addition, fluid mud layer thickness at port areas can possibly vary according to hydrodynamics and sedimentologic variations. Fluid mud layer thickness varies from 0.5 to 2.5 meters at Itajai Port Complex turning basin. From numerical modeling results, it is possible to establish that the thickness variations of fluid mud layers are associated with fluvial sediment transport rates. Also, from the comparison between low frequencies bathymetric surveys and specific density measurements, it was possible to conclude that the reference specific density at the interest area is about 1150-1200 kg/m³, being very similar to reference densities adopted worldwide.