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CA1 pyramidal cells have diverse biophysical properties, affected by development, experience, and agingMcKiernan, Erin C., Marrone, Diano F. 19 September 2017 (has links)
Neuron types (e.g., pyramidal cells) within one area of the brain are often considered homogeneous, despite variability in their biophysical properties. Here we review literature demonstrating variability in the electrical activity of CA1 hippocampal pyramidal cells (PCs), including responses to somatic current injection, synaptic stimulation, and spontaneous network-related activity. In addition, we describe how responses of CA1 PCs vary with development, experience, and aging, and some of the underlying ionic currents responsible. Finally, we suggest directions that may be the most impactful in expanding this knowledge, including the use of text and data mining to systematically study cellular heterogeneity in more depth; dynamical systems theory to understand and potentially classify neuron firing patterns; and mathematical modeling to study the interaction between cellular properties and network output. Our goals are to provide a synthesis of the literature for experimentalists studying CA1 PCs, to give theorists an idea of the rich diversity of behaviors models may need to reproduce to accurately represent these cells, and to provide suggestions for future research.
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A Multiclassifier Approach to Motor Unit Potential Classification for EMG Signal DecompositionRasheed, Sarbast January 2006 (has links)
EMG signal decomposition is the process of resolving a composite EMG signal into its constituent motor unit potential trains (classes) and it can be configured as a classification problem. An EMG signal detected by the tip of an inserted needle electrode is the superposition of the individual electrical contributions of the different motor units that are active, during a muscle contraction, and background interference.
<BR>This thesis addresses the process of EMG signal decomposition by developing an interactive classification system, which uses multiple classifier fusion techniques in order to achieve improved classification performance. The developed system combines heterogeneous sets of base classifier ensembles of different kinds and employs either a one level classifier fusion scheme or a hybrid classifier fusion approach.
<BR>The hybrid classifier fusion approach is applied as a two-stage combination process that uses a new aggregator module which consists of two combiners: the first at the abstract level of classifier fusion and the other at the measurement level of classifier fusion such that it uses both combiners in a complementary manner. Both combiners may be either data independent or the first combiner data independent and the second data dependent. For the purpose of experimentation, we used as first combiner the majority voting scheme, while we used as the second combiner one of the fixed combination rules behaving as a data independent combiner or the fuzzy integral with the lambda-fuzzy measure as an implicit data dependent combiner.
<BR>Once the set of motor unit potential trains are generated by the classifier fusion system, the firing pattern consistency statistics for each train are calculated to detect classification errors in an adaptive fashion. This firing pattern analysis allows the algorithm to modify the threshold of assertion required for assignment of a motor unit potential classification individually for each train based on an expectation of erroneous assignments.
<BR>The classifier ensembles consist of a set of different versions of the Certainty classifier, a set of classifiers based on the nearest neighbour decision rule: the fuzzy <em>k</em>-NN and the adaptive fuzzy <em>k</em>-NN classifiers, and a set of classifiers that use a correlation measure as an estimation of the degree of similarity between a pattern and a class template: the matched template filter classifiers and its adaptive counterpart. The base classifiers, besides being of different kinds, utilize different types of features and their performances were investigated using both real and simulated EMG signals of different complexities. The feature sets extracted include time-domain data, first- and second-order discrete derivative data, and wavelet-domain data.
<BR>Following the so-called <em>overproduce and choose</em> strategy to classifier ensemble combination, the developed system allows the construction of a large set of candidate base classifiers and then chooses, from the base classifiers pool, subsets of specified number of classifiers to form candidate classifier ensembles. The system then selects the classifier ensemble having the maximum degree of agreement by exploiting a diversity measure for designing classifier teams. The kappa statistic is used as the diversity measure to estimate the level of agreement between the base classifier outputs, i. e. , to measure the degree of decision similarity between the base classifiers. This mechanism of choosing the team's classifiers based on assessing the classifier agreement throughout all the trains and the unassigned category is applied during the one level classifier fusion scheme and the first combiner in the hybrid classifier fusion approach. For the second combiner in the hybrid classifier fusion approach, we choose team classifiers also based on kappa statistics but by assessing the classifiers agreement only across the unassigned category and choose those base classifiers having the minimum agreement.
<BR>Performance of the developed classifier fusion system, in both of its variants, i. e. , the one level scheme and the hybrid approach was evaluated using synthetic simulated signals of known properties and real signals and then compared it with the performance of the constituent base classifiers. Across the EMG signal data sets used, the hybrid approach had better average classification performance overall, specially in terms of reducing the number of classification errors.
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A Multiclassifier Approach to Motor Unit Potential Classification for EMG Signal DecompositionRasheed, Sarbast January 2006 (has links)
EMG signal decomposition is the process of resolving a composite EMG signal into its constituent motor unit potential trains (classes) and it can be configured as a classification problem. An EMG signal detected by the tip of an inserted needle electrode is the superposition of the individual electrical contributions of the different motor units that are active, during a muscle contraction, and background interference.
<BR>This thesis addresses the process of EMG signal decomposition by developing an interactive classification system, which uses multiple classifier fusion techniques in order to achieve improved classification performance. The developed system combines heterogeneous sets of base classifier ensembles of different kinds and employs either a one level classifier fusion scheme or a hybrid classifier fusion approach.
<BR>The hybrid classifier fusion approach is applied as a two-stage combination process that uses a new aggregator module which consists of two combiners: the first at the abstract level of classifier fusion and the other at the measurement level of classifier fusion such that it uses both combiners in a complementary manner. Both combiners may be either data independent or the first combiner data independent and the second data dependent. For the purpose of experimentation, we used as first combiner the majority voting scheme, while we used as the second combiner one of the fixed combination rules behaving as a data independent combiner or the fuzzy integral with the lambda-fuzzy measure as an implicit data dependent combiner.
<BR>Once the set of motor unit potential trains are generated by the classifier fusion system, the firing pattern consistency statistics for each train are calculated to detect classification errors in an adaptive fashion. This firing pattern analysis allows the algorithm to modify the threshold of assertion required for assignment of a motor unit potential classification individually for each train based on an expectation of erroneous assignments.
<BR>The classifier ensembles consist of a set of different versions of the Certainty classifier, a set of classifiers based on the nearest neighbour decision rule: the fuzzy <em>k</em>-NN and the adaptive fuzzy <em>k</em>-NN classifiers, and a set of classifiers that use a correlation measure as an estimation of the degree of similarity between a pattern and a class template: the matched template filter classifiers and its adaptive counterpart. The base classifiers, besides being of different kinds, utilize different types of features and their performances were investigated using both real and simulated EMG signals of different complexities. The feature sets extracted include time-domain data, first- and second-order discrete derivative data, and wavelet-domain data.
<BR>Following the so-called <em>overproduce and choose</em> strategy to classifier ensemble combination, the developed system allows the construction of a large set of candidate base classifiers and then chooses, from the base classifiers pool, subsets of specified number of classifiers to form candidate classifier ensembles. The system then selects the classifier ensemble having the maximum degree of agreement by exploiting a diversity measure for designing classifier teams. The kappa statistic is used as the diversity measure to estimate the level of agreement between the base classifier outputs, i. e. , to measure the degree of decision similarity between the base classifiers. This mechanism of choosing the team's classifiers based on assessing the classifier agreement throughout all the trains and the unassigned category is applied during the one level classifier fusion scheme and the first combiner in the hybrid classifier fusion approach. For the second combiner in the hybrid classifier fusion approach, we choose team classifiers also based on kappa statistics but by assessing the classifiers agreement only across the unassigned category and choose those base classifiers having the minimum agreement.
<BR>Performance of the developed classifier fusion system, in both of its variants, i. e. , the one level scheme and the hybrid approach was evaluated using synthetic simulated signals of known properties and real signals and then compared it with the performance of the constituent base classifiers. Across the EMG signal data sets used, the hybrid approach had better average classification performance overall, specially in terms of reducing the number of classification errors.
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EMG Signal Decomposition Using Motor Unit Potential Train ValidityParsaei, Hossein 09 1900 (has links)
Electromyographic (EMG) signal decomposition is the process of resolving an EMG signal into its component motor unit potential trains (MUPTs). The extracted MUPTs can aid in the diagnosis of neuromuscular disorders and the study of the neural control of movement, but only if they are valid trains. Before using decomposition results and the motor unit potential (MUP) shape and motor unit (MU) firing pattern information related to each active MU for either clinical or research purposes the fact that the extracted MUPTs are valid needs to be confirmed.
The existing MUPT validation methods are either time consuming or related to operator experience and skill. More importantly, they cannot be executed during automatic decomposition of EMG signals to assist with improving decomposition results. To overcome these issues, in this thesis the possibility of developing automatic MUPT validation algorithms has been explored. Several methods based on a combination of feature extraction techniques, cluster validation methods, supervised classification algorithms, and multiple classifier fusion techniques were developed. The developed methods, in general, use either the MU firing pattern or MUP-shape consistency of a MUPT, or both, to estimate its overall validity.
The performance of the developed systems was evaluated using a variety of MUPTs obtained from the decomposition of several simulated and real intramuscular EMG signals. Based on the results achieved, the methods that use only shape or only firing pattern information had higher generalization error than the systems that use both types of information. For the classifiers that use MU firing pattern information of a MUPT to determine its validity, the accuracy for invalid trains decreases as the number of missed-classification errors in trains increases. Likewise, for the methods that use MUP-shape information of a MUPT to determine its validity, the classification accuracy for invalid trains decreases as the within-train similarity of the invalid trains increase. Of the systems that use both shape and firing pattern information, those that separately estimate MU firing pattern validity and MUP-shape validity and then estimate the overall validity of a train by fusing these two indices using trainable fusion methods performed better than the single classifier scheme that estimates MUPT validity using a single classifier, especially for the real data used. Overall, the multi-classifier constructed using trainable logistic regression to aggregate base classifier outputs had the best performance with overall accuracy of 99.4% and 98.8% for simulated and real data, respectively.
The possibility of formulating an algorithm for automated editing MUPTs contaminated with a high number of false-classification errors (FCEs) during decomposition was also investigated. Ultimately, a robust method was developed for this purpose. Using a supervised classifier and MU firing pattern information provided by each MUPT, the developed algorithm first determines whether a given train is contaminated by a high number of FCEs and needs to be edited. For contaminated MUPTs, the method uses both MU firing pattern and MUP shape information to detect MUPs that were erroneously assigned to the train. Evaluation based on simulated and real MU firing patterns, shows that contaminated MUPTs could be detected with 84% and 81% accuracy for simulated and real data, respectively. For a given contaminated MUPT, the algorithm on average correctly classified around 92.1% of the MUPs of the MUPT.
The effectiveness of using the developed MUPT validation systems and the MUPT editing methods during EMG signal decomposition was investigated by integrating these algorithms into a certainty-based EMG signal decomposition algorithm. Overall, the decomposition accuracy for 32 simulated and 30 real EMG signals was improved by 7.5% (from 86.7% to 94.2%) and 3.4% (from 95.7% to 99.1%), respectively. A significant improvement was also achieved in correctly estimating the number of MUPTs represented in a set of detected MUPs. The simulated and real EMG signals used were comprised of 3–11 and 3–15 MUPTs, respectively.
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EMG Signal Decomposition Using Motor Unit Potential Train ValidityParsaei, Hossein 09 1900 (has links)
Electromyographic (EMG) signal decomposition is the process of resolving an EMG signal into its component motor unit potential trains (MUPTs). The extracted MUPTs can aid in the diagnosis of neuromuscular disorders and the study of the neural control of movement, but only if they are valid trains. Before using decomposition results and the motor unit potential (MUP) shape and motor unit (MU) firing pattern information related to each active MU for either clinical or research purposes the fact that the extracted MUPTs are valid needs to be confirmed.
The existing MUPT validation methods are either time consuming or related to operator experience and skill. More importantly, they cannot be executed during automatic decomposition of EMG signals to assist with improving decomposition results. To overcome these issues, in this thesis the possibility of developing automatic MUPT validation algorithms has been explored. Several methods based on a combination of feature extraction techniques, cluster validation methods, supervised classification algorithms, and multiple classifier fusion techniques were developed. The developed methods, in general, use either the MU firing pattern or MUP-shape consistency of a MUPT, or both, to estimate its overall validity.
The performance of the developed systems was evaluated using a variety of MUPTs obtained from the decomposition of several simulated and real intramuscular EMG signals. Based on the results achieved, the methods that use only shape or only firing pattern information had higher generalization error than the systems that use both types of information. For the classifiers that use MU firing pattern information of a MUPT to determine its validity, the accuracy for invalid trains decreases as the number of missed-classification errors in trains increases. Likewise, for the methods that use MUP-shape information of a MUPT to determine its validity, the classification accuracy for invalid trains decreases as the within-train similarity of the invalid trains increase. Of the systems that use both shape and firing pattern information, those that separately estimate MU firing pattern validity and MUP-shape validity and then estimate the overall validity of a train by fusing these two indices using trainable fusion methods performed better than the single classifier scheme that estimates MUPT validity using a single classifier, especially for the real data used. Overall, the multi-classifier constructed using trainable logistic regression to aggregate base classifier outputs had the best performance with overall accuracy of 99.4% and 98.8% for simulated and real data, respectively.
The possibility of formulating an algorithm for automated editing MUPTs contaminated with a high number of false-classification errors (FCEs) during decomposition was also investigated. Ultimately, a robust method was developed for this purpose. Using a supervised classifier and MU firing pattern information provided by each MUPT, the developed algorithm first determines whether a given train is contaminated by a high number of FCEs and needs to be edited. For contaminated MUPTs, the method uses both MU firing pattern and MUP shape information to detect MUPs that were erroneously assigned to the train. Evaluation based on simulated and real MU firing patterns, shows that contaminated MUPTs could be detected with 84% and 81% accuracy for simulated and real data, respectively. For a given contaminated MUPT, the algorithm on average correctly classified around 92.1% of the MUPs of the MUPT.
The effectiveness of using the developed MUPT validation systems and the MUPT editing methods during EMG signal decomposition was investigated by integrating these algorithms into a certainty-based EMG signal decomposition algorithm. Overall, the decomposition accuracy for 32 simulated and 30 real EMG signals was improved by 7.5% (from 86.7% to 94.2%) and 3.4% (from 95.7% to 99.1%), respectively. A significant improvement was also achieved in correctly estimating the number of MUPTs represented in a set of detected MUPs. The simulated and real EMG signals used were comprised of 3–11 and 3–15 MUPTs, respectively.
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