The evolutionary distance of lampreys from humans in conjunction with their distinct antibody architecture is profound. Thus, lampreys may provide antibodies with specificity for antigens unrecognized by conventional mammalian antibodies. This study investigates lamprey based monoclonal variable lymphocyte receptor antibodies (VLRs) for purifying and identifying an antigen by tandem mass spectrometry. VLRs specific for clinically relevant cell populations were isolated. Subsequently, utilizing intrinsic VLR affinity, with or without covalent cross-linking molecules, for immunoprecipitating VLR protein antigens was tested. In one case, CD5 glycoprotein from Jurkat T cells was purified by a VLR; the antigen was identified by tandem mass spectrometry. Antibody specificity was validated by western blotting and flow cytometry. Furthermore, VLR binding to CD5 required multimerization of the antibody, indicating the individual VLR units likely bind antigen with low affinity. The study provides ‘proof of concept’ for human biomarker identification using novel lamprey monoclonal antibodies.

The sea lamprey (Petromyzon marinus) undergoes programmed genome rearrangements (PGRs) during embryogenesis that results in the deletion of ~0.5 Gb of germline DNA from the somatic lineage. The underlying mechanism of these rearrangements remains largely unknown. miRNAs (microRNAs) and piRNAs (PIWI interacting RNAs) are two classes of small noncoding RNAs that play important roles in early vertebrate development, including differentiation of cell lineages, modulation of signaling pathways, and clearing of maternal transcripts. Here, I utilized next generation sequencing to determine the temporal expression of miRNAs, piRNAs, and other small noncoding RNAs during the first five days of lamprey embryogenesis, a time series that spans the 24-32 cell stage to the formation of the neural crest. I obtained expression patterns for thousands of miRNA and piRNA species. These studies identified several thousand small RNAs that are expressed immediately before, during, and immediately after PGR. Significant sequence variation was observed at the 3’ end of miRNAs, representing template-independent covalent modifications. Patterns observed in lamprey are consistent with expectations that the addition of adenosine and uracil residues plays a role in regulation of miRNA stability during the maternal-zygotic transition. We also identified a conserved motif present in sequences without any known annotation that is expressed exclusively during PGR. This motif is similar to binding motifs of known DNA binding and nuclear export factors, and our data could represent a novel class of small noncoding RNAs operating in lamprey.

No description available.

Within the frame of the ichthyological survey of the Malše River in Dolní Dvořiště and several river profiles upstream the Kaplice town the presence of brook lamprey (Lampetra planeri) was proved. In years 2007-2009 in six localities of the Malše River between Dolní Dvořiště and Kaplice town the occurrence of the species was proved. Lamprey larvae created more than 90%, catch of adult lampreys was low. In time period investigated the densities were relatively low (8 inds./m2 maximally) and were not significantly different between compared years and localities sampled. Lampreys densities were influenced by current speed and rate of shade. Physical {--} chemical parameters of water (temperature, pH, oxygen concentration, conductivity) and also water depth and thickness of sediment were in the range of optimal values in the sampled microhabitats so any correlations between these parameters and densities of lampreys were not observed.

The aim of the present diploma thesis was to prove the habitation of brook lamprey near Dolní Dvořiště. Biotopes with habitat preferences of brook lamprey were described. During the ichtological investigation of the catchment area of the Malše river in the years 2007 - 2008, brook lamprey was successfully located on sites in Dolní Dvořiště and near Všeměřický quarry. The sites had the same character as trout streams. Length -frequency distribution of the brook lamprey larvae was executed. The species assemblage of ichtofauna of the sites with brook lamprey habitation was described. In the years 2008-2009 other possible biotopes were mapped in connection to the sites in Malše and Tichá where brook lamprey had been located before.

Les vertébrés font partie des animaux à symétrie bilatérale mais celle-ci n'est pas parfaite et de nombreuses asymétries sont visibles entre les côtés gauche et droit, notamment au niveau du système nerveux. L'épithalamus s'est imposé comme le modèle de référence pour l'étude des mécanismes de latéralisation du cerveau. Cette structure dérivée du diencéphale dorsal se compose de deux noyaux bilatéraux, les habénulæ et du complexe pinéal, qui regroupe les glandes pinéale et parapinéale. Les habénulæ présentent des asymétries plus ou moins marquées chez tous les grands groupes de vertébrés. La parapinéale est également asymétrique mais elle est absente dans de nombreux taxa. Chez le poisson zèbre, espèce modèle de référence pour l'étude des mécanismes de formation des asymétries épithalamiques, une migration latéralisée de la parapinéale est nécessaire à l'élaboration des asymétries habénulaires. Les mécanismes génétiques sous-jacents ont également été en partie décryptés. La première asymétrie visible dans le diencéphale dorsal correspond à une activité de la voie de signalisation Nodal à gauche. Si cette voie Nodal est essentielle pour induire une asymétrie neurogénétique précoce, elle ne l'est pas pour la formation des asymétries épithalamiques définitives. Son rôle se restreint à biaiser la directionnalité des asymétries en influençant la migration de la parapinéale. Les asymétries habénulaires sont induites par la position finale de la parapinéale. La conservation à l'échelle des vertébrés des mécanismes décrits chez le poisson-zèbre reste une question ouverte. Au cours de ce travail de thèse, j’ai cherché à comprendre l’évolution de ces mécanismes en étudiant un chondrichtyen, la roussette Scyliorhinus canicula et des cyclostomes, les lamproies Petromyzon marinus et Lampetra planeri. Leur position phylogénétique ainsi que les asymétries majeures en taille observées entre les habénulæ gauche et droite font de ces espèces de bons modèles pour comprendre leur origine chez les vertébrés. Mes travaux conduisent à trois conclusions principales :(1) on retrouve, comme chez le poisson zèbre, une expression asymétrique de la voie Nodal dans le diencéphale dorsal gauche de la lamproie et de la roussette; la directionnalité de cette asymétrie est conservée entre les trois espèces, ce qui permet d’exclure une inversion de latéralité précédemment proposée chez la lamproie sur la base d’arguments de taille relative des habénulæ(2) La voie Nodal est essentielle à la formation des asymétries habénulaires chez la roussette et la lamproie, ce qui suggère un rôle ancestral dans l’élaboration des asymétries épithalamiques.(3) une analyse détaillée des patrons de prolifération-différenciation des habénulæ au cours du développement de la roussette met en évidence des asymétries moléculaires et cellulaires multiples ; elle démontre en particulier l’existence d’une neurogenèse asymétrique qui débute plus précocement à gauche. Ces travaux donnent un éclairage nouveau sur l’origine et la diversification des mécanismes contrôlant la formation des asymétries cérébrales chez les vertébrés. L’étude de la roussette et la lamproie, deux organismes modèles non conventionnels, ouvrent de nouvelles perspectives pour leur compréhension. / Vertebrates are part of the bilaterally symmetric animals but this one is not perfect and numerous asymmetries can be seen between the left and right sides, especially in the nervous system. The epithalamus has proven itself to be the model system for brain lateralization mechanisms’ studies. This structure derived from the dorsal diencephalon contains by the bilaterally paired habenular nuclei and the pineal complex, which includes the pineal gland and parapineal organ. The habenulae exhibit more or less marked left-right asymmetries among most of the major vertebrate taxa. The parapineal is also asymmetrical but it is absent in many taxa. Zebrafish is the model system for the studies of the developmental mechanisms of epithalamic asymmetries. In this species, a lateralized parapineal migration is required for the establishment of habenular asymmetries. The underlying genetic mechanisms have also been partially decrypted. The first conspicuous asymmetry in the dorsal diencephalon corresponds to a left-sided expression of components of the Nodal signalling pathway. This asymmetric Nodal signalling activity is essential to induce an early neurogenetic asymmetry but not necessary the formation of epithalamic asymmetries per se. Its role is restricted to provide a bias to the parapineal organ’s lateralized migration, and thus influence the laterality of epithalamic asymmetries. Indeed, habenular asymmetries are induced by the final position of the parapineal organ. Conservation of these mechanisms described in zebrafish across vertebrates remains an open question. During this thesis, I tried to understand the evolution of these mechanisms by studying a Chondrichthyes, the catshark Scyliorhinus canicula and cyclostomes, the lampreys Petromyzon marinus and Lampetra planeri. Their phylogenetic position and the major asymmetries in size observed between their left and right habenulae make these species good model systems to understand the origin of these mechanisms in vertebrates. My work leads to three main conclusions:(1) As in zebrafish, we have found an asymmetric expression of the components of the Nodal signalling pathway in the left dorsal diencephalon of the catshark and the lamprey. The laterality of the asymmetry is conserved between these three species, which allows us to exclude a reversed laterality in lampreys like it was proposed on the basis of arguments related to the size of habenular nuclei.(2) The Nodal signalling pathway is requied for the establishment of habenular asymmetries in the catshark and lamprey thus suggesting an ancestral role in the development of epithalamic asymmetries.(3) A detailed analysis of proliferation-differentiation patterns in the catshark habenulae during their development highlighted multiple cellular and molecular asymmetries. In particular it showed the existence of an earlier left-sided asymmetric neurogenesis.These studies provide new insights about the origin and diversification of the mechanisms controlling the establishment of vertebrates’ brain asymmetries. The study of the lamprey and the dogfish, two unconventional model systems open new perspectives for their understanding.

Le but de toute étude en biologie évolutive du développement est l’étude des mécanismes développementaux à l’origine des diversifications morphologiques. Dans ce contexte, j’ai décidé de me focaliser sur l’émergence des Vertébrés au cours de l’évolution, par la mise en œuvre d’études comparatives entre différents modèles de Deutérostomiens. Le travail réalisé durant ma thèse est subdivisé en trois projets: (i) j’ai abordé le lien entre l’évolution du cerveau chez les Chordés et les modifications de la signalisation à l’acide rétinoïque (AR) au cours du développement. En particulier, j’ai examiné les rôles de l’AR au cours du développement du cerveau chez la lamproie Lampetra fluviatilis, et j’ai comparé les résultats obtenus chez cette espèce aux mécanismes développementaux agissant chez l’amphioxus, un Chordé invertébré, et chez les modèles gnathostomes classiques. Les données obtenues lors de ces analyses comparatives ont permis une meilleure compréhension de l’évolution de la régionalisation cérébrale chez les Vertébrés. (ii) j’ai étudié l’évolution des séquences régulatrices présentes au sein des clusters de gènes hox, connus pour agir dans la régionalisation du système nerveux des Chordés. L’identification d’éléments non-codants conservés ainsi que d’éléments de réponse à l’AR (RARE) potentiels dans des clusters hox de Chordés, combinée à la caractérisation de RAREs in vivo en cellules murines a permis une vision intégrée de l’évolution du contrôle des gènes hox par l’AR, chez les Chordés. (iii) j’ai analysé l’évolution des microARNs chez les Chordés en comparant les répertoires microARN chez plusieurs espèces de Deutérostomiens. Cette étude a permis d’émettre de nouvelles hypothèses quant à l’émergence des microARNs chez les animaux. Toutes ces analyses ont abordé différents aspects de l’évolution des Chordés avec pour objectif la proposition d’une vision intégrée des mécanismes moléculaires à l’origine de l’émergence des Vertébrés. / The aim of the evolutionary developmental biology is to study the developmental mechanisms at the base of morphological diversification. In this context, I decided to focus my attention on the emergence of vertebrates during evolution by carrying out comparative analyses in several deuterostome models. The work carried out during of my thesis can be subdivided into three major projects: (i) I addressed the link between brain evolution and modifications in retinoic acid (RA) signaling during chordate development. In particular, I investigated the roles of RA signaling in brain development in a jawless vertebrate, the lamprey Lampetra fluviatilis, and compared the results with developmental mechanisms in the invertebrate chordate amphioxus and classical developmental model systems in jawed vertebrates. Data obtained from these comparative studies provided insights into the evolution of brain patterning in vertebrate evolution. (ii) I investigated the evolution of the regulatory landscape of hox gene clusters that are known to be fundamental for the patterning of the chordate central nervous system. The identification of conserved non-coding elements and putative RA response elements (RAREs) in hox clusters of different chordate species combined with the in vivo characterization of functional RAREs in mouse F9 cells provided an integrated view of the evolution of RA-dependent hox cluster regulation in chordates. (iii) I studied the roles of microRNAs (miRNAs) in chordate evolution by comparing the miRNA complements of different deuterostome species. This analysis provided novel insights about the general mechanisms of miRNA emergence in animals and highlighted species-specific miRNA complement amplifications in different deuterostome lineages. In sum, these studies have tackled different aspects of chordate evolution from an evo-devo perspective, aiming at an integrated view of the molecular mechanisms underlying vertebrate diversification.

One of the oldest, extant, lineages of vertebrates, the sea lamprey, was used to clarify the evolutionary origin and divergence of the growth hormone receptor (GHR) family. A single, full-length, cDNA, and a second, partial, cDNA were identified and shown to encode proteins that share amino acid identity with GHRs and prolactin receptors (PRLR s) previously identified. The complexity of the dynamic signaling system, with special emphasis on this system in fish and in the context of the evolution of this system, is discussed in the first chapter. The second chapter integrates the new insights gained by these studies. Included is a newly proposed phylogenetic analysis and revised nomenclature-system for vertebrate GHRs that better represents the evolutionary history of the receptor family. The molecular evolution of the receptors is, furthermore, highlighted as the backdrop for the continued discussion regarding how the GH-family of hormones exhibit such coordinated and pleiotropic actions.

No description available.

No description available.