Doctor of Philosophy / Department of Chemistry / Christer B. Aakeroy / A family of three 2-aminopyrazine derivatives were prepared and co-crystallized with thirty carboxylic acids. Our theoretical charge calculations and experimental results from 90 reactions demonstrated that decreasing the charge on the hydrogen-bond acceptor sites results in a decrease of the supramolecular yield (the frequency of occurrence of the desired outcome). However, synthon crossover (undesired connectivity) was observed 7/12 times and was unavoidable due to competitive binding sites present in the N-heterocyclic bases chosen. To avoid synthon crossover, we used a strategy based on geometric bias. We utilized hydrogen-bonding two-point contacts and halogen-bonding single-point contacts for supramolecular reactions with the 2-aminopyrazine family of compounds. The desired two-point contact and single-point contact (N•••I or N•••Br) appeared in 9/9 times even in the presence of other potentially interfering intermolecular interactions. In addition, the role of charge in controlling the presence/absence of proton transfer was also highlighted. To establish a hierarchy in halogen-bonding interactions we designed and synthesized a library of eight molecules equipped with two different halogen bond donors and combined with variety of halogen-bond acceptors. 11 Halogen-bonded co-crystals were obtained; however, positional disorder of I/Br atoms obscures a complete analysis. This problem was solved by introducing asymmetry in the halogen-bond donor molecules. Finally, successfully demonstrated an unprecedented hierarchy in halogen-bond interactions based on electrostatics. We developed high-yielding Suzuki-Miyaura coupling reactions of tetraboronic pinacolyl ester cavitand to iodoarenes with a range of functional groups (electron withdrawing/donating group and a heterocycle) that show robustness and versatility, making it a ‘launch pad’ for the synthesis of many new cavitands in a facile manner. We have also successfully demonstrated cavitand functionalization from tetraaldehyde to tetraoximes using ‘solvent assisted grinding’, irrespective of the position of the aldehyde. Finally, we prepared tetra-substituted pyridyl and carboxylic acid cavitands having an ellipsoidal cavity capable of encapsulating asymmetric guest molecules and was subsequently obtained the first of its kind, C[subscript]2v symmetric molecular capsule with encapsulated asymmetric guest molecule.

Este projeto teve como finalidade construir uma fonte de luz baseada em lâmpadas halógenas que apresentasse características técnicas adequadas para aplicações em fotobiologia e fotomedicina, versátil e comercialmente viável. Foram analisadas as características de diferentes lâmpadas halógenas e realizados os experimentos com duas lâmpadas escolhidas, das quais utilizamos a lâmpada de menor divergência luminosa. Foi analisado também o material do corpo da fonte, com relação a características de aquecimento e peso, sendo escolhido um corpo de alumínio produzido industrialmente. Foram avaliadas as características ópticas das lentes, sendo escolhidas as lentes de vidro utilizadas em retroprojetores. Foram analisados os materiais e a construção de filtros térmicos para diminuir o aquecimento do objeto sob irradiação, sendo que escolhemos construir um filtro térmico próprio, que utiliza a água como absorvedor de calor. Medimos e avaliamos as características: espectrais, térmicas, a potência radiante (irradiância) e sua distribuição espacial de três protótipos, onde cada um recebeu modificações de modo a torná-los mais adequados para aplicações na fotoquimeoterapia. Foram também realizados testes preliminares de fotocitotoxicidade do protótipo final com o composto fotossensibilizador de nome comercial Photogem® aplicado em células tumorais de adenocarcinoma de colo retal humano (HT29), cujo resultado foi a ativação do composto fotossensibilizador e indução da morte celular. / The aim of this work was to produce a light source based in halogen lamps. This source should have appropriated technical characteristic for application in photobiology and photomedicine, it has easy operation and be commercially viable. The characteristics of different halogen lamps were evaluated and the lamp of smaller luminous divergence was chosen. We also have evaluated the material of the source holder, especially heating characteristics and weight; finally we chose an aluminum holder. Then, the lenses optical characteristics were studied, and we decided that the glass lenses used in projectors were the best. The materials and the construction of thermal filters were evaluated in order to reduce the heating of the object under irradiation, and we preferred to construct a thermal filter, that uses water as an heat absorber. The spectral and thermal characteristics, the radiant power (irradiance) and its space distribution of three prototypes were measured and evaluated, each one received modifications to become more appropriated to applications in photochemotherapy. We also made preliminaries tests of photocytotoxicity and the final prototype was used with the photosensitizer (Photogem®) in human colon carcinoma cell lines HT-29, resulting in the photosensitizer activation, that induced cellular death.

Os retardantes de chama são usados em diversos produtos, especialmente na indústria de eletroeletrônico. A irrevogável finalidade dos retardantes é proteger a vida das pessoas, reduzindo ferimentos e a destruição de propriedades. Contudo, devido à percepção dos riscos ambientais e toxicológicos presentes nas composições comerciais halogenadas e tóxicas, o seu uso está sendo proibido. Apesar da comum comercialização, novas pesquisas têm se desenvolvido visando à substituição destes retardantes, acompanhando medidas legais. Este trabalho visa estudar uma alternativa de aditivo retardante de chama livre de halogênio, tendo como matriz polimérica o copolímero de ABS, combinando aditivos: argila organofílica Cloisite 20A, argila Cloisite Na+ tratada com sal quaternário de fosfônio, polifosfato de amônio, melamina, partículas micrométricas e nanométricas de hidróxido de alumínio, dióxido de titânio e sílica formando assim um compósito. Para a caracterização foram realizados ensaios de térmicos de TGA e DSC, ensaios mecânicos de resistência à tração e resistência ao impacto Izod sem entalhe, avaliação da morfologia através de MEV e MEV-FEG, análise de difração de Raios-X (DRX), espectroscopia de infravermelho acoplado ao acessório de reflexão atenuada (FTIR-ATR), ensaios de retardância à chama com base na norma ASTM D635-10 e norma UL 94. Por meio dos resultados foi possível observar efeitos da adição dos aditivos na obtenção de compósitos de ABS com aditivos retardante de chama inertes, que atingiram classificação V-0 e V-2 na Ul 94, com redução da velocidade propagação da chama entre 18% e 80% conforme a ASTM D635. / The flame retardant are used in several products, specialty for electrical and electronics industry. The irrevocable finality from flame retardant is fires protection to help safeguard of people, reduce injury and reduce destruction of property. However, due the perception of environmental risk and toxicity in composites commercial with halogen and toxic, it has been prohibited. Despite the common commercialization news researches has been developing to substitute this flame retardant, together accompany the new position of law. This work wanted to study an alternative of additive free halogen flame retardant, with polymer matrix the ABS copolymer, combinations the additive: organoclay Cloisite 20A, organoclay Cloisite Na+ treated with quaternary phosphonium salt, ammonium polyphosphate, melamine, micrometric and nanometric particles of aluminum hydroxide, titanium dioxide and silica forming that a composite. To characterization was doing thermal test of TGA and DSC, mechanical test of tensile and impact Izod strength, morphologia available through of MEV and MEV-FEG, X-ray diffraction analysis(XRD), infrared spectroscopy with attenuated total reflectance accessory (FTIR-ATR), flame retardant test based the ASTM D635-10 norm and UL 94 norm. Although the result was possible to observe effects about the addition the additive to obtain the ABS composite with inert flame retardant additives, that achieved V-0 and V-2 on the Ul 94, with reduction of linear burning rate between 18% to 80% from ASTM D635.

This study addresses the structure and the bonding in the family of tetrahedral boranes. The specific molecules studied are the series B4X4 (X=H, F, Br, Cl, I), the series B4BrCl3, B4Br2Cl2, and B4Br3Cl and tetra-tert-butyl-tetraborane, t-Bu4B4. The research presented herein employs the Hartree-Fock Self Consistent Field (HFSCF), the Moller-Plesset second-order perturbation theory (MP2), and the Density Function Theory (DFT). A variety of basis sets was employed. Our calculations are the first theoretical studies of B4Br4, B4I4, B4BrCl3, B4Br2Cl2, and B4Br3Cl, and are also the first calculations for the D4h structures of any of these molecules, except for B4H4. These results were compared with experimental results, where such comparisons can be made. The most energetically stable structure for all the B4X4 and B4BrnClm molecules has symmetry Td.

Au cours de ces travaux de thèse, nous avons exploré de nouvelles applications des proazaphosphatranes et de leurs dérivés, en particulier leur confinement dans une cage moléculaire. Dans la première partie, une bibliographie présente la littérature concernant (i) la découverte et les applications de proazaphosphatranes, (ii) les catalyseurs confinés dans des cages covalentes et (iii) la liaison halogène - une interaction non covalente émergente-. Par la suite, l’utilisation de proazaphosphatranes comme organocatalyseur très efficace pour la réaction de Strecker est décrit. Ensuite, un système FLP (paire de Lewis frustrée) comprenant un proazaphosphatrane encagé comme base de Lewis et du TiCl4 comme acide de Lewis a été utilisé pour catalyser la réaction de MBH (Morita-Baylis-Hillman). Finalement, un azaphosphatrane chloré a été synthétisé, et ses propriétés de reconnaissance vis à vis de différents anions halogénures, par liaison halogène, a été étudié. / In this dissertation, our goal is to explore new applications of proazaphosphatranes and their derivatives, especially in a confined space. In the first part, a comprehensive literature review regarding 1) discovery and application of proazaphosphatranes, 2) confined covalent cages based organo- and metal-catalysts, and 3) halogen bonding – an emergent noncovalent interaction has been demonstrated. Subsequently, proazaphosphatrane as highly efficient organocatalyst for the Strecker reaction is discussed. And a FLP (frustrated Lewis pair) system comprising an encaged proazaphosphatrane as Lewis base and TiCl4 as Lewis acid for MBH (Morita–Baylis–Hillman) reaction is reported. In the end, chlorinated azaphosphatrane is synthesized and studied in the recognition of different halide anions by halogen bonding, exhibiting a preferable affinity for chloride over bromide and iodide.

This dissertation is mainly focused on charge assisted noncovalent interactions specially hydrogen and halogen bonds. Generally, noncovalent interactions are only weak forces of interaction but an introduction of suitable charge on binding units increases the strength of the noncovalent bonds by a several orders of magnitude. These charge assisted noncovalent interactions have wide ranges of applications from crystal engineering to drug design. Not only that, nature accomplishes a number of important tasks using these interactions. Although, a good number of theoretical and experimental studies have already been done in this field, some fundamental properties of charge assisted hydrogen and halogen bonds still lack molecular level understanding and their electronic properties are yet to be explored. Better understanding of the electronic properties of these bonds will have applications on the rational design of drugs, noble functional materials, catalysts and so on. In most of this dissertation, comparative studies have been made between charge and neutral noncovalent interactions by quantum mechanical calculations. The comparisons are primarily focused on energetics and the electronic properties. In most of the cases, comparative studies are also made between hydrogen and halogen bonds which contradict the long time notion that the H-bond is the strongest noncovalent interactions.Besides that, this dissertation also explores the long range behavior and directional properties of various neutral and charge assisted noncovalent bonds.

Diquinoline molecules have been shown previously to have interesting inclusion properties. Of the nine new, targeted molecules produced for this work, seven formed inclusion compounds, and their solid-state structures are discussed herein. Chapter 2 shows the effect that substituting a hydrogen atom with a chlorine atom has on the inclusion properties. This comes about because of the additional intermolecular attractions that are now possible, and a wider range of guest molecules is included as a result. A new homochiral aromatic 'swivel offset face-face (OFF)' interaction is observed. Chapters 3 and 4 deal with the effect of adding extra aromatic planes to the target molecules, two or four planes, respectively. Each of these host molecules formed dimeric host-host units that are extremely similar across all crystal structures. These dimers mainly employed aromatic edgeface (EF) interactions. Chapter 5 looks at the effect of combining the modifications described in Chapters 2-4, namely additional aromatic surfaces and atom substitution. The resulting host molecule specifically includes polyhalomethane guests. In addition, this host molecule formed two concomitant pseudo-dimorph compounds with chloroform-d. The diquinoline host molecule presented in Chapter 6 incorporated an isomeric central linker ring to the other compounds. Although only a single crystal structure could be obtained, 1H NMR spectroscopy experiments show other small aromatics may be included. The effect of electron donating chemical substituents was examined in Chapter 7. These compounds were found to be quite insoluble, and did not produce crystals suitable for X-ray analysis. The host molecules in Chapter 8 contain electron withdrawing nitro groups. The two isomeric compounds that act as inclusion hosts show quite different properties. One of these hosts forms a series of inclusion compounds with water, in which the site occupancy of the guest can range from 0-100% without change to the overall structure. All the X-ray structures described have been analysed in crystal engineering terms, and their supramolecular interactions described in detail.

La famille des composés halogènes et inter-halogènes représentent des solides moléculaires adoptant des phases denses communes avec des solides moléculaires diatomiques comme l’azote et l’hydrogène. Parmi les transformations structurales et électroniques induites sous haute pression et observées dans ces solides, on note, entre autres, la dissociation moléculaire et la métallisation. De plus, l’étude des phases denses de l’iode a permis récemment l’observation d’une structure cristalline possédant une modulation dite incommensurable, c’est-à-dire une modulation possédant une périodicité différente de celle de la structure cristalline, jetant ainsi une lumière nouvelle sur le processus de dissociation moléculaire dans les solides halogènes. Dans ce mémoire, on propose d’étudier les changements structuraux dans monobromure d’iode (IBr), un composé inter-halogène possédant des propriétés structurales semblables à celles de deux composés halogènes, soit l’iode (I2) et le brome (Br2) sous leur forme solide. Des expériences de diffraction des rayons X de poudres en utilisant un rayonnement synchrotron ont été réalisées à température ambiante sur l’IBr en variant la pression jusqu’aux environs de 60 GPa. La nature chimique particulière du composé IBr a nécessité la mise au point de techniques de chargement d’échantillon destinées à préserver l’intégrité chimique de la substance utilisée. On rapporte également l’observation d’une phase de l’IBr présentant une modulation incommensurable. Les phases observées dans l’IBr permettent d’établir des parallèles avec les phases denses rapportées dans I2 et Br2 par le biais d’un modèle phénoménologique décrivant la séquence structurale des solides halogènes sous forme condensée.

Studies were performed to characterize the physical nature of the air-ice interface, and to clarify its role in processes that occur there. A glancing-angle Raman probe was developed to monitor hydrogen bonding at atmospheric interfaces; we saw enhanced hydrogen-bonding on ice compared to on water. Using glancing-angle laser-induced fluorescence (LIF), we determined that small acids and bases dissociated to similar extents at air-water and air-ice interfaces, but aromatic compounds were less well solvated at air-ice interfaces, resulting in self-association even at low surface coverages. We measured uptake kinetics of organic compounds using LIF and Raman spectroscopy. The uptake kinetics can be adequately fit by a single-exponential growth equation, but in order to properly describe the self-association of aromatics observed at the air-ice interface, equations accounting for self-association should be incorporated into the uptake model. A simple model was developed for naphthalene which included terms for self-association; good fits to the observed growth of intensity from monomeric and self-associated naphthalene were obtained. Direct photolysis of aromatics was faster at air-ice interfaces than in bulk ice or aqueous solution. While red shifts in the absorption spectra of benzene and naphthalene at air-ice interfaces could explain their enhanced reactivity there, the enhanced anthracene photolysis kinetics on ice are likely due to enhanced absorption cross sections or photolysis quantum yields, or to a different photolysis mechanism there. Oxidation rates of aromatics by photo-formed hydroxyl radicals are suppressed at air-ice interfaces, but not in bulk ice. Similarly, gas-phase OH reacts rapidly with aromatics at air-water interfaces, but no reaction is observed at air-ice interfaces. Conversely, the reactivity of ozone toward phenanthrene is enhanced there. This is not due to temperature effects or to enhanced partitioning of ozone to ice. Ozonation of bromide is also more rapid at air-ice interfaces than at air-water interfaces at environmentally relevant bromide concentrations. This enhancement could be due to exclusion of bromide to the air-ice interface during freezing. The rapid reactions of ozone with bromide and phenanthrene at air-ice interfaces suggest that both reactions could be atmospherically important.

Halogen bonding (XB), the interaction between electron deficient halogen compounds and electron donors, is an established non-covalent interaction in the solid and gaseous phases. Understanding of XB in the solution phase is limited. This thesis describes experimental studies of XB interactions in solution, and the application of XB interactions in anion recognition. Chapter 1 is a brief review of current understanding of XB interaction: theoretical models, studies of XB in solid and gaseous phases and examples in biological systems are discussed. At the end of this chapter, halogen bonding in the solution phase is discussed, along with applications of halogen bonding in organic syntheses. In chapter 2, linear free energy relationships involving the thermodynamics of halogen bonding of substituted iodoaromatics are studied. The utility of substituent constants and calculated molecular electrostatic potential values as metrics of halogen bond donor ability are discussed. Density Functional Theory (DFT) calculations are shown to have useful predictive values for trends in halogen bond strength for a range of donor-acceptor pairs. Chapter 3 describes the development of new multidentate anion receptors based on halogen bonding. Bidentate and tridentate receptors were found to exhibit significantly higher binding constants than simple monodentate donors. These receptors show selectivity for halide anions over oxyanions. Using 19F NMR spectra at different temperature, the enthalpies and entropies of anion bindings for monodentate and tridentate receptors were determined. The results indicate a positive entropy contribution to anion binding for both mono and tridentate receptors in acetone solvent. Finally in chapter 4, some mesitylene based receptors with 3-halopyridinium and 2-iodobenzimidazolium donors are introduced. The receptors perform halide anion recognition in aqueous solvent system through charge-assisted XB interactions. These findings can allude to utility in organic synthesis, supramolecular chemistry and drug design.