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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Effects of Various Molecules on the Structure and Dynamics of Lipid Membranes / Molecules in membranes: Where they are, what they do

Toppozini, Laura 11 1900 (has links)
In my time at the Laboratory of Membrane and Protein Dynamics at McMaster University, it has been our goal to investigate the fundamental properties of model membranes and how some common membrane molecules, namely water, ethanol, and cholesterol, interact with the bilayer. Our studies employ highly-oriented, solid-supported membranes in order to extract unambiguous structural information perpendicular to and in the plane of the membranes, with the exception of the hydrated powder samples used in probing the effects on ethanol. Both X-ray and neutron scattering were employed to investigate the structural properties of the membranes and neutron scattering was used to infer the dynamical properties. A variety of neutron scattering techniques were used to determine the properties of hydrated lipid bilayers, as described in the first two publications listed. Instruments including a neutron backscattering spectrometer, reflectometer, and time-of-flight spectrometer were used to observe bilayer structure, lipid/water coupling, and water diffusion. We found that hydrated, solid-supported single-bilayers showed no strong coupling between hydration water and lipid tails and the out-of-plane structure of stacked fluid bilayers as well as the anisotropic and anomalous behaviour of hydration water compared to bulk water. Both X-ray and neutron scattering experiments were done to determine the effect of a 2mol% concentration of ethanol on a hydrated lipid powder. X-ray scattering was used to determine the structural changes due to the addition of ethanol and the location of ethanol within the bilayer. This was accomplished by determining areas of increased electron density in the head group and among the acyl tails. The presence of ethanol also attributed to a decrease in lateral lipid diffusion constant in the gel phase, while no significant change was found in fluid bilayers. In the final study outlined in this thesis, the result of a 32.5% concentration of cholesterol in a hydrated, fluid phospholipid membrane is discussed. Coarse-grained molecular simulations and measurements of the lateral structure of the membrane via neutron spectrometry were able to determine the heterogeneous nature of the liquid-ordered phase and the structure of each of the domains in the membrane. The following thesis will introduce model membranes, their relevant components and the scattering of X-rays and neutrons from such matter. Next, experimental techniques, sample constituents, sample preparations, and instruments used in experiments will be described. Then, each study will be introduced and discussed which will showcase the progress made in the field of model membranes. Lastly, an overview of the studies will lead in to future directions for each model system in terms of suggested experiments and general path. / Thesis / Doctor of Philosophy (PhD)
2

Investigating the influence of water in lysozyme structure and dynamics using FT-IR and XRD

Yousif, Rafat January 2019 (has links)
Water is “the matrix of life” for its fascinating properties. The well-known simple water molecule consists of one oxygen atom and two hydrogen atoms, covering most of planet earth’ssurface. It is the most studied element in science; however, its properties are still not fully understood. Another essential building block of life is proteins, which manifest naturally in aqueous environments. The protein activity is controlled by the protein folding process that is dependent on the surrounding environment. It is hypothesized that the hydrogen bond network of water plays an important role in the folding process. Here, we investigate the protein lysozyme in liquid water as well as in the crystalline state ice Ih, exploring various temperatures, using FT-IR and XRD. Our main finding is that a transition occurs at approximately T=210 K, indicative of the hypothesised protein dynamic “glass” transitionobserved by previous studies in supercooled water at similar temperatures.
3

Toward Anti-icing and De-icing Surfaces : Effects of Surface Topography and Temperature

Heydari, Golrokh January 2016 (has links)
Icing severely affects society, especially in the Nordic countries. Iceaccumulation can result in critical performance problems and safetyconcerns for instance in road, air and sea transportation, transmissionlines, marine and offshore structures, wind turbines and heat exchangers.Present active ice-combating approaches possess environmental,efficiency and cost drawbacks. Thus, fabricating icephobic surfaces orcoatings impeding ice formation (anti-icing), but facilitating ice removal(de-icing) is desired. However, different conditions in the environmentduring ice formation and growth add to the complexity of the problem.An icephobic surface that works for a certain application might not be agood candidate for another. These surfaces and the challenges are infocus in this thesis.Wetting properties are important for ice formation on surfaces fromthe liquid phase (often supercooled water), where the water repellency ofthe surfaces could enhance their anti-icing effect. Considering this,different hydrophobic and superhydrophobic surfaces with differentchemistry, morphology and roughness scale were prepared. Since anyinduced wetting state hysteresis on hydrophobic surfaces could influencetheir performance, the wetting stability was investigated. In particulardynamic wetting studies of the hydrophobic surfaces revealed whatsurface characteristics benefit a stable wetting performance. Further, theeffect of temperature, particularly sub-zero temperatures, on the wettingstate of flat and nanostructured hydrophobic surfaces was investigated.This was complemented with studies of the wetting stability of sessilewater droplets on flat to micro- and multi-scale (micro-nano) roughhydrophobic samples in a freeze-thaw cycle. To be consistent with mostapplications, all temperature-controlled experiments were performed inan environmental condition facilitating frost formation. Further, antiicingproperties of hydrophobic surfaces with different topography butsimilar chemistry were studied by freezing delay measurements.A dynamic wetting study using hydrophobic samples with similarchemistry but different topography revealed that multi-scale roughnesscould benefit the wetting stability. However, when these surfaces areutilized at low temperatures the wetting hysteresis observed during acooling/heating cycle is significant. Such a temperature-inducedhysteresis is also significant on superhydrophobic surfaces. I attributethis to condensation followed by frost formation facilitating spreading of  the supercooled water droplet. The freezing delay measurementsdemonstrate no significant effect of surface topography on anti-icingproperties of hydrophobic surfaces, however the flat surfaces showed thelongest delay. These findings are in agreement with heterogeneous icenucleation theory, suggesting preferential ice nucleation in concave sites,provided they are wetted.In the second part of this thesis, I consider the findings from theprevious part illustrating the limitations of (super)hydrophobic surfaces.The de-icing properties of hydrophilic surfaces with a hydration waterlayer, hypothesized to lubricate the interface with ice, were studied. Heretemperature-controlled shear ice adhesion measurements, down to -25oC, were performed on an adsorbed layer of a polymer, either bottle-brushstructured poly(ethylene oxide) or linear poly(ethylene oxide). The iceadhesion strength was reduced significantly on the bottle-brushstructured polymer layer, specifically at temperatures above -15 oC,whereas less adhesion reduction was observed on the layer formed by thelinear polymer. These findings are consistent with differential scanningcalorimetry (DSC) data, demonstrating that the hydration water, boundto the bottle-brush structured polymer, is in the liquid state at thetemperatures where de-icing benefit is observed. Further, continuingwith the hypothesis of the advantage of surfaces with a natural lubricantlayer for de-icing targets, I studied shear ice adhesion on the molecularlyflat basal plane of hydrophilic mica down to -35 oC. Interestingly, ultralowice adhesion strength was measured on this surface. I relate this to theproposed distinct structure of the first ice-like but fluid water layer onmica, with no free OH groups, followed by more bulk liquid-like layers.This combined with the molecularly smooth nature of mica results in aperfect plane for ice sliding. / Isbildning har en stark inverkan på samhället, speciellt i de nordiskaländerna. Isuppbyggnad kan resultera i kritiska prestandaproblem ochsäkerhetsrisker inom t.ex. väg-, luft-, och sjötransport, kraftledningar,marina- och offshorestrukturer, vindkraftverk och värmeväxlare.Nuvarande aktiva isbekämpningsmetoder uppvisar brister i avseende påmiljö, effektivitet och kostnad. Det finns därmed ett behov av attframställa ytor eller ytbeläggningar som förhindrar isbildning (antiisning)eller underlättar borttagandet av redan bildad is (avisning). Dockkompliceras problemet av de många olika förhållanden under vilka is kanbildas. En beläggning som fungerar för en viss tillämpning behöver intenödvändigtvis vara en bra kandidat för en annan. Dessa ytor ochutmaningar relaterade till dem är i fokus i denna avhandling.Vätningsegenskaper är viktiga för isbildning på ytor från vätskefas(ofta underkylt vatten), och det har visats att vattenavstötande ytor i vissasammanhang kan motverka isbildning. Med detta i åtanke framställdesolika hydrofoba och superhydrofoba ytor, med varierande kemi,morfologi och ytråhet. Eftersom en förändring i de hydrofoba ytornasvätningsegenskaper kan påverka deras funktion studerades vätningsstabilitetenför dessa ytor. I synnerhet dynamiska vätningsstudier av dehydrofoba ytorna avslöjade vilka ytegenskaper som är fördelaktiga förvätningsstabiliteten. Vidare studerades hur temperaturen, särskilt undernoll grader, påverkar vätningstillståndet på släta och nanostruktureradehydrofoba ytor. Arbetet kompletterades med studier av vätningsstabilitetenför vattendroppar på släta samt mikro- och multistrukturerade(mikro-nano) hydrofoba ytor under flera frysningsupptiningscykler.För att vara i linje med de flesta tillämpningar, utfördesalla temperaturkontrollerade mätningar i en miljö där frost kunde bildaspå ytorna. Anti-isegenskaperna hos de hydrofoba ytorna med varierandetopografi men samma kemi studerades vidare genom att studera hur långtid det dröjde innan en vattendroppe på ytan fryste vid en visstemperatur.De dynamiska vätningsstudierna på hydrofoba ytor med samma kemimen olika topografi avslöjade att en ytråhet på flera längdskalor kan haen positiv inverkan på vätningsstabiliteten. När dessa ytor är exponeradeför låga temperaturer är dock vätningshysteresen under en nedkylnings-/uppvärmnings-cykel significant. Den temperatur-inducerade hysteresenär också betydande för superhydrofoba ytor. Detta tillskriver jag  kondensation på ytan som följs av frostbildning, vilket i sin tur möjliggörspridning av den underkylda vattendroppen på ytan. Mätning avfördröjningen i frysningsförloppet påvisade ingen betydande effekt avyttopografin för hydrofoba ytor, men släta hydrofoba ytor uppvisade denlängsta fördröjningen. Dessa resultat är i överensstämmelse med rådandeheterogen iskärnbildningsteori, som visar på fördelaktig iskärnbildningpå konkava delar av ytan, förutsatt att dessa väts.I den andra delen av avhandlingen utnyttjar jag observationerna frånden första delen vilka illustrerade begränsningarna för superhydrofobaytor, och söker en annan lösning. Avisningsegenskaper för hydrofilastarkt hydratiserade ytor studerades, med hypotesen att hydratiseringkan smörja gränsskiktet med is. Temperatur-kontrolleradeisadhesionsmätningar ned till -25 °C utfördes på adsorberade skikt av enpolymer med många sidokedjor av polyetylenoxid (”bottle-brush”), såvälsom på ett skikt av linjär polyetylenoxid. Isadhesionen blev kraftigtreducerad på ”bottle-brush”-polymeren, speciellt vid temperaturer högreän -15°C. Däremot kunde knappast ingen minskad isadhesion observerasför den linjära polymeren. Dessa observationer överensstämmer meddifferentialskanningskalorimetri (DSC) data, som visar att dethydratiserade vattenskiktet, vilket är bundet till ”bottle-brush”-polymeren, är i vätskeform vid de temperaturer där avisningsfördelar ärobserverade. För att vidare undersöka hypotesen att det vore fördelaktigtmed ett naturligt smörjande skikt på ytan för att uppnå godaavisningsegenskaper, utförde jag isadhesionsmätningar på molekylärtsläta glimmerytor ner till -35 °C. Intressant nog uppmättes extremt lågisadhesion på denna yta. Detta relaterar jag till den föreslagna utprägladehydratiseringsstrukturen, bestående av ett första is-liknande vattenskiktutan fria OH-grupper, följt av ett mer bulkliknande skikt. Detta ikombination med den molekylärt släta naturen hos glimmer resulterar iett perfekt plan för isen att glida på. / <p>QC 20160504</p> / TopNano
4

Isotope systematics of gypsum and its hydration water

Evans, Nicholas Philip January 2019 (has links)
Triple oxygen and hydrogen isotope analysis of the structurally-bound water in gypsum can provide a direct measure of past hydrologic variability. This thesis presents the development of the water extraction and isotopic measurement procedures, the calculation of the gypsum-water isotope fractionation factors, and the application of the method to constrain the palaeohydrologic conditions in two temporally and geographically disparate sites. Measurement of the isotopic composition of gypsum hydration water is used to examine the hydrological changes that occurred during the Terminal Classic Drought of the Maya lowlands (~800-1000 CE), coincident with the period when the Classic Maya Civilization of Mesoamerica collapsed. The data provide a complete and direct archive of hydrological conditions that have previously been limited to ice core records. Mean annual rainfall is shown to have decreased by between 41% and 54%, with intervals of up to 70%, compared to present-day conditions. This study has also shown for the first time that relative humidity was 2%-7% lower during the Terminal Classic Drought compared to today. The methodology is also applied to the massive gypsum deposits in the marginal and deep basins of the Mediterranean to interpret the chemical evolution of parent water bodies during the Messinian Salinity Crisis (5.97-5.3 Ma). By combining the measurement of gypsum hydration water with other traditional (e.g. strontium) and novel (e.g. calcium and barium) isotope tracers, the hydrological changes during the deposition of Primary Lower Gypsum units of the Sorbas Basin in southeastern Spain, the Upper Gypsum units of Sicily, and deep basin deposits have been constrained. The results indicate that all deposits experienced a significant freshwater contribution to the mother fluids from which they formed. It is proposed that obliquity-controlled sea level and eccentricity-modulated precession, superimposed on longer-term tectonic restriction of the Mediterranean-Atlantic exchange, together controlled the varying depositional environments during the formation of the Messinian Salt Giant. This thesis demonstrates that the analysis of gypsum hydration water is a powerful tool for palaeoclimate reconstruction. The methodology can be applied to gypsum (and other hydrated minerals) in a wide range of settings across geological space and time, providing a rich source of information about the environmental conditions under which they formed.

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