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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Montagem e análise do genoma parcial de Bacillus thuringiensis BAC3151 endofítico das folhas do feijoeiro comum (Phaseolus vulgaris) / Assembly and analysis of partial genome of Bacillus thuringiensis BAC3151 from the leaves of the common bean (Phaseolus vulgaris)

Lopes, Ralf Bruno Moura 25 February 2015 (has links)
Submitted by Amauri Alves (amauri.alves@ufv.br) on 2015-11-03T15:06:33Z No. of bitstreams: 1 texto completo.pdf: 1310681 bytes, checksum: ae3d027db5649c35ff8ef366ea4689e0 (MD5) / Made available in DSpace on 2015-11-03T15:06:33Z (GMT). No. of bitstreams: 1 texto completo.pdf: 1310681 bytes, checksum: ae3d027db5649c35ff8ef366ea4689e0 (MD5) Previous issue date: 2015-02-25 / Conselho Nacional de Desenvolvimento Científico e Tecnológico / Bacillus thuringiensis é uma espécie comumente associada a solos, insetos e plantas. Diversas linhagens são importantes para diferentes formas de controle biológico na agricultura e em outras áreas. Neste trabalho, foi sequenciado e anotado o genoma de B. thuringiensis BAC3151 endofítico do feijoeiro comum (Phaseolus vulgaris), um isolado que tem demonstrado atividade antimicrobiana contra bactérias patogênicas, incluindo bactérias fitopatogênicas do feijoeiro, possuindo, portanto, potencial para biocontrole de doenças nessa leguminosa. O genoma de BAC3151 e o de outros B. thuringiensis publicados forneceu a oportunidade para realizarmos análises de genômica comparativa entre diferentes linhagens dessa espécie dinâmica. A análise filogenômica utilizando os genes core das linhagens avaliadas agrupou BAC3151 com B. thuringiensis MC28 isolado de solo. Também foram identificados rearranjos cromossomais de grandes segmentos em BAC3151 e em outras linhagens, sugerindo que rearranjos podem contribuir para diferenças funcionais dessas linhagens. O genoma core das linhagens estudadas consistiu em 3413 sequências codificadoras de proteínas (CDSs) e incluiu as CDSs com funções fisiológicas gerais e de sobrevivência da espécie, enquanto as CDSs do genoma acessório foi associada a plasmídeos e a regiões cromossômicas específicas. Além disso, foram encontrados múltiplos genes potencialmente envolvidos na ação antagonista de BAC3151 contra outros micro-organismos e insetos, incluindo genes inseticidas, policetídeos sintases, bacteriocinas, peptídeos não-ribossomais sintetases, sideróforos, quitinases, N-acil homoserina lactonase e outros. Este estudo mostrou diversas variações entre linhagens de B. thuringiensis em nível genômico e também que B. thuringiensis BAC3151 endofítico do feijoeiro é potencialmente útil para o desenvolvimento de estratégias para o controle biológico de doenças nessa importante leguminosa. / Bacillus thuringiensis is a species commonly associated with soil, insects and plants. Several strains are important for different types of biological control in agriculture and other areas. In this work, was sequenced and annotated the genome of endophytic B. thuringiensis BAC3151 of common bean (Phaseolus vulgaris), an isolate that has demonstrated antimicrobial activity against pathogenic bacteria, including plant pathogenic bacteria of the common bean, having, in this way, potential for biocontrol of diseases in this legume. The genome of BAC3151 and the other B. thuringiensis published provided the opportunity to accomplish comparative genomic analysis between different strains of this dynamic species. The phylogenomic analysis using the core genes of the evaluated strains grouped BAC3151 with B. thuringiensis MC28 isolated from soil. Also, large chromosomal rearrangements were identified in BAC3151 and other strains, suggesting that rearrangements may contribute to functional differences of these strains. The core genome of the strains studied consisted of 3413 sequences encoding proteins (CDSs) and included the CDSs with general physiological functions and species survival, while the accessory genome CDSs were associated with plasmids and specific chromosomal regions. In addition, were found multiple potential genes involved in the antagonistic action of BAC3151 against other microorganisms and insects, including insecticidal genes, polyketide synthases, bacteriocins, nonribosomal peptide synthetases, siderophores, chitinases, N-acyl homoserine lactonase and others. This study showed several variations among strains of B. thuringiensis in genomic level and also that endophytic B. thuringiensis BAC3151 of common bean is potentially useful for the development of strategies for biological control in this important legume.

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