Thesis (Ph.D.) - University of Queensland, 2005. / Includes bibliography.

Thesis (Ph. D.)--Griffith University, 2003. / Title from PDF title page (viewed on May 5, 2005). Includes bibliographical references.

Thesis (M.Phil.) - University of Queensland, 2004. / Includes bibliography.

The magpie goose (Anseranas semipalmata) is a spectacular and unique waterbird from tropical north Australia and southern New Guinea. Due to recent human persecution, the species has been eliminated from most of its former strongholds in southern and south-eastern Australia – reduced to small conservation-dependent populations through habitat loss, exploitation and drought. Yet, genuine conservation opportunity still exists in northern Australia, in the country's Northern Territory in particular, to maintain viable populations through evidence-based management of wetlands that support the waterbirds and mitigation of the threats posed by global change. Much has been achieved over the last 50 years to understand the ecology and life history of magpie geese, but little has been done to understand important population-level interactions with wetland habitat and the likely outcomes under climate warming, wetland loss to sea level rise, altered competitive interactions among wetland plants, increased frequency and severity of epizootics, and synergies with over-hunting. My review of pathogens and parasites likely to cause morbidity and mass mortality in magpie geese shows that bacterial diseases such as avian cholera and botulism, as well as pathogenic avian influenza viruses, pose the most serious threats. Bacterial diseases in particular are more likely to occur under warmer and wetter conditions, and geese are susceptible to these given large aggregations at favoured nesting and feeding sites. I use a metapopulation model to demonstrate that increased frequency and severity of epizootics will likely force extirpation of geese under current harvest rates across the Northern Territory. Magpie geese are also vulnerable to climate change through dependency on a favoured food plant – the water chestnut (Eleocharis dulcis). As a result of a two-year field programme, I was able to show how birds seasonally migrate and aggregate in response to the availability of this resource and gain body condition following predation on the root tubers of the plants. My geospatial modelling of ocean level inundation of wetlands that support E. dulcis show marginal habitat loss under 1.4 m of sea level rise, and large-scale losses under multi-metre sea level rise, but the current resolution of GIS data do not account for fine-scale saline water intrusion through channel or eroded levees. The population models constructed predict that magpie geese are broadly resilient to change where harvest is tightly regulated, but current harvest rates are unlikely to be sustainable. Given the importance of maintaining viable, connected subpopulations large enough to maintain genetic diversity, and because of the value of magpie geese to Aboriginal Australians as a food source, ongoing monitoring of geese population trends will be essential. Wetland management options include erecting buffers to stop or slow down saltwater intrusion resulting from sea level rise, and implementing a system to monitor annual indigenous harvest. Temporary restrictions on harvest may be necessary following mass mortality events such as epizootics or droughts. Only the careful management of wetlands that support current geese populations, and close monitoring of populations will ensure continued sustainable harvest of geese under global change. Given the cultural and biological significance of this species and the north Australian wetlands that support it, this is a conservation resource we cannot afford to squander. / Thesis (Ph.D.) -- University of Adelaide, School of Earth and Environmental Science, 2009

Over the past decades, quantitative methods linking theory and observation became increasingly important in many areas of life science. Subsequently, a large number of mathematical and computational models has been developed. The BioModels database alone lists more than 140,000 Systems Biology Markup Language (SBML) models. However, while the exchange within specific model classes has been supported by standardisation and database efforts, the generic application and especially the re-use of models is still limited by practical issues such as easy and straight forward model execution. MAGPIE, a Modeling and Analysis Generic Platform with Integrated Evaluation, closes this gap by providing a software platform for both, publishing and executing computational models without restrictions on the programming language, thereby combining a maximum on flexibility for programmers with easy handling for non-technical users. MAGPIE goes beyond classical SBML platforms by including all models, independent of the underlying programming language, ranging from simple script models to complex data integration and computations. We demonstrate the versatility of MAGPIE using four prototypic example cases. We also outline the potential of MAGPIE to improve transparency and reproducibility of computational models in life sciences. A demo server is available at magpie.imb.medizin.tu-dresden.de.

Over the past decades, quantitative methods linking theory and observation became increasingly important in many areas of life science. Subsequently, a large number of mathematical and computational models has been developed. The BioModels database alone lists more than 140,000 Systems Biology Markup Language (SBML) models. However, while the exchange within specific model classes has been supported by standardisation and database efforts, the generic application and especially the re-use of models is still limited by practical issues such as easy and straight forward model execution. MAGPIE, a Modeling and Analysis Generic Platform with Integrated Evaluation, closes this gap by providing a software platform for both, publishing and executing computational models without restrictions on the programming language, thereby combining a maximum on flexibility for programmers with easy handling for non-technical users. MAGPIE goes beyond classical SBML platforms by including all models, independent of the underlying programming language, ranging from simple script models to complex data integration and computations. We demonstrate the versatility of MAGPIE using four prototypic example cases. We also outline the potential of MAGPIE to improve transparency and reproducibility of computational models in life sciences. A demo server is available at magpie.imb.medizin.tu-dresden.de.

Cities are concentrations of diverse populations that undergo continual transformation over time. This thesis deals with the question, how does the individual make place in a constantly changing environment? The entry point for this study was looking at neglected places in urban environments. I looked specifically at the Don River Valley in Toronto, Ontario and how it has developed as an open-ended and complex system. The site research is presented through a series of stories describing specific events or places in the Don Valley that have taken place over the past 200 years. This thesis offers a mongrel approach to design for a site within the Don Valley. “The Mongrel Approach” is an opportunistic way of building that is committed to survival and open as to how this can be achieved. The design proposes a series of intimate yet public infrastructural devices; a toilet, water fountain, shelter and bridge that are presented in a set of hand drawings as well as through an “Explanatory Tale.” A magpie narrates this short story, which is part true, part fiction and part wishful thinking. As the earth’s population becomes more urban than rural and increasingly mobile, contemporary cities are becoming home to a diverse range of individuals with complex and layered identities. The Mongrel Approach offers a way of building that can handle difference and contradiction and accommodate incongruous or inharmonious parts. It positions the designer as a conjurer or first mover. This thesis proposes Mongrel buildings that respond to change by transforming slowly and incrementally over time with the involvement of multiple authors; but at each moment, a register of time and human ritual.

Cities are concentrations of diverse populations that undergo continual transformation over time. This thesis deals with the question, how does the individual make place in a constantly changing environment? The entry point for this study was looking at neglected places in urban environments. I looked specifically at the Don River Valley in Toronto, Ontario and how it has developed as an open-ended and complex system. The site research is presented through a series of stories describing specific events or places in the Don Valley that have taken place over the past 200 years. This thesis offers a mongrel approach to design for a site within the Don Valley. “The Mongrel Approach” is an opportunistic way of building that is committed to survival and open as to how this can be achieved. The design proposes a series of intimate yet public infrastructural devices; a toilet, water fountain, shelter and bridge that are presented in a set of hand drawings as well as through an “Explanatory Tale.” A magpie narrates this short story, which is part true, part fiction and part wishful thinking. As the earth’s population becomes more urban than rural and increasingly mobile, contemporary cities are becoming home to a diverse range of individuals with complex and layered identities. The Mongrel Approach offers a way of building that can handle difference and contradiction and accommodate incongruous or inharmonious parts. It positions the designer as a conjurer or first mover. This thesis proposes Mongrel buildings that respond to change by transforming slowly and incrementally over time with the involvement of multiple authors; but at each moment, a register of time and human ritual.

This thesis describes data sharing between information systems based on ontologies. In the first chapter shows up the term ontology and used terminology. Then this thesis analyses used basic methods, onthological languages and partially describes semantic web. In the third chapter are write out  utilities and plugins which are used for working with ontologies. The other chapters describe created ontology which are useful for car-selling. Especially ontology with cars, sellers and addresses . At the end of the thesis is explained suggested instrument to transfer existing XML to recording advertising in OWL language.

This study examined the influence of winter social behavior, particularly dominance relationships, on the subsequent nesting habitat selection and reproductive success of Black-billed Magpies (Pica ~ hudsonia) on 2 areas in northern Utah. Hierarchical cluster analysis ordinated the habitats available to breeding birds and Chi-square and Bonferoni-z statistics were used to determine those habitat types the magpies seemed to prefer. Social status was determined by observing color-banded birds engaged in agonistic encounters at winter bait stations. Social dominance was evaluated by% dyads won, not by total % victories. Relationships between winter social status of magpies and their subsequent breeding habitat use and reproductive performance was tested by Kenda 11 's Tau. Winter foraging flocks were comprised primarily of juvenile (1st year) birds while adults tended to remain as isolates or in pairs. Social status within flocks was correlated with age and sex; males dominated females and juvenile males dominated adult males. This was caused by differences in the social organization of adults and juveniles which created asymmetric views of winter food resources between male age classes. Breeding territories were densely packed in all habitats with a mean size of 0.5 ha. Date of clutch initiation was significantly correlated with clutch size and number of fledglings, with earlier nests more successful. Juveniles occupied marginal habitats and produced fewer offspring than adults. Within a dominance hierarchy of juvenile males, no significant differences in reproductive variables were detected except date of clutch initiation and weight of nestlings. Nestlings of dominant parents fledged earlier and were heavier than those of subordinates, which should increase post-fledging survival. This study has documented, for the first time in a free-living population, relationships between characteristics of nestlings and their future dominance status. Two characteristics, fledging date and rank (by weight) in the brood, were correlated with future winter dominance of juvenile males. The dominance status of male magpies is associated with many factors related to relative fitness, with hereditary components moderated by environmental and social factors.