There are three main wave types present in the Sun’s atmosphere: Alfvén waves and fast and slow magnetoacoustic waves. Alfvén waves are purely magnetic and would not exist if it was not for the Sun’s magnetic field. The fast and slow magnetoacoustic waves are so named due to their relative phase speeds. As the magnetic field tends to zero, the slow wave goes to zero as the fast wave becomes the sound wave. When a resonance occurs energy may be transferred between the different modes, causing one to increase in amplitude whilst the other decreases. This is known as mode conversion. Mode conversion of fast and slow magnetoacoustic waves takes place when the characteristic wave speeds, the sound and Alfvén speeds, are equal. This occurs in regions where the ratio of the gas pressure to the magnetic pressure, known as the plasma β, is approximately unity. In this thesis we investigate the conversion of fast and slow magnetoacoustic waves as they propagate from low- to high-β plasma. This investigation uses a combination of analytical and numerical techniques to gain a full understanding of the process. The MacCormack finite-difference method is used to model a wave as it undergoes mode conversion. Complementing this analytical techniques are employed to find the wave behaviour at, and distant from, the mode-conversion region. These methods are described in Chapter 2. The simple, one-dimensional model of an isothermal atmosphere permeated by a uniform magnetic field is studied in Chapter 3. Gravitational acceleration is included to ensure that mode conversion takes place. Driving a slow magnetoacoustic wave on the upper boundary conversion takes place as the wave passes from low- to high-β plasma. This is expanded upon in Chapter 4 where the effects of a non-isothermal temperature profile are examined. A tanh profile is selected to mimic the steep temperature gradient found in the transition region. In Chapter 5 the complexity is increased by allowing for a two-dimensional model. For this purpose we choose a radially-expanding magnetic field which is representative of a coronal hole. In this instance the slow magnetoacoustic wave is driven upwards from the surface, again travelling from low to high β. Finally, in Chapter 6 we investigate mode conversion near a two-dimensional, magnetic null point. At the null the plasma β becomes infinitely large and a wave propagating towards the null point will experience mode conversion. The methods used allow conversion of fast and slow waves to be described in the various model atmospheres. The amount of transmission and conversion are calculated and matched across the mode-conversion layer giving a full description of the wave behaviour.

The exact mechanisms responsible for heating the solar atmosphere in regions such as the chromosphere (partially ionized) and the corona (fully ionized) remain quantitatively unknown. This thesis demonstrates that the ions can be heated by Alfven waves with low frequencies in fully and partially ionized low beta plasmas, which is contrary to the customary expectation. For the partially ionized case, we find the heating process to be less efficient than the scenario with no ion-neutral collisions, and that the heating efficiency depends on the ratio of ion-neutral collision frequency to the ion gyrofrequency. For Alfven waves propagating obliquely to the background magnetic field in fully ionized plasmas, we find the heating process to be more efficient than the situation with Alfven waves propagating along the background magnetic field. Furthermore, the simulation results show the parallel kinetic temperature can become even larger than the perpendicular component for the case of obliquely propagating Alfven waves.

In this Thesis the theoretical understanding of oscillations in coronal structures is developed. In particular, coronal loops are modelled as magnetic slabs of plasma. The effect of introducing inhomogeneities on the frequency of oscillation is studied. Current observations indicate the existence of magnetohydrodynamic (MHD) modes in the corona, so there is room for improved modelling of these modes to understand the physical processes more completely. One application of the oscillations, on which this Thesis concentrates, is coronal seismology. Here, the improved theoretical models are applied to observed instances of coronal MHD waves with the aim of determining information regarding the medium in which these waves propagate. In Chapter two, the effect of gravity on the frequency of the longitudinal slow MHD mode is considered. A thin, vertical coronal slab of magnetised plasma, with gravity acting along the longitudinal axis of the slab is studied, and the effect on the frequency of oscillation for the uniform, stratified and structured cases is addressed. In particular, an isothermal plasma, a two-layer plasma and a plasma with a linear temperature profile are studied. Here, a thin coronal loop, with its footpoints embedded in the chromosphere-photosphere is modelled, and the effects introduced by both gravity and the structuring of density at the footpoint layers are studied. In this case, gravity increases the frequency of oscillation and causes amplification of the eigenfunctions by stratification. Furthermore, density enhancements at the footpoints cause a decrease in the oscillating frequency, and can inhibit wave propagation, depending on the parameter regime. In Chapter three, the effects introduced to the transverse fast MHD mode when gravity acts across a thin coronal slab of magnetised plasma are considered. This study concentrates on the modification of the frequency due to the dynamical effect of gravity in the equation of motion, neglecting the effect of stratification. Here, gravity causes a reduction of the oscillating frequency of the fundamental fast mode, and increases the lower cutoff frequency. In effect, for this configuration, gravity allows the transition between body and surface modes, in a slab geometry. It is found, in these two studies, that each harmonic is affected in a unique manner due to structuring or stratification of density. With this knowledge, in Chapter four, a new parameter is derived; P1/2P2, the ratio of the period of the fundamental harmonic of oscillation to twice the period of its first harmonic. This parameter is shown to be a measure of the longitudinal structuring of density along a coronal loop, and the departure of this ratio from unity can yield information regarding the lengthscales of the structure. This process is highlighted using the known observations, indicating that P1/2P2 may prove to be a useful diagnostic tool for coronal seismology. Finally, in Chapter five, outwardly propagating coronal slow MHD modes are observed and are used to infer coronal parameters. The possibility of using these oscillations to infer near-resolution lengthscales in coronal loops -- fine-scale strands -- is also discussed. TRACE observations are used to determine the average period, phase speed, detection length, amplitude and energy flux for the propagating slow MHD mode. The indication is that the source of these oscillations appears very localised in space, and the driver only acts for a few periods, suggesting the perturbations are driven by leaky p-modes (solar surface modes).

Rotating convection in the Earth's core produces columnar vortices of radius ~10 km or less near the inner core boundary. Small-scale motions in the core can travel as Alfvén waves in the face of Ohmic diffusion, provided the ratio of the magnetic diffusion time th to the Alfvén wave travel time tA (measured by the Lundquist number S0) is much greater than unity. These motions transfer angular momentum from the core to the mantle, a process that can help explain variations in length of day. Vortices subject to the combined influence of a magnetic field and background rotation give rise to fast and slow Magneto-Coriolis (MC) waves whose damping is not well understood. This thesis investigates the long-time evolution of magneto hydrodynamic (MHD) waves generated by an isolated, small-scale motion in an otherwise quiescent, electrically conducting fluid. The first part of the study focuses on the damping of small-scale Alfvén waves, which is independent of rotation. For a plausible magnetic field strength in the Earth's core, it is shown that flows of lengthscale ~ 5 km or larger can propagate across the core as damped Alfvén waves on sub-decadal timescales. The second part of the study looks at MC waves generated from an isolated blob under rotation and a uniform axial magnetic field. The decay laws for these waves are obtained by considering the decay of fast and slow waves individually. While the fast waves are subject to strongly anisotropic magnetic diffusion, the slow waves diffuse isotopically. New timescales are derived for the onset of damping and the transition from the wave-dominated to the diffusion-dominated (quasi-static) phase of decay. This study shows for the first time that MC waves originating from small-scale vortices of magnetic Reynolds number Rm ~ 1 can be long-lived. The results of this study are extendible to small-scale MHD turbulence under rotation, whose damped wave phase has not been adequately addressed in the literature. Furthermore, it is thought that this study would help place a lower bound on the poloidal magnetic field strength in the Earth’s core.

One of the most persistent problem in solar physics is the identification of the mechanism that heats the solar corona and accelerates the fast solar wind. Magneto-hydrodynamic (MHD)waves play a crucial role in heating of the solar corona and acceleration of the solar wind. Different types of oscillations have been now observed by various instruments. These are interpreted as due to ubiquitous presence of MHD waves. The magnetic field plays a fundamental role in the propagation and properties of these MHD waves. The topology (structure)of the magnetic fields are different in different regions of the solar atmosphere viz., active regions (high-lying closed magnetic fields), quiet Sun (low-lying closed magnetic fields) and coronal holes (open magnetic fields). The purpose of this dissertation is to study the nature of these propagating MHD waves in different regions of the solar atmosphere. It is believed that polar coronal holes which connects the inner corona and the solar wind, are the source regions of the fast solar wind. The on-disk part of a polar coronal hole can be divided into network and internetwork regions. Long time series(sit-and-stare)data have been obtained from the SUMER/SoHO spectrometer in N iv 765Å and Ne viii 770Å spectral lines to search for the presence of waves in these two different regions from a statistical approach. The network bright regions indicate the presence of compressional waves with a dominant period of ≈ 25 min in both the lines. Moreover, we found that there is a difference in the nature of the wave propagation in the bright (‘network’), as opposed to the dark (‘internetwork’) regions, with the latter sometimes showing evidence of downwardly propagating waves that are not seen in the former. This is consistent with the magnetic topology, as open field lines are rooted in network regions whereas internetwork region has low lying closed field lines. From a measurement of propagation speeds, we found all waves are subsonic, indicating that the majority of them are slow magneto-acoustic in nature. The off-limb part of coronal holes can be divided into plume and inter-plume regions. The simultaneous observations were performed with EIS/Hinode and SUMER/SoHO spectrometer in Fe xii 195Å and Ne viii 770Å spectral lines respectively. We detected the presence of accelerating waves in a polar inter-plume region with a period of 15 min to 20 min in both the spectral lines and a propagation speed increasing from 130 ± 14 km s−1 just above the limb, to 330 ± 140 kms s−1 around 160” above the limb. These waves can be traced to originate from a bright region of the on-disk part of the coronal hole which can be visualized as the base of the coronal funnels. The adjacent plume region also shows the presence of propagating disturbance with the same range of periodicity but with propagation speeds in the range of 135 ± 18 kms s−1 to 165 ± 43 kms s−1 only. We found that the waves within the plumes are not observable (may be getting dissipated) far off-limb whereas this is not the case in the inter-plume region. We suggested that the waves are likely either Alfv´enic or fast magneto-acoustic in the inter-plume regions and slow magneto-acoustic in the plume regions. These results support the view that the inter-plume regions area preferred channel for the acceleration of the fast solar wind. The quiet Sun can be further divided into bright magnetic (network), bright non-magnetic and dark non-magnetic (internetwork) regions. Simultaneous observations were performed in Ca ii filtergram from SOT/Hinode, TRACE 1550Åpassband and with SUMER/SoHO spectrometer in N iv 765ÅandNe viii 770Åspectral lines to study the oscillations in these different regions. We detected the presence of long period oscillations with periods between 15 min to 30 min in bright magnetic regions. The oscillations were detected from chromospheric height to low coronal heights. Power maps showed that low period powers are mainly concentrated in dark regions whereas long period powers are concentrated in bright magnetic regions. We proposed that these 15 min and above periods can propagate up to the coronal heights through ‘magneto¬acoustic portals’. However in this case only with the spectral imaging data, it was not possible to identify the mode of wave propagation. To detect the presence of waves in active regions, we have analysed the imaging and spec¬troscopic data acquired during the total solar eclipse of 2006 and 2009 respectively. We found the oscillations of periods 27 s and 20 s in imaging data obtained in green (Fe xiv 5303Å) and red (Fe x 6374Å) coronal emission lines respectively. Significant oscillations with high proba¬bility estimates were detected at boundary of active region and in the neighbourhood, rather than within the loops itself. We also reported the detection of oscillations in intensity, velocity and line width having periods in the range of 25 s to 50 s with spectroscopic data again obtained in green and red coronal emission lines. These high frequency oscillations were interpreted in terms of presence of fast magneto-acoustic waves or torsional Alfv´en waves. These detected propagating MHD waves may carry sufficient energy to heat the corona and provide enough momenta to accelerate the fast solar wind. In addition, these waves may also provide input for the measurement of coronal magnetic field using the technique of ‘coronal seismology’.

The solar wind, magnetosphere and ionosphere are coupled by magnetohydrodynamic waves, and this gives rise to new and often unexpected behaviours that cannot be produced by a single, isolated part of the system. This thesis examines two broad instances of coupling: field-line resonance (FLR) which couples fast and Alfvén waves, and magnetosphere-ionosphere (MI-) coupling via Alfvén waves. The first part of this thesis investigates field-line resonance for equilibria that vary in two dimensions perpendicular to the background magnetic field. This research confirms that our intuitive understanding of FLR from 1D is a good guide to events in 2D, and places 2D FLR onto a firm mathematical basis by systematic solution of the governing equations. It also reveals the new concept of ‘imprinting’ of spatial forms: spatial variations of the resonant Alfvén wave correlate strongly with the spatial form of the fast wave that drives the resonance. MI-coupling gives rise to ionosphere-magnetosphere (IM-) waves, and we have made a detailed analysis of these waves for a 1D sheet E-region. IM-waves are characterised by two quantities: a speed v_{IM} and an angular frequency ω_{IM} , for which we have obtained analytic expressions. For an ideal magnetosphere, IM-waves are advective and move in the direction of the electric field with speed v_{IM}. The advection speed is a non-linear expression that decreases with height-integrated E-region plasma-density, hence, wavepackets steepen on their trailing edge, rapidly accessing small length-scales through wavebreaking. Inclusion of electron inertial effects in the magnetosphere introduces dispersion to IM-waves. In the strongly inertial limit (wavelength λ << λ_{e} , where λ_{e} is the electron inertial length at the base of the magnetosphere), the group velocity of linear waves goes to zero, and the waves oscillate at ω_{IM} which is an upper limit on the angular frequency of IM-waves for any wavelength. Estimates of v_{IM} show that this speed can be a significant fraction (perhaps half) of the E_{⊥} × B_{0} drift in the E-region, producing speeds of up to several hundred metres per second. The upper limit on angular frequency, ωIM , is estimated to give periods from a few hundredths of a second to several minutes. IM-waves are damped by recombination and background ionisation, giving an e-folding decay time that can vary from tens of seconds to tens of minutes. We have also investigated the dynamics and steady-states that occur when the magnetosphere-ionosphere system is driven by large-scale Alfvénic field-aligned currents. Steady-states are dominated by two approximate solutions: an ‘upper’ solution that is valid in places where the E-region is a near perfect conductor, and a ‘lower’ solution that is valid where E-region depletion makes recombination negligible. These analytic solutions are extremely useful tools and the global steady-state can be constructed by matching these solutions across suitable boundary-layers. Furthermore, the upper solution reveals that E-region density cavities form and widen (with associated broadening of the magnetospheric downward current channel) if the downward current density exceeds the maximum current density that can be supplied by background E-region ionisation. We also supply expressions for the minimum E-region plasma-density and shortest length-scale in the steady-state. IM-waves and steady-states are extremely powerful tools for interpreting MI-dynamics. When an E-region density cavity widens through coupling to an ideal, single-fluid MHD magnetosphere, it does so by forming a discontinuity that steps between the upper and lower steady-states. This discontinuity acts as part of an ideal IM-wave and moves in the direction of the electric field at a speed U = \sqrt{v_{IM} {+} v_{IM} {-}}, which is the geometric mean of v_{IM} evaluated immediately to the left and right of the discontinuity. This widening speed is typically several hundreds of metres per second. If electron inertial effects are included in the magnetosphere, then the discontinuity is smoothed, and a series of undershoots and overshoots develops behind it. These undershoots and overshoots evolve as inertial IM-waves. Initially they are weakly inertial, with a wavelength of about λ_{e}, however, strong gradients of ω_{IM} cause IM-waves to phase-mix, making their wavelength inversely proportional to time. Therefore, the waves rapidly become strongly inertial and oscillate at ω_{IM}. The inertial IM-waves drive upgoing Alfvén waves in the magnetosphere, which populate a region over the downward current channel, close to its edge. In this manner, the E-region depletion mechanism, that we have detailed, creates small-scale Alfvén waves in large-scale current systems, with properties determined by MI-coupling.