The primary aim of this work was to estimate whether tree rings of Norway spruce (Picea abies L.) can be used as a geochemical archive for the purposes of historical and recent pollution of atmosphere by Mercury (Hg). The research was realized during the year of 2013 (January to June) in the the capital city of Prague. Šumava National Park was selected as a reference site. In total, forty eight cores of Norway spruce were sourced from five locations for the Hg analysis. Three cores were obtained from each tree from the following cardinal points: the north, east and south-west. The investigated sites have been significantly different in amount of Hg measured (ANOVA, p < 0,001). There was found also negative correlation among the amount of Hg and phosphorus (P) (r = - 0,66; p < 0,002). The highest concentrations of Hg were measured at "Krematorium Motol" site (up to 14,2 ng.g-1 ). On the contrary, the lowest concentration of Hg was recorded both near the former incineration plant at the site "Pod Spalovnou - Vysočany" (1,1 ng.g-1 ) and at the reference site in the Šumava (1,2 ng.g-1 ). Increased values of Hg in the investigated tree rings in the 50's up to the late 70's of the 20th century is probably caused by the former industrial era connected with coal-fired power plants and ore processing. The...

This thesis looks into the use of historical macrophyte records to assess long term changes in macrophyte communities in lakes and potential reasons for these changes. In particular it uses historical records to assess changes in macrophyte communities in the Norfolk Broads and West Midland Meres, two sets of lowland, eutrophic lakes in England. It provides a critical examination of the use of historical records, highlighting some of the constraints common to such data such as variations in recording effort, and bias in species recording and site selection. Having acknowledged these issues we then go on to develop a robust way to interpret such data, using a “change index” based on species persistence over the last 200 years within individual lakes. Species with high change index values, which represented species which had persisted or increased within the lake districts, were those known to be characteristic of eutrophic lakes. Conversely species with low index scores, which had declined in both the broads and meres over the last 200 years, included species associated with less fertile conditions but also a selection of typically eutrophic species. Averaging of change index scores in present day survey data served to identify the historically least changed lakes and to rank lakes in order of degree of botanical change over the last century. We then analysed the ecological basis of the change index in order to better understand the processes behind the decline of some species and survival of others in the Norfolk Broads and West Midland Meres. Functional groups determined from morphological and regenerative traits displayed significant differences in change index values in both groups of lakes, but declining taxa occurred across a wide range of plant growth forms. Non-hierarchical clustering of species based on their ecological preferences, obtained from published literature, resulted in groups with distinct change index values, indicating that changes in the status of species could be partly explained by these preferences. Of these, trophic preference was consistently the most important, with species of less fertile habitats consistently experiencing the greatest declines. However, some characteristically eutrophic species have also declined significantly, particularly in the broads. In these cases increasing loss of shallow water, low energy habitats in the broads, or loss of fluctuating water levels and less alkaline backwaters in the meres, appear to have been contributory factors. In addition to the change index approach, we also used historical records at a site level to complement palaeolimnological analysis and investigate the change in macrophyte community composition and structure at Barton Broad, Norfolk. Sediment samples were extracted from the bottom of the broad and analysed for sub-fossil remains and pollen of macrophytes. The historical records and palaeolimnological analysis combined showed that early communities did not consist entirely of low growing, oligotrophic and mesotrophic species as previously thought, but in fact comprised a mixture of these and other more characteristically high nutrient species associated with taller, or free-floating growth habit. As eutrophication progressed throughout the last century, the community was increasingly dominated by these latter growth forms. Diversity was maintained, however, since encroaching reedswamp generated a mosaic of low energy habitats which supported a range of species unable to withstand the hydraulic forces associated with more open water habitat. When the reedswamp disappeared in the 1950s, many of the dependent aquatic macrophytes also declined resulting in widespread macrophyte loss. The thesis demonstrates not just the complexities of using historical records, but also ways in which these can be overcome to make useful observations about macrophyte community change and lake ecological integrity to inform conservation and lake management, both on a site and lake district level.

<p>The aims of this thesis are to (1) analyze the predictability (indicators) of plant and fungal species diversity in old-growth forests, and (2) assess the history and biodiversity of woodland key habitats (WKHs) and their potential to maintain species diversity in fragmented boreal forest landscapes. </p><p>Predictability was explored in Granlandet nature reserve, an unexploited landscape composed of discrete old-growth Picea forest patches of varying size isolated by wetland, reflecting conditions of insular biota at stochastic equilibrium. Data from 46 patches (0.2-12 ha) showed that most species were rare. However, species richness and composition patterns exhibited a high degree of predictability, which strengthen the possibility to apply biodiversity indicators in old-growth forest stands. Area was a key factor. The increase in species richness starts to level out at 2-3 ha. Large patches host more Red-list species in their interiors than do small ones, i.e. stand size is an important qualitative aspect of old-growth habitat. Nestedness emerged in relation to area but also in equal-sized plots. Structural complexity and habitat quality were important for species richness and compositional patterns, and small habitats of high quality could harbor many rare species. Monitoring of wood-fungi on downed logs showed that species diversity on downed logs changed over periods of 5-10 years and that the occurrences of annual species were unpredictable. It is suggested that monitoring of species with durable fruit bodies (mainly polypores) is likely to be a feasible approach to obtain comparable data over time.</p><p>Assessments of biodiversity of WKHs were performed in two areas with contrasting histories of forest exploitation, namely in south boreal and north boreal Sweden. Analyses of the history of 15 south boreal WKHs showed that fire-suppression, selective logging until mid-20th century and abandonment by modern forestry has shaped their forest structure. These WKHs are not untouched forests, they lack key structural components and harbor few Red-list species. Artificial interventions to restore natural processes and patterns are needed to further increase their suitability for threatned species. Modeling analyses of species richness in 32 WKHs in north boreal Sweden, some of which have not been isolated by modern forestry until recently, indicated an excess of crustose lichen species, i.e. WKHs may face delayed species extinctions. By contrast, the results indicate that wood-fungi have tracked the environmental changes. Differences in substrate dynamics between epiphytes on living trees and species growing on decaying logs may explain the diffeence between species groups. The results indicate that population densities of Red-list species were low, which may result in further depletion of species diversity.</p><p>Continuing species declines and extinctions are likely if not conservation of WKHs are combined with other considerations in th managed forest landscape. Both WKHs and their surroundings must be managed and designed to maintain biodiversity over time. For a successful future conservation of boreal forest biodiversity monitoring of WKHs must be combined with monitoring of refeence areas. </p>

The aims of this thesis are to (1) analyze the predictability (indicators) of plant and fungal species diversity in old-growth forests, and (2) assess the history and biodiversity of woodland key habitats (WKHs) and their potential to maintain species diversity in fragmented boreal forest landscapes. Predictability was explored in Granlandet nature reserve, an unexploited landscape composed of discrete old-growth Picea forest patches of varying size isolated by wetland, reflecting conditions of insular biota at stochastic equilibrium. Data from 46 patches (0.2-12 ha) showed that most species were rare. However, species richness and composition patterns exhibited a high degree of predictability, which strengthen the possibility to apply biodiversity indicators in old-growth forest stands. Area was a key factor. The increase in species richness starts to level out at 2-3 ha. Large patches host more Red-list species in their interiors than do small ones, i.e. stand size is an important qualitative aspect of old-growth habitat. Nestedness emerged in relation to area but also in equal-sized plots. Structural complexity and habitat quality were important for species richness and compositional patterns, and small habitats of high quality could harbor many rare species. Monitoring of wood-fungi on downed logs showed that species diversity on downed logs changed over periods of 5-10 years and that the occurrences of annual species were unpredictable. It is suggested that monitoring of species with durable fruit bodies (mainly polypores) is likely to be a feasible approach to obtain comparable data over time. Assessments of biodiversity of WKHs were performed in two areas with contrasting histories of forest exploitation, namely in south boreal and north boreal Sweden. Analyses of the history of 15 south boreal WKHs showed that fire-suppression, selective logging until mid-20th century and abandonment by modern forestry has shaped their forest structure. These WKHs are not untouched forests, they lack key structural components and harbor few Red-list species. Artificial interventions to restore natural processes and patterns are needed to further increase their suitability for threatned species. Modeling analyses of species richness in 32 WKHs in north boreal Sweden, some of which have not been isolated by modern forestry until recently, indicated an excess of crustose lichen species, i.e. WKHs may face delayed species extinctions. By contrast, the results indicate that wood-fungi have tracked the environmental changes. Differences in substrate dynamics between epiphytes on living trees and species growing on decaying logs may explain the diffeence between species groups. The results indicate that population densities of Red-list species were low, which may result in further depletion of species diversity. Continuing species declines and extinctions are likely if not conservation of WKHs are combined with other considerations in th managed forest landscape. Both WKHs and their surroundings must be managed and designed to maintain biodiversity over time. For a successful future conservation of boreal forest biodiversity monitoring of WKHs must be combined with monitoring of refeence areas.

Maps and models of seismic and tsunami risk are constructed from a variety of measurements taken in Indonesia, which have the potential to reduce loss of life and infrastructure. The first study uses the multichannel analysis of surface waves (MASW) method to calculate the time-averaged shear wave velocity to 30 m depth (Vs30). These measurements were taken at 58 sites in the city of Pacitan, Java and on the islands of Lombok, Ambon, and the Banda Islands. Vs30 calculations are compared with local geologic maps to extrapolate site class for locations not measured directly. Site class maps are then compared with Modified Mercalli Intensity (MMI) observations for three earthquake events that impacted Lombok and Ambon to identify regions where the MMI and Vs30 do and do not corroborate one another. Consistent with other Vs30 studies, the lowest values are observed on coastal alluvial plains and the highest values on steeper hillsides underlain by volcanic deposits. The second study focuses on a potential sector collapse of the volcano Banda Api within the Banda Islands. A field survey of its summit identified a steeply dipping normal fault striking NNE-SSW. This, along with the fissure geometry of the volcano's most recent eruption, reveals a failure plane along which a future sector collapse could occur. The numerical model Tsunami Squares (TS) predicts that the tsunami produced by this landslide would inundate an estimated 63% of buildings on the Banda Islands with waves as high as 82 m. These findings highlight the importance of installing a GPS receiver array on Banda Api to monitor the motion of its slopes. The third study analyzes sediment from trenches on the Banda Islands and Ambon to test if historical tsunamis that have impacted the area are preserved in the geological record. Potential tsunami deposits were identified by the presence of marine sand and larger clasts of marine carbonate in an environment which otherwise lacks large storms to bring such material onshore. Several dating methods constrain the ages of at least seven candidate tsunami deposits found in trenches onshore. One of these historical tsunamis (the event of November 26, 1852) is described in significant detail from several locations across the Banda Sea, which enables modeling of the event using a Bayesian statistical approach. The posterior of this model predicts the most likely epicenter was SW of Seram with a mean magnitude of Mw 8.8. It also makes other predictions about fault parameters. The region exhibits a marked slip deficit based on instrumental records of earthquakes in the area.