Orientadores: Flavio Antonio Maës dos Santos, Eduardo Martins Venticinque / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-19T01:52:02Z (GMT). No. of bitstreams: 1 Darrigo_MariaRosa_D.pdf: 5014349 bytes, checksum: 9fef435defe7d2163dc69966675ab445 (MD5) Previous issue date: 2011 / Resumo: Exploração de madeira realizada sob manejo de impacto reduzido tem sido considerada uma forma de auxiliar a refrear o desmatamento na Amazônia. No entanto, poucos dados estão disponíveis para verificar o impacto dessa atividade sobre a floresta, e assim, avaliar o potencial das áreas sob manejo para conservação de habitats. Nessa tese investigamos o impacto da exploração seletiva de madeira na regeneração e dinâmica de cinco espécies comerciais (Goupia glabra, Manilkara huberi, Manilkara bidentata, Minquartia guianensis e Zygia racemosa) e duas não exploradas (Pouteria anomala e Protium hebetatum). Instalamos parcelas permanentes em áreas sem exploração e em talhões com diferentes idades de regeneração após a exploração (2, 5 e 12 anos). Verificamos ocorrência de efeitos da exploração de madeira sobre fatores abióticos, e a relação desses com a regeneração de indivíduos pequenos (10 a 100cm de altura, Capítulo I). Através de modelos e simulações, avaliamos a sustentabilidade dos parâmetros (como ciclo de corte e intensidade de extração) atualmente utilizados nos principais planos de manejo propostos para a Amazônia (Capítulo II). Por fim, avaliamos se variações nas condições luminosas, encontradas nas áreas exploradas, podem alterar a interação herbívoro-planta, resultando em efeitos sobre a mortalidade de jovens (Capítulo III). Nossos resultados apontam para maior luminosidade e fertilidade do solo nas áreas exploradas. Em função do aumento da luz, verificamos também aumento no crescimento, mas que deve persistir apenas até aproximadamente 5 anos após a exploração. Já o aumento da fertilidade do solo encontrado nas áreas exploradas não contribuiu para aumento do crescimento. As taxas de mortalidade foram maiores nas áreas exploradas, mesmo em locais com 12 anos de regeneração. Tais variações nas taxas vitais foram verificadas para espécies comerciais e não comerciais indicando que as alterações ambientais proporcionadas pela exploração afetam também a regeneração das espécies sem valor madeireiro. Encontramos maiores taxas de herbivoria e crescimento nas clareiras e nas áreas exploradas, em função da maior luminosidade. No entanto, enquanto nas áreas controle a herbivoria foi maior nas clareiras que no sub-bosque, respondendo, então, a um aumento de luminosidade, nas áreas exploradas não ocorreu diferença, indicando que as taxas de herbivoria são independentes da intensidade luminosa. A herbivoria foi um fator importante como condicionante da mortalidade dos jovens, mas aparentemente essa interação está influenciando a mortalidade de maneira análoga entre áreas exploradas e controle. Portanto, essa interação não deve ser responsável pela maior mortalidade de jovens encontrada nas áreas exploradas (Capítulo I). As taxas assintóticas de crescimento (ls) encontrados nas áreas controle indicam estabilidade ou crescimento populacional, dependendo da espécie. Já nas áreas exploradas encontramos ls que indicam declínio das populações, com exceção de P. hebetatum, espécie não explorada. Deste modo, concluímos que a exploração de madeira não é sustentável, mesmo considerando as melhores técnicas de extração praticadas no Brasil. Aparentemente, a mortalidade de jovens (verificada no Capítulo I) e a intensidade de corte são fatores determinantes das taxas de crescimento populacional encontradas nas áreas exploradas / Abstract: Reduced-impact logging systems have been considered one way to diminish deforestation rate in Amazonia. However, we do not have enough knowledge about the effects of such systems, due to a lack of data about regeneration and dynamics of tree species. In this thesis we investigated the impact of selective logging on regeneration and dynamics of five commercial species (Goupia glabra, Manilkara huberi, Manilkara bidentata, Minquartia guianensis and Zygia racemosa) and two non-exploited species (Pouteria anomala and Protium hebetatum). We investigated effects of selective logging on the abiotic factors as well as in the regeneration of small individuals (10 to 100cm tall, Chapter I). Through models and simulations, we verified the sustainability of the parameters currently used in the major management plans, proposed for logging activities in Amazon (Chapter II). Finally, we assessed whether variations in light conditions found in the exploited areas could change herbivore-plant interactions, resulting in effects on the mortality of small individuals and their regeneration. Our results pointed to higher light and soil fertility in the exploited areas. We also found an increment in growth rate, due to canopy opening, which should last five years after exploitation. The higher soil fertility found in the exploited areas did not increase the growth rate. The mortality rate was higher in the exploited areas, even in those after 12 year regeneration period. The variation in the vital rates was verified in both exploited and non exploited species, which indicates that logging environmental alteration might also affect the regeneration of noncommercial species. We found higher herbivory and growth rates in gaps and in exploited areas, due to higher light intensity. However, in the control areas the herbivory was higher in the gaps than in the understory, thus responding to the increase in light conditions. In the exploited areas, the herbivore rate was the same in gaps and understory. Herbivory was an important factor conditioning the mortality of small individuals, but this interaction has equally influenced mortality in exploited and non-exploited areas. Therefore, this interaction should not be considered a cause of higher small individuals mortality rates found in the exploited areas. Population growth rates indicate stability or population growth of the tree species in the control areas, but in the exploited ones we found a shrinking population (exception to P. hebetatum, non-exploited species). We concluded that the reduced impact selective logging is not sufficient to warrant sustainability. Higher mortality of small individuals and logging intensity seems to be an important factor that contributes to the lower population growth rates verified in the exploited areas / Doutorado / Ecologia / Doutor em Ecologia

This diploma's thesis deals with critically endangered species Dianthus arenarius subsp. bohemicus from family Caryophyllaceae. Its distribution range is now limited on its last natural locality in National natural monument Kleneč. As a result of the change in land use (especially the abandonment of grazing), there was a significant reduction in its population size at the end of the 20th century and it was close to extinction. That is why action plan for species conservation was approved, which included number of management interventions at the locality. The most important was the removal of the upper humus horizon, which aims to create free gaps in the sand that allow the emergence and growth of new plants of D. arenarius subsp. bohemicus. The study species is also attacked by herbivores and it was predicted that increasing population might be endangered with increased herbivore population. The aim of this thesis is therefore to describe the population dynamics of the species, to evaluate the effect of the management and to determine how the herbivory affects the population dynamics of the species. The population growth rate decreases over time with vegetation succession. Even eight years after removal the population is still growing. The population growth rate is most affected by change in...

Green sea turtles in Bermuda are overgrazing the seagrasses on which later life stages are thought to specialize. I hypothesized that larger green turtles in Bermuda would display individual diet specializations during seagrass scarcity. Stable isotope methods were used to determine the diet composition of green sea turtles from the Bermuda Platform as a function of size class and in turtles captured in successive years. Individual turtles had a wide range of diets, however, the variation in diets was driven by differences among size class rather than within the size classes of larger turtles, indicating that green turtles undergo a dietary ontogenetic shift during their residency on the Bermuda Platform and no clear specialization of diets among late-stage individuals. The apparent lack of dietary specialization of larger turtles indicates that older turtles are not diversifying their diets in response to the drastic reductions in seagrass in Bermuda.

The study evaluated the effects of herbivory pressure, nutrient availability and potential propagule supply on recruitment and succession of coral reef macroalgal communities. Recruitment and succession tiles were placed in a nutrient-herbivory factorial experiment and macroalgal abundances were evaluated through time. Proportional abundances of macroalgal form-functional groups on recruitment and succession tiles were similar to field established communities within treatments, evidencing possible effects of adult macroalgae as propagule supply. Macroalgal abundance of recruitment tiles increased with nutrient loading and herbivory reduction combined whereas on succession tiles nutrient loading increased abundance of articulated-calcareous only when herbivores were excluded. Macroalgal field established communities were only affected by herbivory reduction.

Coral reefs are one of the world’s most diverse yet heavily impacted marine ecosystems. As a result of many direct and indirect stressors, coral reefs have experienced major degradation over the last several decades. Declines in coral reefs in the Caribbean have been particularly acute and generally associated with the loss of key herbivores and an increase in algae. Herbivorous fishes such as parrotfishes can positively impact coral reefs by removing algae that compete with corals for light and space. However, many parrotfishes are also important coral predators. Predation on corals, known as corallivory, can adversely affect coral growth, reproduction and survivorship. In this time of changing environments and coral reef decline, understanding the context-dependent nature of parrotfish foraging behavior is of critical importance to scientists and managers. Knowledge of the responses of parrotfishes across a range of resource abundance will help scientists and managers better predict the impacts that these herbivores have on benthic communities as both herbivores and corallivores. In Chapter 1, we examined how six different species of coral reef herbivores (i.e. parrotfishes), all of which belong to a single feeding guild but represent a range of dietary specialization, respond to changes in the abundance of preferred food items. We conducted behavioral observations of parrotfishes in two regions of the Greater Caribbean, and compared consumption rates, diet preferences, and foraging territory size in relation to natural variation across sites in preferred resource abundance. We found that the more-specialized parrotfishes increased their dietary specialization, had smaller foraging territories, and increased their feeding rate with increased preferred resource abundance. In contrast, less-specialized species exhibited constant foraging traits regardless of the abundance of their preferred resources. This study suggests that differences in dietary preference, specialization, and subsequent nutritional demand may drive a differential response in foraging behavior by generalists and specialist herbivores to changes in resource abundance. Recognizing that generalists and specialists differ in the degree to which their foraging behaviors are context-dependent can allow researchers to better predict how herbivores shape the structure and function of marine and terrestrial ecosystems. In Chapter 2, we determined if and how corallivory rates and intensity by parrotfishes differ between two regions of the Greater Caribbean that vary in coral and parrotfish community composition and abundance. We found that more species of parrotfishes than previous studies suggest contribute to corallivory. However, corallivory rates and selectivity for coral species by parrotfishes were largely context-dependent, particularly with regards to the relative abundance of preferred corals and diversity of corallivores at a given site. Although we found that corallivory rates decrease with coral cover, it appears that areas of low coral cover may have high corallivory intensity and coral tissue loss, in part due to the relatively high abundance of corallivores in these areas. The impact of high corallivory intensity and tissue loss requires further knowledge regarding the fate of bite scars on corals.This information will help predict the positive and negative consequences of parrotfishes on coral persistence in the Caribbean. Evidence provided in this thesis furthers our understanding of the dual role of parrotfishes as herbivores and corallivores. Additionally, it reveals the implications of changing coral reef habitats on parrotfish behavior and subsequent coral reef health and resilience.

Ecological differences between herbs and woody plants, and evolution of the herbaceous habit Adam Klimeš, doctoral thesis Abstract Flowering plants (angiosperms), which make up most present-day vegetation, were originally woody. While flowering plants have repeatedly given rise to herbaceous lineages since their first appearance, we lack a clear explanation for these common evolutionary events. Freezing temperatures and drought periods have been proposed as factors which had caused huge success of the younger growth form but the evidence is very limited and not in favour of these hypotheses. In this thesis, we aimed to build the foundations of research on the evolution of herbs. We outlined new potential drivers of the evolution of herbs, suggested solutions to some methodological challenges and provided evidence about differences between herbs and woody plants relevant to the hypotheses on herb evolution. To this end, we used common garden experiments with young plants of both growth forms and global trait data from public databases which we evaluated using phylogenetic comparative techniques. Annuality of aboveground biomass and fast life-strategy of herbs are characteristics which differentiate them from woody plants and which in some conditions are expected to be behind their success. Apart from the...

Quaking aspen (Populus tremuloides) clones within close proximity to one another can exhibit drastically different levels of browsing by ungulates. The objectives of this study were to (1) determine interclonal differences in plant chemistry between adjacent clones exhibiting different degrees of herbivory which may influence the browsing behavior and patterns of ungulates, and (2) determine if correlation exists in the levels of salicortin and tremulacin between current year's suckers and current year's growth on older trees. This second objective was meant to indicate a protocol for land managers for identifying clones meriting increased protection from herbivory after treatment and wildfire. In July of 2005, 6 pairs of clones were identified on the Dixie National Forest, Utah, and on Cedar Mountain, east of Cedar City, Utah. Pairs consisted of 2 clones within the same pasture and/or grazing allotment and within a minimal distance from one another; one clone displaying moderate to high levels of ungulate utilization of aspen suckers, and one exhibiting minimal to no ungulate utilization of aspen suckers. Soil samples were taken at each clone and leaf tissues were sampled to determine genet. Aspen suckers were sampled for nutrient content, combined phenolic glycoside concentration (salicortin and tremulacin), condensed tannins, and the presence of extra floral nectaries (EFNs), at intervals throughout the growing season (August 3-6, August 31-September 2, and October 12-14). Current year's growth from representative mature trees was sampled for phenolic glycoside concentration at these times as well. All tests demonstrated high levels of insignificance for both leaves and stems.Sucker nitrogen values may have been elevated during portions of the sampling year in clones displaying moderate to high levels of ungulate utilization, possibility indicating an ungulate preference for nitrogen, but due to missing values, this is far from conclusive. P-values for forest floor factors were also highly non-significant with the exception of forest floor C (0.04) in the regenerating clones. Two post-project hypotheses are postulated in an attempt to explain the differences of forest floor carbon in terms of factors that may be influencing ungulate herbivory.

Les forêts dunaires d’Aquitaine de pin maritime (Pinus pinaster) représentent un intérêt économique et écologique important de par leur rôle multifonctionnel (production de bois,protection contre l’érosion, préservation de la biodiversité, tourisme). La régénération naturelle est pratiquée après coupe rase pour les renouveler. Mais, de nombreux échecs de régénération sont observés depuis 20 ans, entrainant des pertes économiques non négligeables.L’objectif de ce travail a été d’identifier les mécanismes écologiques impliqués dans ces échecs récurrents, afin de proposer des recommandations de gestion pour favoriser le renouvellement de ces pinèdes. Pour cela, nous avons étudié quatre étapes-clés du processus de régénération : dispersion des graines, germination, survie, et croissance. Un réseau de sites d’observation le long du cordon dunaire a été utilisé pour quantifier la régénération, en interactions avec des pratiques sylvicoles (coupe rase vs coupe progressive, semis de graines de pin maritime vs absence de semis). Deux sites semi-expérimentaux ont été installé afin d’étudier en détail certains facteurs explicatifs potentiellement importants dans notre contexte(climat, interactions plante-plante, herbivorie). Nos résultats confirment que la régénération naturelle est un processus complexe, influencé par de nombreux facteurs environnementaux et d’autres liés à la gestion, pouvant être eux mêmes en interaction. La quantité de graines atteignant le sol ne semble pas être limitante. La germination des graines est fortement liée à l’humidité du sol, et est influencée par l’hétérogénéité de la microtopographie. La sécheresse estivale, cause majeure de mortalité des plantules, peut-être modulée par le maintien d’arbres semenciers. Les interactions biotiques directes et indirectes avec la végétation de sous-bois impactent fortement la survie des plantules, mais varient grandement en direction et en intensité selon les saisons et les années.Bien que nos résultats permettent de mieux comprendre les mécanismes impliqués dans le cycle de régénération du pin maritime, il apparaît difficile de mettre en avant un seul facteur expliquant les échecs de régénération sur certains secteurs. Cependant, dans l’ensemble, le maintien d’arbres semenciers pendant quelques années permet d’obtenir une régénération réussie sur la globalité des forêts dunaires, grâce à l’apport pluriannuel de graines mais aussi à travers les modifications du microclimat sous leur canopée. Contrôler la végétation spontanée afin de réduire la compétition avec les plantules de pin, et augmenter les plans de chasse afin de réduire la pression des herbivores sur les plantules, doit aussi être envisagé dans les secteurs où les échecs de régénération sont fréquents. / In south-western France, the coastal fringe with maritime pine (Pinus pinaster) forest has a multifunctional role, with erosion protection, preservation of biodiversity, tourism, and wood production as main objectives. Natural regeneration is used to renew these stands after clear-cutting. However, in recent years, regeneration failures have increased in some areas,leading to significant economic losses.The objective of this work was to identify the ecological mechanisms involved in these recurrent failures, in order to propose adapted forestry management practices to ensure forest regeneration. To do this, we studied four stages of the regeneration process: seed dispersal, germination, survival, and growth. A monitoring network of five sites along the Aquitaine Coast was also used to quantify the regeneration and characterize local differences in terms of forest management practices (clear-cut vs seed-tree regeneration,and sowing vs no sowing). Two experimental sites were set up to study in detail some factors potentially important in our context (climate, plant-plant interactions, herbivory).Our results confirm that natural regeneration is a complex process, influenced by many –often interacting – environmental and management factors. The quantity of seeds reaching the forest soil does not seem to be limiting. Seed germination is strongly related to soil moisture, and is influenced by the heterogeneity of the micro topography. Summer drought, the main cause of seedling mortality, may be mitigated by remaining seed trees on the stand.Direct and indirect biotic interactions with understorey vegetation have a strong impact on seedling survival, but vary greatly both in direction and intensity, depending on the seasonand the year.Even though our results provide a better understanding of the mechanisms involved in there generation cycle of maritime pine, it is difficult to put forward a single factor explaining local regeneration failures. However, overall, maintaining seed trees for a few years allows obtaining a successful regeneration in the entire coastal forest, thanks to the multi-yearsupply of seeds but also through the modifications of the microclimate under their canopy. Controlling understorey vegetation to reduce competition with pine seedlings and increasing hunting plans to reduce herbivory pressure on seedlings should also be considered in areas where regeneration failures are common.

The origin and classification of open and mosaic ecosystems, particularly in the tropics and subtropics, have led to controversy worldwide. This has affected biodiversity conservation and, in some cases, promoted the establishment of afforestation projects based on the assumption that open and mosaic ecosystems are degraded forests. Although this initiative can have benefits in terms of carbon storage and climate mitigation if carefully planned and managed, it can also cause biodiversity loss and degradation when afforestation takes place in areas that were previously open ecosystems, or where unsuitable species are used. Madagascar, a world biodiversity hotspot, is one of the countries targeted for the implementation of afforestation projects. The Central Highlands of Madagascar, dominated by grassland matrix with forest patches, is the main region targeted. The nature and origin of the landscape are hotly debated, however, and it is not clear whether these open ecosystems are ancient or anthropogenically derived. Understanding of landscape history is therefore required to identify and conserve ancient open ecosystems, and to distinguish them from areas that have been deforested by people. This research aims to reconstruct the vegetation history and environmental change in the Central Highlands of Madagascar during the Holocene using palaeoecological methods, in order to inform appropriate conservation and management plans. We provide new records of vegetation, hydrological change, fire and herbivory activities by using a multiproxy approach, which includes fossil pollen, stable carbon isotopes, diatoms, charcoal and coprophilous spores, that allows for a comprehensive investigation into the history and drivers of vegetation change. Sediment cores were collected from two sites, Tampoketsa-Ankazobe wetland and Lake Dangovavy, located in the eastern and western slopes of the highlands, respectively. Results indicated that the surrounding area of both sites was composed of mosaic ecosystems, comprising of forest patches of variable extent in a matrix of open grassland and ericoid shrubland vegetation, at least from the Early and Mid-Holocene to ca. 1000 cal years BP, driven mainly by climate variability and fire occurrence. In Tampoketsa-Ankazobe wetland (eastern slopes), the vegetation was characterised by a mosaic of ericoid shrubland and mid-elevation forest taxa, between ca. 11 200 and 8300 cal years BP, under warm/wet period and low fire occurrence. The vegetation in the area changed to a mosaic of ericoid shrubland with more dominance of high-elevation forest from ca. 8300 to 1000 cal years BP under a drier climate and consistent low fire occurrence. The abundance of shrubs and trees during those two periods were confirmed by the dominance of C3 plants as reflected by the stable carbon isotopes results, and coincided with low herbivory activities in the TampoketsaAnkazobe site from ca. 11 200 to 1000 cal years BP. In parallel, the pollen record from Lake Dangovavy (western slopes), between ca. 6200 and 5400 cal years BP, suggests a mosaic ecosystem, dominated by more C3 montane grass, ericoid shrubland and high elevation forest patches promoted by cool/dry climate with low fire occurrence and herbivory activities. Between ca. 5400 and 4200 cal years BP, vegetation in the area was dominated by a mosaic of ericoid shrubland and mid-elevation forest under a wetter period, moderate fire occurrence, and herbivory activities. This mosaic was controlled by climate, fire refugia and herbivory feedbacks. The vegetation changed into a forest-savanna mosaic with an abundance of grassland and pioneer/fire-resistant trees between ca. 4200 and 3000 cal years BP. The period was characterised by an initial increase of local fire followed by a regional drought event. This suggests that a threshold might have been reached, with a resulting shift in vegetation composition. Between ca. 3000 and 1000 cal years BP, reoccurrence of ericoid shrubland with woodland savanna taxa was recorded in the area. The vegetation was conditioned by variation of climate from wet (until ca. 2000 cal years BP) to dry period (ca. 2000–⁠1000 cal years BP) with moderate fire occurrence and herbivory activities. In addition, stable carbon isotope results show that between ca. 6200 to 1000 cal years BP, the site was characterised by C3 plants. During the last ca.1000 cal years BP, pollen records from both sites in the Central Highlands of Madagascar showed a shift to a more open landscape dominated by grassland. Trees and shrubland in the highlands experienced a massive decrease and this correlated with an abundance of C4 plants associated with reduced diversity. The shift of vegetation during this period was likely a result of a centennial severe drought period at ca. 950 cal years BP, as recorded in the literature and confirmed by the peak in aerophilous taxa in our diatom record. The drought was followed by a dramatic increase of fire occurrence and herbivory activities in the region, as recorded in the charcoal and spore records from both sites, indicating human activities at ca. 700 and 500 cal years BP for Lake Dangovavy and Tampoketsa-Ankazobe wetland, respectively. Though the vegetation at both sites in Central Highlands of Madagascar was very dynamic until ca. 1000 cal years BP, complex interactions between climate and fire allowed the forest and ericoid elements to persist, consistent with a heterogeneous mosaic landscape. This changed from 1000 years ago with the occurrence of a regional severe drought event followed by an increase in human activities leading to an increase of grass, a decline in forest and ericoid elements. Our findings suggest that although, the eastern and western slopes in Madagascar might have different vegetation histories over time as a response to the complex climatic-fire drivers at least until ca. 1000 cal years BP, they both: a) Contained ancient open ecosystems such as grasslands and/or ericoid shrubland, and a mosaic landscape which should be considered typical of the highland region. b) Experienced a loss of forest, woodland and mosaic elements, a trend that is consistent with the anthropogenic conversion of some forests to grasslands since ca. 1000 cal years BP. Such findings have implications in terms of conservation, fire management and afforestation projects in the Central Highlands, and provide additional knowledge that contributes to the understanding of its ecological processes and history prior to human arrival on the island. Indeed: 1) Ancient grasslands and ericoid shrubland need to be identified and conserved because of their antiquity and unique biodiversity. To date, there has been some focus on ancient grasslands, but the presence of ancient heathlands has not been discussed. 2) It is important to distinguish ancient from derived grasslands and to target the latter for reforestation, using species that are typical of the remaining forest patches. 3) Fire management should be conducted at a local scale and should incorporate the landscape fire history, considering, for example, the differences between two slopes in the Central Highlands.

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