The biosynthesis of wax components containing secondary functional groups was investigated in the current study. Two fundamentally different pathways were proposed to introduce the secondary functional groups. One pathway involves hydroxylation of elongated substrates. Wax components characterized by two functional groups located on or near the centre of the carbon chain, nonacosane-14,15-diol, -14,16-diol and -13,15-diol as well as corresponding ketols were identified for the first time in Arabidopsis stem wax. The alkanediols and ketols were dominated by the C-14,15 isomers. The absence of alkanediols and ketols in Arabidopsis mah1 mutants that are deficient in secondary alcohol biosynthesis confirmed the biosynthetic relationship between secondary alcohols and alkanediols/ketols (Chapter 3). In pea (Pisum sativum) leaf wax, two novel compound classes were identified as primary/secondary alcohols dominated by octacosane-1,14-diol and secondary/secondary alkanediols hentriacontane-9,16-diol, -8,15-diol and -10,17-diol. Co-localization of the secondary/secondary alkanediols and hentriacontan-15-ol and -16-ol pointed to a biosynthetic relationship (Chapter 4). The diverse structures of compounds identified in the current study suggested that hydroxylases can use substrates other than alkanes. The predominance of isomers within homologues indicated a regiospecificity of the hydroxylases involved in wax biosynthesis. In addition to hydroxylation, secondary functional groups could also be introduced through elongation of carbon chains. Homologous series of 5-hydroxyaldehydes (C₂₄ and C₂₆-C₃₆) and 1,5-alkanediols (C₂₈-C₃₈) were identified in yew (Taxus baccata) needle wax. The relative position of both functional groups suggested that these two compound classes are biosynthetically related and their secondary functional groups are introduced during elongation (Chapter 5). The results of incubation of ¹⁴C-labeled malonyl-CoA and acyl-CoAs with different chain lengths in the presence of California poppy (Eschscholzia californica) microsomes provided the first evidence to support the elongation hypothesis. The results indicated that a carbonyl group rather than a hydroxyl group is introduced during elongation. To provide molecular tools for further investigations of the hypothetical pathway, three full length cDNAs encoding putative KCSs were cloned and one of them, PKCSI, was functionally characterized.

Els residus carnis, o subproductes animals, són interessants per al procés de digestióanaeròbia i producció de biogàs, donat el seu elevat potencial energètic i l'actual marc legislatiu que prima la producció d'energia renovable. Tot i així, l'elevat contingut en lípids i proteïnes d'aquests residus pot limitar el seu tractament en introduir fenòmens d'inhibició, dels quals el més important és el produït pels àcids grassos de cadena llarga (AGCL), resultants de la hidròlisi dels lípids. L'objectiu de la present tesis és aprofundir en el coneixement d'aquest procés d'inhibició, en la capacitat d'adaptació dels microorganismes i en la recuperació o prevenció dels fenòmens d'inhibició. En una primera aproximació a la problemàtica, es caracteritzen residus orgànics d'escorxador, s'estudia la seva biodegradabilitat anaeròbia amb diferents relacions lípids/proteïnes i es realitzen assaigs discontinus seqüencials incrementant la concentració de substrat mitjançant pulsos consecutius. Es comprova que la hidròlisi i acidogènesi de proteïnes és molt ràpida i que la degradació dels lípids i AGCL limita la velocitat global del procés. Malgrat aquesta limitació, el sistema es recupera després dels pulsos aplicats, tot augmentant la taxa màxima de producció de metà. Per tal d'estudiar el fenòmen de recuperació, s'estudien i desenvolupen diferents estratègies en reactors sotmesos a processos d'inhibició per AGCL. L'increment dels ratis biomassa/AGCL o l'adició d'additius com la bentonita, per tal de reduir la biodisponibilitat o l'adsorció dels AGCL sobre la biomassa activa, es mostren com estratègies funcionals d'utilitat en l'operació de plantes industrials. Els resultats obtinguts reforcen la hipòtesi de que la inhibició és deguda a adsorció d'AGCL sobre la membrana cel·lular i que la recuperació es pot mesurar mitjançant un augment de l'activitat dels microorganismes. Per tal de dilucidar sobre la natura del augment de l'activitat en els processos de recuperació es caracteritza la inhibició-recuperació mitjançant tres tècniques: 1) estudi de les activitats dels microorganismes a diferents substrats 2) utilització de tècniques de biologia molecular per caracteritzar les poblacions, i 3) desenvolupant expressions cinètiques del procés d'inhibició, basades en l'adsorció, en el marc del model matemàtic ADM1 de la International Water Association. Mitjançant aquestes metodologies es comprova que els fenòmens d'inhibició i adaptació es poden explicar mitjançant un creixement poblacional específic i la inclusió dels fenòmens físic d'adsorció en el procés d'inhibició metabòlica. Finalment, s'avalua de forma més detallada el procés d'adsorció-inhibició mitjançant la determinació de les isotermes d'adsorció i monitoritzant mitjançant assaigs amb biomassa granular i tècniques de microscòpia de fluorescència. Aquesta caracterització ha permès obtenir estratègies de prevenció de la inhibició per AGCL, mitjançant competència amb adsorbents sintètics, i concloure que l'àcid palmític és el limitant en el procés de -oxidaciódels AGCL. Els resultats obtinguts constitueixen una base per al millor coneixement de les possibilitats de tractament anaerobi del residus carnis i dels processos d'inhibició per AGCL i adaptació de la biomassa. El procés físic d'adsorció ha estat directament relacionat amb el fenòmen d'inhibició metabòlica, obtenint-se una descripció matemàtica del mateix. Els resultats han permès plantejar estratègies operacionals, sent una eina a disposició d'operadors de plantes de biogàs per optimitzar la producció d'energia d'aquests residus >mitjançant la seva digestió anaeròbia. / Los residuos cárnicos, o subproductos animales, son interesantes para el proceso de digestión anaerobia y producción de biogás, dado su elevado potencial energético y el actual marco legal que prima la producción de energía renovable. A pesar de esto, el elevado contenido en lípidos y proteínas puede limitar su tratamiento, al introducir fenómenos de inhibición, de los cuales el más importante es el producido por ácidos grasos de cadena larga (AGCL), resultado de la hidrólisis de los lípidos. El objetivo de la presente tesis es profundizar en el conocimiento de este proceso de inhibición, en la capacidad de adaptación de los microorganismos t en la recuperación de sistemas inhibidos. En una primera aproximación a la problemática, se caracterizan los residuos orgánicos de matadero, se estudia su biodegradabilidad anaerobia con diferentes relaciones lípido/proteína y se realizan ensayos discontinuos secuenciales incrementando la concentración de substrato mediante pulsos consecutivos. Se comprueba que la hidrólisis y acidogénesis de las proteínas es muy rápido y que la degradación de lípidos y AGCL limita la velocidad global del proceso. A pesar de esta limitación, el sistema se recupera después de los pulsos aplicados aumentando la tasa máxima de producción de metano. A fin de estudiar el fenómeno de recuperación, se estudian y desarrollan diferentes estrategias en reactores inhibidos por AGCL. El incremento de los ratios biomasa/AGCL o la adición de aditivos como la bentonita, a fin de reducir la biodisponibilidad o la adsorción de los AGCL sobre la biomasa activa, se muestran estrategias funcionales de utilidad en la operación de plantas industriales. Los resultados obtenidos refuerzan la hipótesis de que la inhibición es debida a adsorción de AGCL sobre la membrana celular y que la recuperación se puede medir mediante un aumento de la actividad de los microorganismos. A fin de dilucidar sobre la naturaleza del aumento de la actividad en los procesos de recuperación se caracteriza la inhibición mediante tres técnicas: 1) estudio de las actividades de los microorganismos a diferentes substratos, 2) utilización de técnicas de biología molecular para caracterizar las poblaciones, y 3) desarrollando expresiones cinéticas del proceso de inhibición, basado en la adsorbió, en el marco del modelo ADM1 de la International Water Association. Mediante estas metodologías se comprueba que los fenómenos de inhibición y adaptación se pueden explicar mediante un crecimiento poblacional específico y la inclusión de la adsorción en el proceso de inhibición metabólica. Finalmente, se evalúa de forma detallada el proceso de adsorción-inhibición mediante la determinación de las isotermas de adsorción y monitorizando estos procesos mediante ensayos discontinuos con biomasa granular y técnicas de microscopia de fluorescencia. Esta caracterización ha permitido obtener estrategias de prevención de la inhibición por AGCL, mediante competencia con adsorbentes sintéticos, y concluir que el ácido palmítico es el limitante en el proceso de mutante -oxidación de los AGCL. Los resultados obtenidos constituyen una base para el mejor conocimiento de las posibilidades de tratamiento anaerobio de residuos cárnicos y de los procesos de inhibición por AGCL y adaptación de la biomasa. El proceso físico de adsorción se ha relacionado directamente con el fenómeno de inhibición metabólica, obteniéndose una descripción matemática del mismo. Los resultados han permitido plantear estrategias operacionales, siendo una herramienta a disposición de operadores de plantas de biogás para optimizar la producción de energía de estos residuos mediante su digestión anaerobia. / Slaughterhouse wastes are interesting for the anaerobic digestion process regarding its high biogas production potential and because the current legal scenario promotes renewable energy production. The high lipid and protein content of those residues limit its treatment due to inhibitory processes, in particular the inhibition caused by long chain fatty acids (LCFA). The objective of the present disertation is to obtain a deeper insight on the LCFA inhibition process, the microorganism adaptation ability and the prevention/recovery of inhibitory phenomena. In a preliminary approach, organic wastes generated in slaughterhouses are characterized, by studying the anaerobic biodegradability of waste mixtures containing diferents lipid/proteins concentrations. Anaerobic batch tests are performed at increasing substrate concentrations by sequential pulse feeding. From those experiments, the fast hydrolysis-acidogenesis of proteins is verified, being the lipids and LCFA degradation the main limiting step of the overall anaerobic process. Despite this limitation, the system is able to recover up to a higher methane production rate after each applied pulse. In order to elucidate on the mechanisms of the recovery process, several strategies to recover LCFA inhibited reactors are tested. The increase of the biomass/LCFA ratio and the adition of bentonite to reduce the biodisponibility or the adsorption of LCFA over microbial cell walls, are found to be effective approaches in the operation of fullscale biogas plants. The obtained results reinforce the hypothesis of the adsorptive nature of the LCFA inhibition, and that the recovery process can be followed as an increase in the microbial activity. The nature of the reported microbial activity improvement after subsequent sytem inhibition is characterized by three different techniques: 1) the study of specific microbial activities on different model substrates, 2) the application of molecular biology tools to monitor the microbial population structure and, 3) the development of kinetic expressions of the LCFA inhibition phenomena, based on the adsorption process, within the framework of ADM1 model of the International Water Association. The combined analysis of those confirmed that inhibition and adaptation phenomena are explained by a specific microbial growth, including adsorption in the metabolic LCFA inhibition process. The adsorption-inhibition process is evaluated in detail by determining LCFA adsorption isotherms on granular sludge, LCFA toxicity test, and fluorescence microscopy techniques. This multidisciplinary approach results in the definition of an inhibition preventing strategy based on the introduction of competitive adsorbents, and on stating the importance ofpalmitate during ß-oxidation of LCFA. This study contributes to the understanding of slaughterhouse wastes anaerobic treatment, the LCFA inhibition process, and the biomass adaptation phenomena. The physical adsorption process has been directly related with the LCFA metabolic inhibition, and a new mathematical kinetic expression is proposed. New strategies guiding the operation of anaerobic reactors are suggested in order to obtain high renewable energy yields from slaughterhouse wastes digestion.

The biosynthesis of wax components containing secondary functional groups was investigated in the current study. Two fundamentally different pathways were proposed to introduce the secondary functional groups. One pathway involves hydroxylation of elongated substrates. Wax components characterized by two functional groups located on or near the centre of the carbon chain, nonacosane-14,15-diol, -14,16-diol and -13,15-diol as well as corresponding ketols were identified for the first time in Arabidopsis stem wax. The alkanediols and ketols were dominated by the C-14,15 isomers. The absence of alkanediols and ketols in Arabidopsis mah1 mutants that are deficient in secondary alcohol biosynthesis confirmed the biosynthetic relationship between secondary alcohols and alkanediols/ketols (Chapter 3). In pea (Pisum sativum) leaf wax, two novel compound classes were identified as primary/secondary alcohols dominated by octacosane-1,14-diol and secondary/secondary alkanediols hentriacontane-9,16-diol, -8,15-diol and -10,17-diol. Co-localization of the secondary/secondary alkanediols and hentriacontan-15-ol and -16-ol pointed to a biosynthetic relationship (Chapter 4). The diverse structures of compounds identified in the current study suggested that hydroxylases can use substrates other than alkanes. The predominance of isomers within homologues indicated a regiospecificity of the hydroxylases involved in wax biosynthesis. In addition to hydroxylation, secondary functional groups could also be introduced through elongation of carbon chains. Homologous series of 5-hydroxyaldehydes (C₂₄ and C₂₆-C₃₆) and 1,5-alkanediols (C₂₈-C₃₈) were identified in yew (Taxus baccata) needle wax. The relative position of both functional groups suggested that these two compound classes are biosynthetically related and their secondary functional groups are introduced during elongation (Chapter 5). The results of incubation of ¹⁴C-labeled malonyl-CoA and acyl-CoAs with different chain lengths in the presence of California poppy (Eschscholzia californica) microsomes provided the first evidence to support the elongation hypothesis. The results indicated that a carbonyl group rather than a hydroxyl group is introduced during elongation. To provide molecular tools for further investigations of the hypothetical pathway, three full length cDNAs encoding putative KCSs were cloned and one of them, PKCSI, was functionally characterized.

Quercetin-3-O-glucoside (Q3G), a glycosylated derivative of quercetin, is a polyphenolic compound known to possess diverse biological activities. Its moderately hydrophilic nature is a critical factor governing the accessibility to the active sites of oxidative damages in vivo. It was hypothesized that biological activities of Q3G can be further enhanced by regioselective acylation with fatty acids which gives more lipophilicity. Q3G was acylated with six selected long chain fatty acids: stearic acid, oleic acid, linoleic acid, ?-linolenic acid, eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA), using Candida antactica lipase. The derivatives were evaluated for their potential in inhibiting lipid oxidation in food systems and human low density lipoprotein (LDL), and cytoprotection and anti-inflammatory effect in cell culture model systems. The fatty acid derivatives of Q3G possessed greater effectiveness in inhibiting lipid oxidation in oil-in-water emulsions, and better cytoprotective effect against H2O2- and cigarette smoke toxicant-induced cytotoxicity when compared to Q3G.

The biosynthesis of wax components containing secondary functional groups was investigated in the current study. Two fundamentally different pathways were proposed to introduce the secondary functional groups. One pathway involves hydroxylation of elongated substrates. Wax components characterized by two functional groups located on or near the centre of the carbon chain, nonacosane-14,15-diol, -14,16-diol and -13,15-diol as well as corresponding ketols were identified for the first time in Arabidopsis stem wax. The alkanediols and ketols were dominated by the C-14,15 isomers. The absence of alkanediols and ketols in Arabidopsis mah1 mutants that are deficient in secondary alcohol biosynthesis confirmed the biosynthetic relationship between secondary alcohols and alkanediols/ketols (Chapter 3). In pea (Pisum sativum) leaf wax, two novel compound classes were identified as primary/secondary alcohols dominated by octacosane-1,14-diol and secondary/secondary alkanediols hentriacontane-9,16-diol, -8,15-diol and -10,17-diol. Co-localization of the secondary/secondary alkanediols and hentriacontan-15-ol and -16-ol pointed to a biosynthetic relationship (Chapter 4). The diverse structures of compounds identified in the current study suggested that hydroxylases can use substrates other than alkanes. The predominance of isomers within homologues indicated a regiospecificity of the hydroxylases involved in wax biosynthesis. In addition to hydroxylation, secondary functional groups could also be introduced through elongation of carbon chains. Homologous series of 5-hydroxyaldehydes (C₂₄ and C₂₆-C₃₆) and 1,5-alkanediols (C₂₈-C₃₈) were identified in yew (Taxus baccata) needle wax. The relative position of both functional groups suggested that these two compound classes are biosynthetically related and their secondary functional groups are introduced during elongation (Chapter 5). The results of incubation of ¹⁴C-labeled malonyl-CoA and acyl-CoAs with different chain lengths in the presence of California poppy (Eschscholzia californica) microsomes provided the first evidence to support the elongation hypothesis. The results indicated that a carbonyl group rather than a hydroxyl group is introduced during elongation. To provide molecular tools for further investigations of the hypothetical pathway, three full length cDNAs encoding putative KCSs were cloned and one of them, PKCSI, was functionally characterized. / Science, Faculty of / Chemistry, Department of / Graduate

abstract: Electro-Selective Fermentation (ESF) combines Selective Fermentation (SF) and a Microbial Electrolysis Cell (MEC) to selectively degrade carbohydrate and protein in lipid-rich microalgae biomass, enhancing lipid wet-extraction. In addition, saturated long-chain fatty acids (LCFAs) are produced via β-oxidation. This dissertation builds understanding of the biochemical phenomena and microbial interactions occurring among fermenters, lipid biohydrogenaters, and anode respiring bacteria (ARB) in ESF. The work begins by proving that ESF is effective in enhancing lipid wet-extraction from Scenedesmus acutus biomass, while also achieving “biohydrogenation” to produce saturated LCFAs. Increasing anode respiration effectively scavenges short chain fatty acids (SCFAs) generated by fermentation, reducing electron loss. However, the effectiveness of ESF depends on biochemical characteristics of the feeding biomass (FB). Four different FB batches yield different lipid-extraction performances, based on the composition of FB’s cellular structure. Finally, starting an ESF reactor with a long solid retention time (SRT), but then switching it to a short SRT provides high lipid extractability and volumetric production with low lipid los. Lipid fermenters can be flushed out with short a SRT, but starting with a short SRT fails achieve good results because fermenters needed to degrading algal protective layers also are flushed out and fail to recover when a long SRT is imposed. These results point to a potentially useful technology to harvest lipid from microalgae, as well as insight about how this technology can be best managed. / Dissertation/Thesis / Doctoral Dissertation Civil, Environmental and Sustainable Engineering 2019

Fats, oil and grease (FOG) are generated in large amounts by cooking and food processing. Anaerobic co-digestion with municipal sewage sludge has proven to be one of best alternatives for FOG disposal due to its high potential for biogas production. However, excessive addition of long chain fatty acid, the major content of FOG, has been reported to have inhibitory effects on the anaerobic digestion process and to cause operational challenges. In this study, high purity long chain fatty acids (LCFAs) including linoleic acid, oleic acid, and a mixture of oleic acid and stearic acid were added to laboratory completed mixed anaerobic digesters. The performance of the digesters in terms of solids destruction, COD degradation, LCFAs accumulation and gas production was investigated. After reaching steady state, a large amount of palmitic acid was found in the reactors with oleic acid addition and mixture of stearic and oleic acid addition. In the meantime, no palmitic acid increase was observed in reactors where linoleic acid was added. A better solids and COD reduction and a higher biogas production were observed in reactors with higher LCFAs addition. For reactors with the same dosage of LCFAs addition, linoleic acid addition resulted in the greatest improvement in digester performance; the mixture of stearic acid and oleic acid achieved the least increase in biogas production and solids and COD reduction. A high concentration of both palmitic and stearic acid in the reactors with oleic acid addition and with 20% mixed acid addition was observed. In contrast, linoleic acid and 30% mixed acid addition did not lead to a greater palmitic or stearic acid concentrations. Up to 30% of pure linoleic acid, oleic acid and mixed acid addition are able to enhance the performance of anaerobic digesters. It is recommended that the dosage of oleic acid be below 30% to avoid LCFAs accumulation and to increase reactor stability. / Master of Science

Anaerobic co-digestion of municipal sludge and food wastes high in chemical oxygen demand (COD) has been an area of interest for waste water treatment facilities looking to increase methane production, and at the same time, dispose of the wastes and increase the revenue. However, addition of food wastes containing fats, oils and grease (FOG) to the conventional anaerobic digestion process can be difficult and pose challenges to utilities. Incorporating these wastes into the treatment plants can potentially inhibit the digestion process. In this study four lab-scale, anaerobic digesters were operated under mesophilic conditions and fed municipal sludge. One of them served as the control, while the other three digesters were fed with different volumetric loadings of juice processing waste, cheese processing waste (whey), dissolved air flotation waste (DAF) from a food processor, and grease trap waste (GTW), in addition to the municipal sludge. The impact of these high strength wastes (HSWs) on digester performance was analyzed for a total period of 150 days. Among the parameters analyzed were pH, total and soluble COD (tCOD and sCOD), Total and Total Volatile Solids (TS and TVS), Total Ammonia Nitrogen (TAN), Total Kjeldahl Nitrogen (TKN), Volatile Fatty Acids (VFA), Long Chain Fatty Acids (LCFA), and alkalinity. Biogas was collected and analyzed for methane content. The dewatering characteristics of digested sludge were also studied. Volatile organic sulfur compounds were analyzed on the dewatered sludge in order to monitor odors. This study showed that different high strength wastes have different impacts on digester performance. HSWs have the ability to degrade along with municipal sludge and to increase biogas production. However, anaerobic digestion can be inhibited by the presence of FOG, and addition of these wastes might not always be cost effective. Careful selection of these wastes is necessary to ensure stable digester operation, while bringing about increases in gas production. Utilities need to be cautious before adding any high strength wastes to their digesters. / Master of Science

Master of Science / Department of Animal Sciences and Industry / James S. Drouillard / Christopher D. Reinhardt / The effects of supplementing forms of flaxseed on plasma and longissimus muscle (LM) fatty acid (FA) composition, finishing performance, and carcass characteristics were evaluated in five studies. In study 1, steers were fed diets with soy oil (SO), ground flaxseed (Flaxseed), or urea formaldehyde condensation polymer treated flaxseed (UFCP). In study 2, steers were fed diets with SO, linseed oil (LO), or a combination of flaxseed and field peas that was extruded (LinPro). Feeding flaxseed products increased (P < 0.01) α-linolenic acid (ALA), omega-3 FA, and decreased (P < 0.01) n-6:n-3 in LM compared to cattle fed SO. Feeding LinPro increased (P < 0.01) ALA, omega-3 FA, and decreased (P < 0.01) n-6:n-3 in LM compared to steers fed SO or LO. In studies 3 and 4, steers were fed diets with and without Flaxseed and implanted or not. Implanting improved (P ≤ 0.05) DMI, ADG, feed efficiency, HCW, and LM area compared to cattle not implanted. In study 4, cattle fed Flaxseed had increased (P < 0.01) ALA and omega-3 FA, and decreased (P < 0.01) n-6:n-3 in LM compared to cattle fed SO. In study 5, heifers were fed diets with 0% or 5% linseed meal, and administered with or without exogenous hormones (NHTC). Administering exogenous hormones improved (P ≤ 0.02) DMI, ADG, G:F, and HCW compared to NHTC cattle. Omega-3 FA increased in LM when cattle were supplemented with flaxseed products. Cattle fed LinPro achieved the highest levels of ALA and omega-3 FA. Flaxseed products did not interact with implants as a natural growth promoter in finishing cattle.

京都大学 / 新制・論文博士 / 博士(医学) / 乙第13429号 / 論医博第2233号 / 新制||医||1053(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 長船 健二, 教授 妹尾 浩, 教授 川口 義弥 / 学位規則第4条第2項該当 / Doctor of Medical Science / Kyoto University / DFAM