• Refine Query
  • Source
  • Publication year
  • to
  • Language
  • 23
  • 8
  • 6
  • 2
  • 1
  • 1
  • Tagged with
  • 47
  • 17
  • 14
  • 8
  • 7
  • 6
  • 6
  • 5
  • 5
  • 5
  • 5
  • 5
  • 5
  • 4
  • 4
  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
11

Estudo calorimétrico comparativo do efeito da aplicação de herbicidas na atividade microbiana em diferentes solos / Calorimetric study of the comparative effect of herbicides on the microbial activity in different soils

Curti, Gabriel Jeronymo, 1984- 12 May 2014 (has links)
Orientador: José de Alencar Simoni / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Química / Made available in DSpace on 2018-08-26T20:46:57Z (GMT). No. of bitstreams: 1 Curti_GabrielJeronymo_D.pdf: 2740453 bytes, checksum: e587cb4af6da5b69a349e04e62b2a63c (MD5) Previous issue date: 2014 / Resumo: Sabe-se que na agricultura a qualidade de um solo é dependente do tipo de manejo. No presente trabalho foi aplicada a microcalorimetria isotérmica para se investigar a influência do herbicida atrazina na atividade microbiana de um solo envelhecido de mata nativa, mantido a aproximadamente 4 °C, durante três anos. Além da utilização da microcalorimetria isotérmica, foram realizadas as análises de DSC e TG com a finalidade de se avaliar a quantidade de matéria orgânica presente no solo estudado, cujo valor quantificado foi de (3,5 ± 0,2)% g/g. Também foi realizado o cálculo da humidade do solo e as análises elementares [CHN e EDS (Energy Dispersive X-Ray Detector) acoplado ao MEV (Microscópio Eletrônico de Varredura)]. As amostras de solo utilizadas na análise microcalorimétrica foram previamente incubadas com acetonitrila e com soluções de atrazina em acetonitrila nas concentrações de 1000 e 2000 ppm, durante aproximadamente 48 horas. Em seguida, foi descoberto com o emprego da microcalorimetria isotérmica que a acetonitrila ainda permanecia no solo após o período de incubação, além do fato de que o efeito da atrazina sobre os microrganismos do solo não era detectável, uma vez que os valores para o calor gerado durante a incubação com aquele solvente e com as soluções de atrazina em acetonitrila nas concentrações de 1000 e 2000 ppm, respectivamente, eram iguais a: (-12,8 ± 0,8), (-12,9 ± 0,9) e (-13,5 ± 0,6) J, enquanto que os valores da constante do crescimento microbiano eram iguais a: (5,9 ± 1,4), (6,8 ± 1,6) e 6,37 min-1. A análise microbiológica também indicou que a atrazina não estaria influenciando os microrganismos, diferentemente do caso da acetonitrila, a qual foi responsável por uma redução nas quantidades dos microrganismos. No presente trabalho também foi investigada a influência do herbicida nicosulfuron sobre as atividades microbianas nos solos de mata nativa ou floresta e de cultivos do milho e do café. Foram empregadas as mesmas técnicas analíticas como no caso da atrazina, sendo que para se estudar o nicosulfuron foram investigadas as seguintes condições de incubação (durante 48 h) para cada tipo de solo: aplicação de acetonitrila, aplicação de uma solução de nicosulfuron em acetonitrila com uma concentração igual a 64 ppm e aplicação de uma solução com a mesma natureza, mas com uma concentração igual a 120 ppm. Os resultados indicaram que o solo de floresta era o mais rico em termos de matéria orgânica (4,0 ± 0,1)%, enquanto que o solo de cultivo do café era o mais rico em termos de humidade (21 %). Preliminarmente, as análises térmicas realizadas com o auxílio da microcalorimetria isotérmica indicaram que a acetonitrila foi novamente a espécie mais biodegradada, ao passo que nos casos das condições em que havia adição de água ao invés da solução de glicose pôde ser concluído que o solo cultivado com café foi aquele que mais sofreu influência do nicosulfuron do que nos casos dos outros solos, uma vez que para o valor de concentração mais elevado, i.e., 120 ppm, o valor da energia dissipada (calor; Q) foi estatisticamente superior (-6,6±0,3)J do que no caso da solução da mesma natureza com concentração igual a 64 ppm (-4,8±0,9)J. Para os solos de floresta ou mata nativa e de cultivo do milho o nicosulfuron não exerceu influência detectável. As análises microbiológicas para os solos de cultivo do café e do milho não indicam que ocorram diferenças estatisticamente significativas para algumas das condições estudadas, de tal maneira que para o estudo com o nicosulfuron podemos concluir que a microcalorimetria isotérmica se mostra uma técnica promissora que pode permitir estudos com xenobióticos como os pesticidas / Abstract: It is known in agriculture that soil quality does dependent on the kind of soil management. In the present work was applied the isothermal microcalorimetry to investigate the influence of the herbicide atrazine on the microbial activity of a forest soil that was aged (resting along 3 years under about 4°C). Besides the application of isothermal microcalorimetry it were performed the DSC and TG analyses with the purpose to evaluated the amount of organic matter present in the soil whose value was equal to (3.5±0.2) % to the studied soil. It were also performed the calculation of humidity in the soil and the elemental analyses [CHN and EDS (Energy Dispersive X-Ray Detector) coupled to SEM (Scanning Electron Microscopy)]. The soil samples used for the microcalorimetric analysis were previously incubated with acetonitrile and atrazine solutions in acetonitrile (1000 ppm and 2000 ppm), during approximately 48 hours. Afterwards, with the aid of the Isothermal Microcalorimetry it was discovered that actually the acetonitrile was remaining in the soil, even after the incubation period and that the effect of atrazine on the soil microorganisms was undetectable, once the heat generated for the incubation with acetonitrile and with atrazine solutions in acetonitrile of 1000 and 2000 ppm were equal respectively to: (-12.8 ± 0.8); (-12.9 ± 0.9) and (-13.5 ± 0.6) J, whilst that the values of the microbial growth constant were equal to: (5.9±1.4); (6.8±1.6) and 6.37 min-1. The microbiological analysis also indicated that the atrazine was not influencing the microorganisms, differently for the case of acetonitrile that was responsible for a decrease on the amounts of them. It was also investigated in that work the influence of the herbicide nicosulfuron on the microbial activities of soils under forest, and under maize and coffe tree crops. The same kind of analyses were performed as for the case of atrazine, but the investigations occured after a previous period of incubation along 48 h, and the conditions evaluated were: application of acetonitrile, application of nicosulfuron solution in acetonitrile with concentration equal to 64 ppm and application of a solution with the same nature but with concentration equal to 120 ppm. The results indicated that the forest soil was the richest one in terms of organic matter ( 4.0 ± 0.1) % , whilst the soil that lies under a coffe tree crop was the richest one in terms of humidity (21 % ). The thermal analyses with the aid of the Isothermal Microcalorimetry indicated preliminary that again acetonitrile was biodegradated mostly. However, for the soil tilled under coffe tree crop, considering the same conditions discussed previously for nicosulfuron but with the addition of deionized water after 48 h, the microbial activity was more stimulated by the nicosulfuron than respect to the other conditions, once with the solution of nicosulfuron with the highest concentration, i. e., 120 ppm, the value for the heat dissipated (Q) was statistically higher (-6.6±0.3) than for the concentration equal to 64 ppm (- 4.8 ± 0.9), while that in the forest soil and for the soil tilled with maize crop its influence was undetectable. The microbiological analysis for the forest soil and for the soil under maize crop shown that there are no differences that are statistically significant for some conditions studied, in such a way that for the study with nicosulfuron we can conclude that the Isothermal Microcalorimetry shows itself a promising technique that can allow studies with xenobiotics as the pesticides / Doutorado / Físico-Química / Doutor em Ciências
12

Assessment of Low-Dose Radiotoxicity in Microorganisms and Higher Organisms

Obeid, Muhammad Hassan 11 January 2016 (has links)
This work was dedicated to quantify and distinguish the radio- and chemitoxic effects of environmentally relevant low doses of uranium on the metabolism of microorganisms and multicellular organisms by a modern and highly sensitive microcalorimetry. In such low-dose regime, lethality is low or absent. Therefore, quantitative assays based on survival curves cannot be employed, particularly for multicellular organisms. Even in the case of microbial growth, where individual cells may be killed by particle radiation, classical toxicity assessments based on colony counting are not only extremely time-consuming but also highly error-prone. Therefore, measuring the metabolic activity of the organism under such kinds of conditions would give an extremely valuable quantitative measure of viability that is based on life cell monitoring, rather than determining lethality at higher doses and extrapolating it to the low dose regime. The basic concept is simple as it relies on the metabolic heat produced by an organism during development, growth or replication as an inevitable byproduct of all biochemical processes. A metabolic effect in this concept is defined as a change in heat production over time in the presence of a stressor, such as a heavy metal. This approach appeared to be particular versatile for the low dose regime. Thus, the thesis attempted in this case to measure the enthalpy production of a bacterial population as a whole to derive novel toxicity concepts. In the following chapters, an introduction about the properties of ionizing radiation will be briefly presented, in addition to a review about the isothermal calorimetry and its application in studying the bacterial growth. Later in chapter 2, the effect of uranium on the metabolic activity of three different bacterial strains isolated form a uranium mining waste pile together with a reference strain that is genetically related to them will be investigated. Due to the lack of published dedicated calibration techniques for the interpretation of heat production of bacterial cells under the conditions of calorimetric recordings, additional experiments, thorough investigations of the effects of experimental conditions, have been carried out in order to guide the interpretation of calorimetric results. In chapter 3, the differentiation between chemi- and radiotoxicity of uranium has been addressed by isotope exchange, which was a key effort in this thesis as it opens new experimental approaches in radioecology. In chapter 4, through investigating the role of the tripeptide glutathione (GSH) in detoxifying uranium, it will be shown to which degree the intrinsically unspecific signal provided by metabolic heat can be related to highly specific metabolic pathways of an organism, when combined with genetic engineering. The demonstration of gaining molecule-specific information by life metabolic monitoring was another experimental challenge of this thesis and provides proof of principle that can be extended to many organisms. Finally in chapter 5, an attempt has been undertaken to establish a minimal food chain, in order to study the effects of the exposure of a multicellular organism to uranium through its diet.
13

Thermodynamics and Mass Transport of Biomolecule Adsorption onto Chromatographic Media

Desch, Rebecca J. January 2013 (has links)
No description available.
14

DNA Binding Mechanisms and Serum Stabilization of Polymeric Nucleic Acid Delivery Vectors

Prevette, Lisa E. 22 April 2008 (has links)
No description available.
15

Determination of Surface Free Energies and Aspect Ratio of Talc

Lobato, Emilio Marcus de Castro 23 November 2004 (has links)
Microcalorimetric measurements and contact angle measurements were conducted to assess the surface chemistry of the mineral talc. The contact angles were performed on both flat and powdered samples and the results were used to determine the surface free energy components and parameters (SFEC) using the acid-base theory for solids, according to the van Oss-Chaudhury-Good approach. It was found that the surface hydrophobicity of talc increases with decreasing particle size up to a limit after which hydrophilicity (polarity) increases. The increase in hydrophobicity was attributed to the increase of the delamination of the lamellar talc particles. Delamination is a comminution mechanism that preferentially exposes talc's hydrophobic basal planes, while fracture is another mechanism that breaks the lamellae, rupturing covalent bonds thus exposing more hydrophilic edge surfaces. The decrease in hydrophobicity, beyond a given particle size, could be related to the prevail of fracture over delamination during grinding which generated more hydrophilic edge surfaces. The flow microcalorymetry combined with thin layer wicking allowed the separate estimation of the SFEC at the basal plane and edge surfaces of talc. The results suggested that the basal surface of talc is monopolar basic, while the edge surface is monopolar acidic, which are in agreement with the crystal structure of the mineral. The combination of two particle size distribution techniques, which are based on different physical principles, permitted the quantitative determination of the aspect ratio of highly anisometric particles, such as talc. The same trend obtained using flow microcalorimetry was observed for the evolution of the aspect ratio as a function of particle fineness, i.e. the fracture prevails over delamination after achieving a maximum aspect ratio value of about 35. The agreement between two distinct methods was considered rather encouraging. / Master of Science
16

Conception et développement d'un microcalorimètre pour l'étude de l'oxydation d'une huile végétale / Conception and development of a calorimetric thermal analysis device for the study of vegetal oil oxidation

Garcia Darras, Carolina 10 May 2012 (has links)
L’oxydation des lipides est un phénomène complexe qui génère de nombreux produits qu’il est nécessaire de caractériser de manière précise afin de prévenir leur apparition. Parmi les méthodes pour analyser les produits d’oxydation, l’analyse thermique différentielle, basée sur la mesure différentielle du flux de chaleur dissipé au cours des réactions d’oxydation, est intéressante car elle n’utilise pas de solvant organique. De plus, elle peut être corrélée à l’apparition de produits primaires ou secondaires d’oxydation. Dans ce contexte, nous avons conçu et développé un microcalorimètre basé sur le principe de l’analyse thermique différentielle mais plus adaptable dans la mesure où il permet l’analyse de plusieurs échantillons simultanément dans des coupelles d’analyse de dimensions variables (variation du rapport surface/volume en relation avec les phénomène de diffusion de l’oxygène). Pour le développement du microcalorimètre, les thermopiles sont utilisées dans la configuration adiabatique. Le système de mesure des flux est stable et possède une sensibilité élevée. La validation de la méthode est réalisée par effet Joule et par comparaison des points de fusion de paraffines en calorimétrie différentielle classique. La modélisation des réactions d’oxydation est réalisée afin de mettre en évidence l’influence de l’oxygène sur les cinétiques. Pour une huile riche en acides gras polyinsaturés (huile de cameline), l’enthalpie de la réaction d’oxydation (en début de cinétique) obtenue en condition isotherme (100°C) est corrélée avec la mesure des diènes conjugués (produits primaires d’oxydation). Dans l’ensemble, le microcalorimètre développé est suffisamment sensible et fiable pour mesurer les enthalpies de réactions d’oxydation des lipides des huiles alimentaires. / Lipid oxidation results of many reactions generating numerous oxidation products that are worth characterizing in fats and oils. Among the analysis methods available, differential scanning calorimetry, based on the differential measurement of heat flux dissipated during the oxidation reactions, is convenient because it avoids the use of organic solvents. In this context, we have conceived and developed a microcalorimeter that allows the analysis of up to 5 samples simultaneously, in containers of variable sizes (allowing to vary the surface/volume ratio). For the conception of the microcalorimeter, the thermopiles are used in adiabatic configuration. The system is very stable and allowed flux measurement with a high sensitivity. The validation of the method is performed by Joule effect and by comparison of melting points of paraffins with classical differential scanning calorimetry. The modelization of the oxidation reaction is performed to point out the influence of oxygen on the kinetics. For a polyunsaturated oil (cameline oil), the enthalpy values obtained, at the beginning of the oxidation process, under isothermal condition (100°C) are correlated with the diene conjugated hydroperoxide amount. On the whole, the developed device provided an adaptable, sensitive, solvent-free and low cost method for the measurement of lipid oxidation, particularly suitable for the fast screening of a large set of samples.
17

Investigação da estabilidade de fases da zircônia-escândia / Investigation of phase stability in the scandia-zirconia

Robson Lopes Grosso 25 May 2016 (has links)
Nesse trabalho foi proposto investigar a estabilidade de fases do sistema zircônia-escândia (ScSZ) por meio do estudo termodinâmico de nanopartículas, na faixa de 0 a 20% em mol de Sc2O3, e a partir da introdução de um segundo aditivo (Dy2O3 e Nb2O5) ao ZrO2 contendo 10% em mol de Sc2O3 (10ScSZ). A estabilidade de fases do ScSZ foi avaliada com base em dados termodinâmicos determinados pelas técnicas de microcalorimetria de adsorção de água e calorimetria de dissolução à alta temperatura. As soluções sólidas foram sintetizadas pelo método de coprecipitação de hidróxidos. Dados termodinâmicos foram determinados para as formas polimórficas encontradas (monoclínica, tetragonal, cúbica, romboédrica β e γ) por difração de raios X no ScSZ. Esse trabalho resultou no diagrama de fases em nanoescala de tamanho de partícula-composição. Os efeitos produzidos pela introdução de aditivos na matriz de 10ScSZ foram investigados visando obter a possível estabilização da estrutura cúbica (c) e a supressão da transformação de fase c-β, característica do sistema binário. As composições foram sintetizadas por coprecipitação de hidróxidos e por reações em estado sólido para fins comparativos. Os materiais foram sinterizados convencionalmente e por sinterização assistida por campo elétrico. A estabilização completa da fase cúbica ocorreu a partir de teores molares de 1% de Dy2O3 e 0,5% de Nb2O5. O menor teor de Nb2O5 necessário para a estabilização da fase foi atribuído à provável formação da fase líquida durante a sinterização e ao menor tamanho do íon Nb5+. Os resultados de difratometria de raios X em alta temperatura e análise térmica mostraram que houve supressão da transição c-β. As amostras contendo 0,5% mol de Nb2O5 apresentaram valores de condutividade iônica similares aos do 10ScSZ sem aditivos em uma ampla faixa de temperatura com elevada estabilidade em um período de 170 h a 600 °C. / In this work, the phase stability of scandia-zirconia (ScSZ) system was investigated by the thermodynamic study of nanoparticles, within the range of 0 to 20 mol% Sc2O3, and by codoping of ZrO2-10 mol% Sc2O3 (10ScSZ) with Dy2O3 and Nb2O5. The phase stability of ScSZ was evaluated based on thermodynamic data collected by water adsorption microcalorimetry and high temperature oxide melt solution. Nanostructured zirconia-scandia solid solutions were synthesized by coprecipitaion method. Thermodynamic data were determined for ScSZ polymorphs (monoclinic, tetragonal, cubic, rhombohedral β and γ) found by X-ray diffraction. This systemic work resulted in an unprecedented phase diagram at the nanoscale of particle size-composition. The effects of additives on 10ScSZ were investigated aiming to stabilize the cubic (c) structure at room temperature and to suppress the characteristic cubic-rhombohedral β phase transformation. Compositions were prepared by coprecipitation and solid state reaction. Materials were sintered by conventional and spark plasma sintering. Full stabilization of the cubic phase was attained by 1 mol% Dy2O3 and 0.5 mol% Nb2O5 additions. The smallest Nb2O5 content required for cubic phase stabilization was attributed to liquid phase formation during sintering and to small ionic radius of Nb5+. Results of high temperature X-ray diffraction and thermal analysis show suppression of the c-β transformation. Samples containing 0.5 mol% Nb2O5 show total ionic conductivity similar to 10ScSZ without additives within a broad temperature range with high stability during 170 h at 600 °C.
18

Investigação da estabilidade de fases da zircônia-escândia / Investigation of phase stability in the scandia-zirconia

Grosso, Robson Lopes 25 May 2016 (has links)
Nesse trabalho foi proposto investigar a estabilidade de fases do sistema zircônia-escândia (ScSZ) por meio do estudo termodinâmico de nanopartículas, na faixa de 0 a 20% em mol de Sc2O3, e a partir da introdução de um segundo aditivo (Dy2O3 e Nb2O5) ao ZrO2 contendo 10% em mol de Sc2O3 (10ScSZ). A estabilidade de fases do ScSZ foi avaliada com base em dados termodinâmicos determinados pelas técnicas de microcalorimetria de adsorção de água e calorimetria de dissolução à alta temperatura. As soluções sólidas foram sintetizadas pelo método de coprecipitação de hidróxidos. Dados termodinâmicos foram determinados para as formas polimórficas encontradas (monoclínica, tetragonal, cúbica, romboédrica β e γ) por difração de raios X no ScSZ. Esse trabalho resultou no diagrama de fases em nanoescala de tamanho de partícula-composição. Os efeitos produzidos pela introdução de aditivos na matriz de 10ScSZ foram investigados visando obter a possível estabilização da estrutura cúbica (c) e a supressão da transformação de fase c-β, característica do sistema binário. As composições foram sintetizadas por coprecipitação de hidróxidos e por reações em estado sólido para fins comparativos. Os materiais foram sinterizados convencionalmente e por sinterização assistida por campo elétrico. A estabilização completa da fase cúbica ocorreu a partir de teores molares de 1% de Dy2O3 e 0,5% de Nb2O5. O menor teor de Nb2O5 necessário para a estabilização da fase foi atribuído à provável formação da fase líquida durante a sinterização e ao menor tamanho do íon Nb5+. Os resultados de difratometria de raios X em alta temperatura e análise térmica mostraram que houve supressão da transição c-β. As amostras contendo 0,5% mol de Nb2O5 apresentaram valores de condutividade iônica similares aos do 10ScSZ sem aditivos em uma ampla faixa de temperatura com elevada estabilidade em um período de 170 h a 600 °C. / In this work, the phase stability of scandia-zirconia (ScSZ) system was investigated by the thermodynamic study of nanoparticles, within the range of 0 to 20 mol% Sc2O3, and by codoping of ZrO2-10 mol% Sc2O3 (10ScSZ) with Dy2O3 and Nb2O5. The phase stability of ScSZ was evaluated based on thermodynamic data collected by water adsorption microcalorimetry and high temperature oxide melt solution. Nanostructured zirconia-scandia solid solutions were synthesized by coprecipitaion method. Thermodynamic data were determined for ScSZ polymorphs (monoclinic, tetragonal, cubic, rhombohedral β and γ) found by X-ray diffraction. This systemic work resulted in an unprecedented phase diagram at the nanoscale of particle size-composition. The effects of additives on 10ScSZ were investigated aiming to stabilize the cubic (c) structure at room temperature and to suppress the characteristic cubic-rhombohedral β phase transformation. Compositions were prepared by coprecipitation and solid state reaction. Materials were sintered by conventional and spark plasma sintering. Full stabilization of the cubic phase was attained by 1 mol% Dy2O3 and 0.5 mol% Nb2O5 additions. The smallest Nb2O5 content required for cubic phase stabilization was attributed to liquid phase formation during sintering and to small ionic radius of Nb5+. Results of high temperature X-ray diffraction and thermal analysis show suppression of the c-β transformation. Samples containing 0.5 mol% Nb2O5 show total ionic conductivity similar to 10ScSZ without additives within a broad temperature range with high stability during 170 h at 600 °C.
19

Caractérisation biochimique et structurale d'une lectine de graine de Platypodium elegans Vogel / Biochimical and Structural caracterization of a lectin from Platypodium elegans Vogel seeds

Leite, Raquel 06 December 2011 (has links)
De la reconnaissance protéine-glucides. Une activité lectine avec une spécificité mannose/glucose a été détectée dans les graines de Platypodium elegans, une légumineuse de la sous-tribu Dalbergiae. Le gène de la lectine PELa a été cloné. Son produit est une protéine de 261 acides aminés appartenant à la famille des lectines de légumineuses et présentant des similarités avec l'agglutinine de Pterocarpus angolensis (PAL). La lectine recombinante a été exprimée dans E. coli et renaturée à partir des corps d'inclusion. L'analyse de la spécificité par Glycan Array montre une préférence très rare pour des N-glycanes de type complexe avec des branches disymmétriques. Une branche courte composée d'un résidu de mannose est préférée sur le bras 1-6 des N-glycanes, tandis que l'extension par les résidus GlcNAc et Gal et favorable sur le bras 1-3. Les affinités ont été mesurées par microcalorimétrie de titration en utilisant des heptasaccharides liés à une asparagine et obtenus par une méthode semi-enzymatique. Une très forte affinité de 5 uM a été obtenue pour deux ligands symétriques et disymmétriques. Les structures cristallographiques de PELa complexé avec le trimannose branché et l'heptasaccharide-Asn symétrique de type complexe ont été résolues respectivement à 2,1 et 1,65 Å de résolution. La lectine adopte l'organisation dimérique canonique des lectines de légumineuses. Le trimannose ponte les sites de liaison de deux dimères voisins, résultant en la formation de chaînes infinies dans le cristal. L'heptasaccharide-Asn se lie par le mannose du bras 1-6 dans le site principal de liaison et de nombreux contacts supplémentaires sont établis avec les autres résidus glucidiques. Le GlcNAc du bras 1-3 interagit avec la surface de la protéine dans une conformation contrainte qui peut expliquer la plus grande affinité que l'on observe sur les puces pour les oligosaccharides avec des bras 1-3 courts qui ne contiennent pas ce monosaccharide. / Lectin activity with specificity for mannose and glucose has been detected in the seed of Platypodium elegans, a legume from the Dalbergiae tribe. The gene of the lectin PELa has been cloned and the resulting 261 amino acid protein belongs to the legume lectin family with similarity with Pterocarpus angolensis agglutinin (PAL) from the same tribe. The recombinant lectin has been expressed in E. coli and refolded from inclusion bodies. Analysis of specificity by Glycan Array evidenced a very unusual preference for complex type N-glycans with asymmetrical branches. A short branch consisting of one mannose residue is preferred on the 6- arm of the N-glycan, while extension by GlcNAc, Gal and NeuAc are favorable on the 3-arm. Affinities have been obtained by microcalorimetry using symmetrical and asymmetrical Asn- linked heptasaccharide prepared by semi-enzymatic method. Strong affinity of 5 µM was obtained for both ligands. Crystal structures of PELa complexed with branched trimannose and symmetrical complex type Asn-linked heptasaccharide have been solved at 2.1 and 1.65 Å resolution respectively. The lectin adopts the canonical dimeric organization of legume lectins. The trimannose bridges the binding sites of two neighbouring dimers, resulting in the formation of infinite chains in the crystal. The Asn-linked heptasaccharide binds with the 6-arm in the primary binding site and extensive additional contacts on both arms. The GlcNAc on the 3-arm is bound in a constrained conformation that may rationalize the higher affinity that is observed on chips for oligosaccharide with shorter 3-arm that do not present this monosaccharide.
20

Estabilidade térmica da hemoglobina extracelular gigante de Glossoscolex paulistus (HbGp): estudos dos efeitos do pH do meio e do estado de oxidação do ferro por microcalorimetria diferencial de varredura (DSC), espectroscopia de absorção óptica e dicroísmo circular (CD) / Thermal stability of the giant extracellular hemoglobin of Glossoscolex paulistus (HbGp): studies of the effects of the mediam pH iron oxidation state by differential of scanning microcalorimetry (DSC), optical absorption and circular dichroism (CD) spectroscopies

Carvalho, José Wilson Pires 11 August 2010 (has links)
A estabilidade térmica em função do pH para três formas da hemoglobina extracelular gigante do anelídeo Glossoscolex paulistus (HbGp), monitorada atraves de DSC, CD e absorção óptica, e estudada no presente trabalho. Estes estudos possibilitaram a determinação de parâmetros importantes do processo de desnaturação e dissociação da proteína oligomerica em pH ácido, neutro e alcalino. A HbGp se mostrou mais estável no pH ácido do que em pH neutro e alcalino. No meio alcalino a HbGp sofre dissociação oligomérica gerando subunidades tais como o dodecâmero, o trímero e o monômero. Além disso, as técnicas de DSC, dicroísmo circular (CD) e absorção óptica permitiram o monitoramento da desnaturação da estrutura protéica global, da estrutura secundária e do centro ativo da HbGp, em função da temperatura. Por DSC foi determinado que o mecanismo do processo de desnaturação térmica da HbGp é irreversível. As variações de entalpia calorimétrica, ΔHcal, e de van Hoff, ΔHvH, nas formas oxi-, meta- e cianometa-HbGp são bem distintas, em todos os pHs estudados, indicando que o processo de desnaturação é bastante complexo, sugerindo que o pico de transição deve ser composto por varias transições. A ordem de estabilidade apresentada pela HbGp em termos dos valores de temperatura de transição (Tm) foi a seguinte: cianometa- > oxi- > meta- no intervalo de pH 5,0 a 8,0. Os valores de ΔHcal no pH 7,0 para a oxi-HbGp, meta-HbGp e cianometa-HbGp foram de 25 ± 4, 20 ± 2 e 56 ± 4 MJ/mol, respectivamente. Os valores de energia de ativação (Ea) obtidos no pH 7,0 para a oxi- e cianometa-HbGp foram de 673 ± 99 e 780 ± 105 KJ/mol, e no pH 8,0 de 897 ± 106 e 850 ± 201 KJ/mol, respectivamente. Esses valores de energia de ativação são condizentes com os reportados na literatura para outras hemoglobinas. Nos estudos realizados por CD a oxi-HbGp forma hemicromo no pH 6,0 e 7,0, em temperaturas superiores a 40 °C, e se dissocia em meio alcalino. A oxi-HbGp apresenta temperatura crítica (Tc) nas regiões das hélices-α e do grupo heme praticamente idêntica nos vários pHs estudados. A cianometa-HbGp possui maior quantidade de estrutura secundária do que a oxi-HbGp, e maiores valores de temperatura crítica (Tc), sendo bem mais estável que a oxi-HbGp, assim como o observado por DSC. Por absorção óptica o comportamento térmico da HbGp é similar ao do CD, sendo observado ainda, além da formação de hemicromo, a presença de espécies pentacoordenadas no pH neutro e alcalino. / The thermal stability as a function of the pH, for three forms of the extracellular giant hemoglobin of the annelid Glossoscolex paulistus (HbGp) was monitored by DSC, CD and optical absorption in the present work. These studies allowed the determination of important parameters characterizing the denaturation and dissociation at acid, neutral and alkaline pH values. HbGp was shown to be more stable in acid pH as compared to neutral and alkaline pH values. In alkaline medium, HbGp presents oligomeric dissociation generating smaller subunits such as the dodecamer, the trimer and the monomer. Besides that, the techniques of the DSC, circular dichroism (CD) and optical absorption spectroscopy allowed to monitor, respectively, the denaturation of the global protein structure, of the secondary structure and of the active center of the hemoglobin, as a function of the temperature. By DSC it was determined that the mechanism of the thermal denaturation of the HbGp is irreversible. The variations of calorimetric and van Hoff enthalpies, in the oxy- and cyanomet-HbGp forms, are quite different, for all studied pH values, indicating that the process of denaturation is complex, characterized by a transition peak composed by several contributions. The order of stability presented by the HbGp in terms of the transition temperature values (Tm) was the following: cyanomet-> oxy- for pH from 5.0 to 8.0. The values of ΔHcal at pH 7.0 for the oxy-HbGp, met-HbGp and cianomet-HbGp were 25 ± 4, 20 ± 2 and 56 ± 4 MJ/mol, respectively. The activation energy values (Ea) obtained at pH 7.0 for the oxy- and cyanomet-HbGp were 673 ± 99 and 780 ± 105 KJ/mol, and at pH 8.0 they were 897 ± 106 and 850 ± 201 KJ/mol, respectively. Those energy values are consistent with data reported in the literature for other hemoglobins. In the studies carried out by CD for oxy-HbGp formation of hemichrome was observed at pH 6.0 and 7.0, at temperatures above 40 °C. In alkaline medium the oligomeric dissociation is observed. Oxy-HbGp presents critical temperatures (Tc), which are practically identical in the spectral regions of the polypeptide and of the heme groups for all studied pH values. The cyanomet-HbGp own larger quantity of secondary structure than oxy-HbGp, and higher values of critical temperatures (Tc), being more stable than oxy-HbGp, in agreemente with DSC data. Optical absorption spectroscopy shows thermal behavior of HbGp similar to that observed by CD. Besides the formation of the hemichrome species upon heating, the presence of penta-coordinate species at neutral and alkaline pH values was observed.

Page generated in 0.1307 seconds