<p>Melanin is a ubiquitous biological pigment found in bacteria, fungi, plants, and animals. It has a diverse range of ecological and biochemical functions including display, evasion, photoprotection, detoxification, and metal scavenging. Two forms of melanin produced from different molecular precursors are present in nature - eumelanin (dark brown-black in color) and pheomelanin (orange-red in color). Both eumelanin and pheomelanin are complex highly cross-linked biopolymers that are found intertwined with proteins, lipids, and metal ions in nature. </p><p> </p><p>Recent reports have used morphological evidence to suggest the presence of melanin in the fossil record. These studies have been met with criticism due to their lack of chemical evidence to support melanin identification. This dissertation describes chemical approaches to unambiguously verify the presence of melanin in the fossil record and characterize the ancient pigment. It also explores the limitations for the survival of melanin in the fossil record and the possibility that melanin acts as a protective matrix to preserve other biomolecules that are embedded in the pigment. </p><p>Melanin has unique chemical signatures that are commonly used to characterize and compare the pigment of modern organisms. We applied these chemical approaches to the study of fossil pigmentation. Analysis of the black pigmentation of two > 160 million year old (Mya) Jurassic cephalopod ink sacs provided the first conclusive evidence for eumelanin in the fossil record. The preserved fossil eumelanin was then compared to modern cephalopod eumelanin from Sepia officinalis. Using these chemical approaches we found that fossil eumelanin was chemically and morphologically identical to S. officinalis eumelanin. </p><p> Although there is mounting chemical evidence for the presence and preservation of melanin in the fossil record, there is very little data constraining its long-term survival. We applied the analytical approaches designed to study fossil melanins and techniques used to study fossil sediments to compare the fossil inks from three deposits of similar age and lithology, but different maturation histories. Specifically, two ~ 180 Mya fossil ink sacs from a site that has entered the oil window in Holzmaden, Germany were compared to the previously analyzed fossil inks from two less mature sites in southern England. The chemistry of eumelanin was shown to alter at the onset of the oil window regardless of the age of the specimen. The decrease in surviving melanin was accompanied by an increase in the relative abundance of organic macromolecular material (kerogen), but no consistent change in melanin morphology. </p><p> Finally, the role of melanin as a matrix that enhances the preservation of other biomolecules in the fossil record was considered. Proteins, commonly associated with melanin in modern organisms, were discovered in the aforementioned fossil ink sacs during full-scale chemical analysis. The amino acid profile of the protein in each fossil specimen was determined with an amino acid analyzer and compared to the amino acid profile the protein in modern S. officinalis. Statistical analysis of the amino acid distributions indicated that there is no significant difference between the amino acid profile of modern and fossil melanins. In order to verify the ancient origin of the amino acids in the fossil ink sacs, the ratio of D/L amino acid isomers was determined. While the proteins of living organisms consist of only L-amino acids, post-mortem the amino acids slowly convert from L to D form until they reach equilibrium (D/L = 1). This process is called racemization. The amino acids in the fossil ink sacs were racemized, which suggests their ancient origin. This marks the oldest determination of protein in a fossil system and provides evidence that the longevity of proteins may be enhanced when associated with melanin.</p> / Dissertation

In this thesis we examine key structure-property relationships associated with eumelanin's photophysical properties. This has involved characterizing both the molecular and supramolecular structure of eumelanin, and examining how these relate to eumalanin's key optical properties that are relevant to their their role in the biosphere as photoprotectants. Using low-voltage high resolution transmission electron microscopy we definitively show that sheets of proto-molecules stack to form nanostructures. The inter-sheet spacings within these structures are between 3.7 and 4.0 Å consistent with non-covalent pie-pie stacking in heteroaromatic systems. Stacking interactions in similarly structured aromatic macromolecules play an important role in non-radiative energy dissipation and we propose that this may also be the case in the eumelanin system. We also examine the recently proposed hypothesis that excited state intramolecular proton transfer may play a role in the photophysics of 5,6-dihydoxyindole carboxylic acid, a key eumelanin monomer. The experimental results acquired in this study indicate that this hypothesis needs to be carefully re-examined and its justification would require more extensive experimental support. Key optical properties of 5,6-dihydoxyindole carboxylic acid are re-evaluated in an inert aprotic solvent and these have provided some insight into the electronic structure as well as the rates of radiative and non-radiative decay in this important eumelanin monomer. We go on to show how the structure of eumelanin can be manipulated to produce eumelanin thin films. These films display electrical conductivities comparable with amorphous silicon, as well as a host of other interesting and potentially useful optoelectronic properties. The results show great promise for eumelanin-based applications such as chemi-sensors (in a variety of architectures including organic field effect transistors with chemi-sensitive channels) and bolometric photon detectors.

In this thesis we examine key structure-property relationships associated with eumelanin's photophysical properties. This has involved characterizing both the molecular and supramolecular structure of eumelanin, and examining how these relate to eumalanin's key optical properties that are relevant to their their role in the biosphere as photoprotectants. Using low-voltage high resolution transmission electron microscopy we definitively show that sheets of proto-molecules stack to form nanostructures. The inter-sheet spacings within these structures are between 3.7 and 4.0 Å consistent with non-covalent pie-pie stacking in heteroaromatic systems. Stacking interactions in similarly structured aromatic macromolecules play an important role in non-radiative energy dissipation and we propose that this may also be the case in the eumelanin system. We also examine the recently proposed hypothesis that excited state intramolecular proton transfer may play a role in the photophysics of 5,6-dihydoxyindole carboxylic acid, a key eumelanin monomer. The experimental results acquired in this study indicate that this hypothesis needs to be carefully re-examined and its justification would require more extensive experimental support. Key optical properties of 5,6-dihydoxyindole carboxylic acid are re-evaluated in an inert aprotic solvent and these have provided some insight into the electronic structure as well as the rates of radiative and non-radiative decay in this important eumelanin monomer. We go on to show how the structure of eumelanin can be manipulated to produce eumelanin thin films. These films display electrical conductivities comparable with amorphous silicon, as well as a host of other interesting and potentially useful optoelectronic properties. The results show great promise for eumelanin-based applications such as chemi-sensors (in a variety of architectures including organic field effect transistors with chemi-sensitive channels) and bolometric photon detectors.

In this thesis we examine key structure-property relationships associated with eumelanin's photophysical properties. This has involved characterizing both the molecular and supramolecular structure of eumelanin, and examining how these relate to eumalanin's key optical properties that are relevant to their their role in the biosphere as photoprotectants. Using low-voltage high resolution transmission electron microscopy we definitively show that sheets of proto-molecules stack to form nanostructures. The inter-sheet spacings within these structures are between 3.7 and 4.0 Å consistent with non-covalent pie-pie stacking in heteroaromatic systems. Stacking interactions in similarly structured aromatic macromolecules play an important role in non-radiative energy dissipation and we propose that this may also be the case in the eumelanin system. We also examine the recently proposed hypothesis that excited state intramolecular proton transfer may play a role in the photophysics of 5,6-dihydoxyindole carboxylic acid, a key eumelanin monomer. The experimental results acquired in this study indicate that this hypothesis needs to be carefully re-examined and its justification would require more extensive experimental support. Key optical properties of 5,6-dihydoxyindole carboxylic acid are re-evaluated in an inert aprotic solvent and these have provided some insight into the electronic structure as well as the rates of radiative and non-radiative decay in this important eumelanin monomer. We go on to show how the structure of eumelanin can be manipulated to produce eumelanin thin films. These films display electrical conductivities comparable with amorphous silicon, as well as a host of other interesting and potentially useful optoelectronic properties. The results show great promise for eumelanin-based applications such as chemi-sensors (in a variety of architectures including organic field effect transistors with chemi-sensitive channels) and bolometric photon detectors.

No / The skin pigment melanin is produced in melanocytes in highly specialized organelles known as melanosomes. Melanosomes are related to the organelles of the endosomal/lysosomal pathway and can have a low internal pH. In the present study we have shown that melanin synthesis in human pigment cell lysates is maximal at pH 6.8. We therefore investigated the role of intramelanosomal pH as a possible control mechanism for melanogenesis. To do this we examined the effect of neutralizing melanosomal pH on tyrosinase activity and melanogenesis in 11 human melanocyte cultures and in 3 melanoma lines. All melanocyte cultures (9 of 9) from Caucasian skin as well as two melanomacell lines with comparable melanogenic activity showed rapid (within 24 h) increases in melanogenesis in response to neutralization of melanosomal pH. Chemical analysis of total melanin indicated a preferential increase in eumelanin production. Electron microscopy revealed an accumulation of melanin and increased maturation of melanosomes in response to pH neutralization. In summary, our findings show that: (i) near neutral melanosomal pH is optimal for human tyrosinase activity and melanogenesis; (ii) melanin production in Caucasian melanocytes is suppressed by low melanosomal pH; (iii) the ratio of eumelanin/phaeomelanin production and maturation rate of melanosomes can be regulated by melanosomal pH. We conclude that melanosomal pH is an essential factor which regulates multiple stages of melanin production. Furthermore, since we have recently identified that pink locus product (P protein) mediates neutralization of melanosomal pH, we propose that P protein is a key control point for skin pigmentation. We would further propose that the wide variations in both constitutive and facultative skin pigmentation seen in the human population could be associated with the high degree of P-locus polymorphism.

<p>Melanin is a biological pigment that is ubiquitous in nature and generally produced within melanosomes, specialized organelles. Typically, melanin is categorized into two distinct classes, based on color and molecular precursor: eumelanin (brown-black) and pheomelanin (yellow-red). Whereas much is known regarding the molecular precursors to the two pigments, an understanding of their resulting molecular structure remains elusive. Despite this lack of knowledge, several functions are attributed to the pigments, including photoprotection and photosensitization. Epidemiological data for skin and ocular cancers have observed an increased incidence for increased relative concentrations of pheomelanin. Furthermore, eumelanin is generally identified as photoprotective and antioxidant, whereas pheomelanin is generally identified as photoreactive and pro-oxidant. This thesis describes the photophysical properties of the naturally-occuring melanin pigments and presents new insights into their roles within the context of skin and ocular cancers.</p><p> Photoemission electron microscopy provides a unique opportunity to probe the complex photoproperties of melanins contained within intact melanosomes isolated from tissues of bovine and human eyes. Photoionization threshold potentials characteristic of eumelanin and pheomelanin have been determined and are used to investigate the molecular architecture of the pigments within the melanosome. Furthermore, a novel approach to photoemission electron microscopy is used to obtain the first direct measurements of the absorption coefficients from intact melanosomes. </p><p> Human iridal stroma melanosomes are comprised of both eumelanin and pheomelanin in various ratios according to iris color; dark brown and blue-green iris melanosomes are characterized by a eumelanin:pheomelanin ratio of 14.8 and 1.3, respectively. Despite the significant difference in the overall pigment composition, a common eumelanin surface photoionization threshold is obtained for both melanosomes. This data indicates that within the melanosome, the phototoxic pheomelanin pigment is encased by eumelanin. This structure mitigates the adverse photochemical properties of pheomelanin. However, damage to the eumelanic exterior and or significant reduction in the amount of eumelanin present could compromise the protective ability of eumelanin, providing mechanisms for exposure of pheomelanin and consequently contributing to oxidative stress.</p><p> The absorption spectra of intact melanosomes of varying melanin compositions were determined over the spectral range from 244 to 310 nm. The absorption spectra of eumelanic melanosomes are similar regardless of monomer composition or embryonic origin. Furthermore, the absorption spectra of melanosomes containing a mixture of pigments were similar to those containing pure eumelanin, arguing that the absorption properties of the melanosome are maintained regardless of increased pheomelanin composition. Therefore, the correlation between epidemiological data and the eumelanin:pheomelanin ratio is not predicted to be a reflection of the melanosome's decreased ability to attenuate biologically relevant wavelengths, but instead is predicted to be a reflection of the different photoreactivities of the melanin pigments contained within.</p> / Dissertation

Eumelanin ist ein Fluorophor mit teilweise recht ungewöhnlichen spektralen Eigenschaften. Unter anderem konnten in früheren Veröffentlichungen Unterschiede zwischen dem 1- und 2-photonen-angeregtem Fluoreszenzspektrum beobachtet werden, weshalb im nichtlinearen Anregungsfall ein schrittweiser Anregungsprozess vermutet wurde. Um diese und weitere optische Eigenschaften des Eumelanins besser zu verstehen, wurden in der vorliegenden Arbeit vielfältige messmethodische Ansätze der linearen und nichtlinearen Optik an synthetischem Eumelanin in 0,1M NaOH verfolgt. Aus den Ergebnissen wurde ein Modell abgeleitet, welches die beobachteten photonischen Eigenschaften konsistent beschreibt. In diesem kaskadierten Zustandsmodell (Kaskaden-Modell) wird die aufgenommene Photonenenergie schrittweise von Anregungszuständen hoher Übergangsenergien zu Anregungszuständen niedrigerer Übergangsenergien transferiert. Messungen der transienten Absorption ergaben dominante Anteile mit kurzen Lebensdauern im ps-Bereich und ließen damit auf eine hohe Relaxationsgeschwindigkeit entlang der Kaskade schließen. Durch Untersuchung der nichtlinear angeregten Fluoreszenz von verschieden großen Eumelanin-Aggregaten konnte gezeigt werden, dass Unterschiede zwischen dem linear und nichtlinear angeregten Fluoreszenzspektrum nicht nur durch einen schrittweisen Anregungsprozess bei nichtlinearer Anregung sondern auch durch Unterschiede in den Verhältnissen der Quantenausbeuten zwischen kleinen und großen Aggregaten beim Wechsel von linearer zu nichtlinearer Anregung begründet sein können. Durch Bestimmung des Anregungswirkungsquerschnitts und der Anregungspulsdauer-Abhängigkeit der nichtlinear angeregten Fluoreszenz von Eumelanin konnte jedoch ein schrittweiser 2-Photonen-Anregungsprozess über einen Zwischenzustand mit Lebendsdauern im ps-Bereich nachgewiesen werden. / Eumelanin is a fluorophor with some special spectral properties. In earlier publications for instance a difference between 1- and 2-photons-excited fluorescence (OPEF and TPEF) was observed. Therefore in the nonlinear case a stepwise excitation process was supposed. In this thesis extensive linear and nonlinear optical examinations of synthetical Eumelanin / 0,1M NaOH were done in order to reach a better understanding of this and further optical properties. A theoretical model could be formulated that describes the measured fluorescence behaviour consistently. In this so called cascade model the photonic energy of the excited molecule relaxes by a stepwise energy transfer between a multitude of electronic states with continuously decreasing energy. Examination of the nonlinear excited fluorescence of different aggregate sizes showed, that differences between the spectra of linear and nonlinear excited fluorescence can not only be explained by an stepwise excitation process by nonlinear excitation but also by the difference in the relation of quantum yields between smaller and bigger aggregates by the change from linear to nonlinear excitation. In spite of this a stepwise 2-photons-excitation-process via an intermediate state with a lifetime in the picosecond-range had also been proved by determinations of the excitation cross section and the TPEF-intensity dependency on the pulse duration.

Melanins are a class of bio-macromolecules that are found throughout the biosphere. They fulfill various functions in human beings, which makes them a long studied substance in medicine and biology. Furthermore they possess a set of rare and special physico-chemical properties which include featureless broad band absorption in the UV-Vis spectrum and condensed phase electrical conduction. Many scientists have interpreted their findings in terms of an amorphous semiconductor model, but this was done under the a priori assumption that charge transport in melanin is electronic. However, a very strong dependence of melanin’s electrical properties on its level of hydration has recently led to speculations that the dominant charge carrier for high hydration is of protonic rather than electronic nature. This thesis will present direct evidence for electronic charge transport, found by investigating the influence of different environmental parameters on the conductivity of melanin. It will furthermore be shown that the hydration dependent conductivity of melanin can be understood in terms of a dielectric response model for an amorphous semiconductor. This establishment of the major charge carrier is an important step in the on-going effort to fully map the structure-property relationship of melanin and will help to understand its function in vivo. With the ultimate goal to make use of melanin’s fascinating properties, thin films, a new class of device has been characterized and investigated. These thin films, while exhibiting melanin’s characteristics, show improved mechanical stability, a very uniform morphology and a much faster response than standard pellet samples. They are furthermore applicable to standard polymer processing techniques which brings technological applications within reach.

No description available.

A fundamental goal in biological research is to gain an understanding of the evolutionary processes and genetic elements that drive speciation. Genes responsible for reproductive isolation in young divergent lineages are particularly poorly known. In this thesis, the speciation genetics of carrion (Corvus (corone) corone) and hooded (C. (corone) cornix) crows were studied. These taxa differ strikingly in colouration and meet in a narrow hybrid zone in Europe, yet appear to be very similar genetically. A major component of reproductive isolation is social selection on colour differences. First, we investigated the genetic basis of plumage divergence between carrion and hooded crows using a candidate gene approach. Nucleotide divergence was confirmed to be low, while there was no evidence for any of the sequenced genes to be associated with colour differences. Second, we performed a simulation study to assess the performance of RNA-seq, a relatively novel approach that we later employed ourselves. We asked how variation in transcriptome complexity and bioinformatic workflow affected the accuracy of gene expression profiling. We generally found reassuring robustness and made a number of specific recommendations. Third, we compared the corticosterone stress response of carrion and hooded crows. In accordance with the hypothesis that the degree of melanization and physiological traits are correlated due to pleiotropy, we found a higher stress response in hooded crows, and detected possibly associated gene expression in pituitary. Fourth, we investigated genomic divergence by assembling a hooded crow reference genome followed by whole-genome resequencing of four European population samples. Northern European carrion crows were more similar to hooded crows than to Spanish carrion crows, pointing towards rampant introgression far beyond the hybrid zone. Nevertheless, several narrow genomic regions harboured high between-taxon divergence and were potentially associated with phenotypic traits. Fifth, we compared whole-transcriptome gene expression profiles between crows, focusing on skin with developing feathers. We used a design that allowed to differentiate between taxon-specific, colour-specific and body patterning effects. Widespread underexpression of genes in the melanogenesis pathway was associated with grey colour, and we detected several genes that may contribute to colour divergence in this system.