Estuaries are valuable ecosystems that are easily affected by human activities within the watershed. One determinant of water quality for in an estuary is the presence of suspended sediments. The use of satellite sensors to remotely sense visible and near-infrared reflectance allows for suspended particulate matter (SPM) and suspended particulate inorganic matter (SPIM) concentrations to be monitored on a repetitive synoptic scale. Previously presented algorithms for relating remote sensing reflectance (Rrs) and SPM/SPIM concentrations were evaluated for the Weeks Bay estuary in Alabama. Additionally, numerous potential SPM/SPIM concentration retrieval algorithms using the Landsat-8 satellite were determined through regression analysis, as well as through the consideration of the inherent optical properties of the water body. The most robust empirical algorithm produced an RMSE of 12.50% and utilized the band combination of Ln(Band4)/Ln(Band3), while the most robust semi-analytical algorithm produced an RMSE of 16.34% and utilized the band combination of Band4/Band3.

No description available.

Thesis (Ph.D.)--Massachusetts Institute of Technology, Dept. of Earth and Planetary Sciences, 1978. / Microfiche copy available in Archives and Science. / Bibliography: leaves 104-111. / by Nathan Hawley. / Ph.D.

The increasing concentration of carbon monoxide and other gases in the earth’s atmosphere is expected to cause temperatures on earth to increase. This condition, known as the greenhouse effect, could cause the sea level to rise due to the partial melting of the polar icecaps and the thermal expansion of the oceans. Such a rise in the sea level would affect the tides, currents, and sediment and salinity distributions within estuaries. To see the nature of these effects, a parametric study was performed on the Rappahannock River in Virginia with a two-dimensional, laterally averaged, time-dependent numerical model which simulates the movement of water and suspended sediment in the estuary. The model is a systematic sequence of mathematical procedures derived from the mass-balance equation and the equation of motion. These equations are solved through an explicit finite difference scheme. The astronomical tide, the increased height of the sea level due to the greenhouse effect and the additional tidal height due to a storm surge form the boundary conditions at the mouth of the river. Freshwater streamflows constitute the boundary condition at the upstream end of the estuary. A frequency analysis is performed for both the freshwater streamflows and the tidal heights. A procedure is developed which allows one to calculate the return period for various combinations of streamflow and tidal height. The results from each run of the estuary model are reviewed to study the tidal hydraulics and the longitudinal and vertical distributions of the sediment and salinity with and without the sea level rise. / Master of Science / incomplete_metadata

Utilizing field and modeling methodology, the effects of benthic micro-communities and physical transport mechanisms on sediment nutrient flux were investigated for two nearshore sediment types on Virginia’s Eastern Shore. Subtidal sandy mineral sediments were conducive to water transport and subsequently influenced by groundwater discharge to a greater degree than less permeable organic silt-clay sediments. Sediment ammonium and dissolved inorganic phosphorus (DIP) fluxes were strongly dependent on benthic aerobic respiration rates for silt-clay sediments as compared to sandy substrates. In situ studies indicated a significant decrease in ammonium and DIP fluxes as a result of nutrient uptake by benthic microalgal communities. The importance of advective solute transport mechanisms within nearshore sediments was demonstrated by a one-dimensional, steady-state model for a conservative substance. By incorporating dispersive and advective transport mechanisms, model predictability for chloride sediment flux was significantly improved as compared to a diffusion based model. Model results indicated that velocity associated transport of solutes, driven by elevated upland hydraulic heads, are significant and can dominate over diffusive flux in sandy sediment. In contrast, silt-clay sediment solute fluxes were dominated by dispersive processes. The importance of sedimentary nutrient flux in a shallow coastal embayment was demonstrated by short water column DIN and DIP turnover times with respect to sediment nutrient fluxes, by the significance of ammonium and DIP sediment nutrient fluxes with respect to phytoplankton nutrient assimilation demands, and by the relative importance of benthic respiration with respect to water column primary productivity. In order to evaluate water quality impacts of groundwater discharge on a larger scale, a surface, groundwater, and in situ groundwater discharge water quality survey was conducted in a shallow estuarine embayment. Sediment inorganic nitrogen fluxes were elevated adjacent to agricultural fields without benefit of a vegetative buffer. Nitrogen contributions from direct groundwater discharge and groundwater derived creek inputs appear to be of significant importance in terms of water quality and phytoplankton nitrogen assimilation demands. In summary, this study highlights the importance of nearshore sediments with regards to estuarine nutrient water quality and ecological processes. Neglecting groundwater discharge as a nutrient source and transport mechanism and potential biotic effects occurring at the sediment-water interface may lead to serious misinterpretation of data and error in water quality strategies. / Ph. D.

The tunicate Styela plicata (Ascidiacea) was investigated for its potential use in bioremediation of bacteria and microalgae blooms from estuarine waters. Salinity tolerances, filtration rate, substrate selection, and effects on digested bacteria and ichthyofaunal communities were examined. If acclimated slowly, Styela can be placed in salinities as low as 24 parts per thousand (ppt) before increased fatalities result. An immediate decrease in salinity from 32 ppt to 20 ppt was not detrimental at short term exposure (four days). One average-sized (~40g) Styela, exposed to 105 and 106 bacteria or microalgae mL-1, can filter as much as 4.7 L hr-1 and 3.3 L hr-1, respectively. Individual tunicate filtration rates varied from hour to hour, independent of organism size, indicating that filtration rates for this species would be better reported on a population basis rather than on an individual weight or size basis. Bacterial viability in tunicate feces was assessed by ATP analysis. Bacteria were found to be non-viable after passage through the tunicate digestive tract. Filtration of eggs or larvae of recreationally or commercially important fish is of concern. The smallest eggs (~0.6mm) reported in the Indian River Lagoon belong to Cynoscion nebulosus (spotted seatrout) and Bairdiella chrysoura (silver perch). Over the course of two hours, 72.5% of 0.5 mm glass beads (simulated fish eggs) were initially retained, but many were later expelled by the tunicates. For 1.0 mm beads, 49.4% were initially retained and for 2.0 mm beads, 43.5% were initially retained. Neither the size of the oral siphon nor the size of the overall animal was correlated to bead retention. Substrate selection was investigated using the tunicate Phallusia nigra. / Newly hatched larvae preferred settling on wood (53.7%), as compared to polyethylene (30.9%), high-density polyethylene (13.0%), and polyvinyl chloride (2.4%). Overall, results of this study indicate S. plicata is very effective at removing bacteria and microalgae from estuarine waters. However, further testing is warranted regarding the unwanted removal of fish eggs and larvae before utilization of S. plicata for bioremedial purposes. / by Lisa Denham Draughon. / Thesis (Ph.D.)--Florida Atlantic University, 2010. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2010. Mode of access: World Wide Web.

This study assessed the importance of overwash and breaching events on the ichthyofaunal community structure in the medium-sized temporarily open/closed Mpekweni Estuary located on the southeast coastline of southern Africa. The fish in the littoral zone of the estuary were sampled using a 5m seine net while the channel region was sampled using two nets, a smaller meshed 30m seine net to target the estuarine spawning species and the juvenile estuarine-dependant marine spawners, and a larger meshed 50m seine net to target the larger marine and freshwater spawning species. Intensive monthly sampling over two years provided data on selected physico-chemical and biological parameters. During the two year sampling period from November 2005 to October 2007 the estuary breached in late July 2006 and remained open till the sandbar re-formed across the mouth in late December 2006. Thus, sampling encompassed three open/closed phases 1) initial closed period, 2) open period and 3) re-closed period after the berm was re-formed. The open period was divided into two phases 1) the out-flow phase and 2) the tidal phase. A total of 36 fish species representing 19 families were sampled using the various seine nets employed during the investigation. In the littoral zone, the estuarine spawners (Estuarine Utilisation Category, [EUC] I), mainly the Gobiidae, Glossogobius callidus, dominated the samples numerically and by biomass. The smaller estuarine spawning species sampled in the channel were numerically dominated by Gilchristella aestuaria in conjunction with two other EUC I species, Atherina breviceps and G. callidus. The estuarine-dependant marine spawners (EUC II), however, dominated the ichthyofaunal biomass of the channel. The abundance and biomass of the larger species targeted were dominated by estuarine-dependant marine spawning species (EUC II), principally Rhabdosargus holubi. During the closed periods of the estuary, total fish abundance and biomass displayed weak seasonal patterns. The breaching event and subsequent open period was associated with a decrease in the total abundances of fish in the littoral zone and channel of the estuary, reflecting the out-flow of estuarine biomass-rich water into the marine environment. The breaching event coincided with a shift in the community composition of the ichthyofauna, reflecting the recruitment of marine spawning species into the estuary. Numerical analysis identified two distinct spatial fish communities within the estuary, a community associated with the mouth region and one comprising the rest of the estuary. The absence of any further spatial patterns in the ichthyofaunal community structure within the Mpekweni Estuary appear to be ascribed to the virtual absence of horizontal patterns in physico-chemical and biological parameters recorded in the system. Cohort analyses were employed to determine possible recruitment events for selected estuarine and marine spawning species. The estuarine spawning species displayed continuous recruitment patterns throughout the study, which appeared to be unaffected by the breaching event. Conversely, the larger marine spawning species displayed multiple cohorts, indicating non-continuous recruitment. Subsequent retrospective analysis of cohorts for the different species identified summer recruitment peaks that coincided with the breaching event and open period. Minor recruitment of marine spawning species also occurred during overwash events. The recruitment of ichthyofauna into the estuary was quantified during three distinct hydrological events: overwash, out-flow phase immediately after breaching and tidal phase during the period when the mouth was open. Estimates of fish recruitment were highest during the outflow phase immediately after the estuary breached and declined as the estuary became tidally inundated with marine water. Although not as high as the outflow and tidal phases, recruitment was evident during overwash events. Results of the current study highlight the importance of both breaching and overwashing events in structuring the ichthyofaunal community composition in a medium-sized southern African temporarily open/closed estuary. These results are broadly in agreement with similar studies conducted both locally and in other regions of the world.

The role of the sandprawn, Callichirus (=Callianassa) kraussi (Stebbing), as an ecosystem engineer was assessed in the lower reach of the temporarily open/closed Kasouga Estuary situated along the Eastern Cape coastline of southern Africa over the period April 2010 to June 2011. The study comprised two distinct components, a field study and a caging experiment. The field study assessed the correlation between sand prawn densities and selected physico-chemical (organic content of the sediment and bioturbation) and biological (microphytobenthic algal concentrations and macrobenthic abundance and biomass) variables in 50 quadrants in the lower reach of the estuary. Densities of the sand prawn within the quadrants ranged from 0 to 156 ind m⁻² (mean = 37 ind m⁻²). There were no significant correlations between the densities of the sandprawn and the estimates of the organic content of the sediment and the abundance and biomass of the macrofauna (P > 0.05 in all cases). Numerical analyses failed to identify any effect of the sandprawn density on the macrofaunal community structure. The rate of bioturbation was, however, strongly correlated to the sand prawn density. Similarly, the microphytobenthic alga concentrations were significantly negatively correlated to the sand prawn densities ((P < 0.05). The absence of any distinct impact of the sandprawn on the macrobenthic community structure appeared to be related to their low densities in the lower reach of the estuary during the study. To better understand the role of the sandprawn as an ecosystem engineer, a caging experiment was conducted using inclusion and exclusion treatments (n= 5 for each treatment). Densities of the sandprawn in the inclusion treatments (80 ind m⁻²) were in the range of the natural densities within the estuary. The experiment was conducted over a period of 18 weeks in the lower reach of the estuary during summer. The presence of the sandprawn, C kraussi, contributed to a significant decrease in the microphytobenthic algal concentrations and the abundance and biomass of the macrofauna (P < 0.05 in all cases). The decrease in the microphytobenthic algal concentrations in the presence of the sandprawn appeared to be related to the res-suspension of the sediments (bioturbation) generated by the burrowing and feeding activities of the sandprawn. The observed decrease in macrofaunal abundances and biomass in the inclusion treatments appeared to be mediated by both the decreased food availability (mainly the microphytobenthic algae) and the burial of organisms within the sediments. Numerical analysis indicated that the sandprawn did, however, not contribute to a change in the species composition of the macrofauna. Results of the current study indicate that C.kraussi plays an important role in structuring the invertebrate community and energy flow within temporarily/open closed Kasouga Estuary.

Larval fish and zooplankton assemblages were studied in nine south and west coast estuaries in the cool-temperate and the cool/warm-temperate boundary region between June 2003 and March 2004. This study served to provide new information on previously unstudied estuaries and expand on existing knowledge of larval fish and zooplankton assemblages associated with various estuary types. The south and west coast estuaries sampled in this study showed lower salinities (12.2 - 13.7), lower water temperatures (14.5 - 16.9 °C) and higher turbidities (k = 0.02 - 0.04) in winter and spring while higher salinities (21.7 - 21.8), higher water temperatures (21.7 - 23.1°C) and lower turbidities (k <0.02) were observed in summer and autumn. Mean winter and summer water temperatures in estuaries were lower than those observed in warm-temperate and subtropical systems by other researchers. A total of 49274 larval fishes were caught, comprising 9 orders, 20 families, 29 genera and 47 taxa. The clupeid Gilchristella aestuaria (78.8 %) dominated the larval fish assemblages and occurred in all estuaries. The majority (70 %) of identified species are endemic to southern Africa and 96.4 % of larval fishes caught were estuary-resident species. The zooplankton study yielded a total of 44 taxa, comprising 7 phyla, >20 orders and >35 families. The copepod Pseudodiaptomus hessei dominated (59 %) the zooplankton and occurred in similar densities to those observed in other South African estuaries. Larval fish and zooplankton varied across seasons, peaking simultaneously in summer although zooplankton showed additional density peaks during the closed phase of some estuaries. Both plankton components were more abundant in the oligohaline and mesohaline zones within the estuaries. Freshwater input, estuary type and the biogeography of the area influenced the composition and structure of larval fish and zooplankton assemblages in these estuaries. The findings suggest that the estuaries are functioning as successful breeding areas for the larvae of endemic estuary-resident fish species and that these estuaries have to be managed to ensure an adequate freshwater supply to maintain the biological integrity of the ecosystem, specially the maintenance of the highly productive River-Estuary Interface (REI) regions.

The ichthyofaunal community structure, population dynamics and movement patterns in the small temporarily open/closed (TOCE) Grant’s Valley estuary, situated along the Eastern Cape coastline, were investigated over the period May 2004 to April 2005. Community structure in the littoral zone was assessed, while growth of selected ichthyofaunal species was investigated using the MULTIFAN model. Population size was assessed using mark recapture models and movement within the estuary using the Hilborn (1990) model. Total ichthyofaunal densities and biomass within the littoral zone ranged between 0.31 to 21.45 fish m⁻² and 0.20 to 4.67 g wwt m⁻², with the highest values typically recorded during the summer. Results of the study indicated that the ichthyofaunal community structure within the estuary was closely linked to the mouth phase and the establishment of a link to the marine environment via overtopping events. In the absence of any link to the sea, the ichthyofaunal community was numerically dominated by estuarine resident species, mainly Gilchristella aestuaria and to a lesser extent, by the river goby, Glossogobius callidus which collectively comprised ca. 88% of all fish sampled. The establishment of the link to the marine environment contributed to an increased contribution of marine breeding species (e.g. Rhabdosargus holubi, Myxus capensis and Atherina breviceps) to the total ichthyofaunal abundances. In contrast, total ichthyofaunal biomass was almost always dominated by marine breeding species by virtue of their larger sizes. Results of hierarchical cluster analyses did not identify any spatial patterns in the ichthyofaunal community within the littoral zone. Results of MULTIFAN analysis indicated estuarine resident fish species bred over an extended period with peaks occurring in the summer months. Conversely, marine breeding fish were shown to recruit into the estuary following overtopping and breaching events. Results of the mark-recapture experiment indicated a population of ca. 12 000 (11 219 – 13 311) individuals greater than 50mm SL. Marine-breeding species (R. holubi, Monodactylus falciformis, and two mullet species) numerically dominated the ichthyofauna, possibly as a result of their effective use of overtopping events. The two mullet species, M. capensis and Liza richardsonii, and the Cape stumpnose, R. holubi moved extensively throughout the estuary, while the remaining species exhibited restricted movement patterns possibly due to the preference for refuge and foraging areas associated with reed beds. The observed movement patterns of individual fish species appeared to be associated with both foraging behaviour and habitat selection.