The aim of this diploma thesis was study of the isolation of polyhydroxyalkanoates using a commercial surfactant and selected biosurfactants, which were sophorolipids, coconut soap, lecithin, lauryl glucoside, coco glucoside and cocamidopropyl betaine. PHA was isolated from Schlegelella thermodepolymerans DSM 15344, where the amount of NaCl in the production medium was first optimized. The molecular weight of the isolated polymer was analyzed by SEC-MALS. The largest structural changes were recorded for coconut soap. Possible impurities in the isolated polymer were analyzed by infrared spectrometry (ATR-FTIR). The least protein contamination of the polymer was recorded with coconut soap. From the above biosurfactants, coconut soap, lauryl glucoside and coco glucoside were selected, because the highest purity of PHA was obtained. However, coconut soap had the greatest potential. The isolation temperature and surfactant concentration were optimized for selected biosurfactants. The best results were obtained at 90 °C and a concentration of 5 g/L. Furthermore, the versatility of the isolation method was tested using selected biosurfactants on various thermophilic microorganisms, which were Chelatococcus composti DSM 101465, Schlegelella thermodepolymerans DSM 15264, Tepidimonas taiwanensis LMG 22826 and Aneurinibacillus thermoaerophilus H1.

Polyhydroxyalkanoates (PHA) are microbial storage polyesters that represent a renewable and environmentally friendly alternative to petrochemical plastics. However, their production and use are severely disadvantaged by the high production cost. The use of extremophilic PHA producers is one of the ways to reduce the cost of PHA production. Extremophiles bring numerous advantages resulting from the high robustness of the process against microbial contamination. In this doctoral thesis, attention was focused on the study of PHA production using selected halophilic and thermophilic microorganisms. Representatives of the genus Halomonas were mainly from public collections of microorganisms. Two promising PHA producers on waste frying oil were identified, namely Halomonas hydrothermalis and Halomonas neptunia. Both strains achieved good PHA yields in flask experiments. With the addition of suitable structural precursors, they were also able to produce copolymers with interesting material properties. However, in the proposed thesis, the main emphasis was placed on the study of PHA production using thermophilic microorganisms. As a part of the work, the isolation of thermophilic PHA producers from various thermophilic consortia (active sludge, compost, etc.) was performed. During isolations experiments, an original isolation procedure was designed using changes in osmotic pressure, the so-called osmoselection. Dozens of promising thermophilic PHA producers were obtained thanks to this original approach. They were taxonomically classified using 16S rRNA and tested for production potential. The most promising PHA producer was the isolate which was classified as Aneurinibacillus sp. H1. This bacterium is able to utilize a variety of substrates, including waste glycerol, to produce PHA. Even more important is the capability of synthesizing copolymers with a high content of 4-hydroxybutyrate. The monomer composition of the PHA copolymer and thus the material properties of the prepared copolymer can be controlled by suitable adjustment of the cultivation conditions. The prepared copolymer P(3HB-co-4HB) has unique properties and the great application potential in numerous high-end applications, for example in the field of health care, food industry or cosmetics.

The diploma thesis evaluates the microbiological contamination of meat and background in the company of Jatky Bučovice. Numbers of the choosen microorganisms are weighted against the change of the season.

Abundance and diversity of microbial phototrophic communities (cyanobacteria and eukaryotic microalgae) were investigated at two localities in main mountain ranges of Ladakh (Tibetan Plateau and Eastern Karakoram), India. Samples were collected along a two representative altitudinal gradients at each locality (E Karkoram 4620 - 5100 m asl., Tibetan Plateau 5346 - 5833 m asl.) in alpine and subnival zones in the vicinity of cushion plant Thylacospermum caespitosum (Caryophyllaceae). At each altitude 6 soil samples were taken from below cushion and 6 samples from outside the cushion. The epifluorescent microscopy and DGGE-method were used to determine diversity and biomass of phototrophs in the studied soils. Physico-chemical analyses (pH, texture, organic matter, nitrogen, ammonia and phosphorus content, concentration of chlorophylls and carotenoids) were also performed on the samples. The effect of altitude, mountain ranges and T. caespitosum on the composition and biomass of phototrophs and physico-chemical parameters of soil was tested by multivariate redundancy analysis and variance partitioning procedure. This study shows that the semiarid and arid soil of high elevation in Ladakh Mts. is suitable place for the development of microbial phototrophic communities and is important part of the ecosystem. The...

Both during the ovogenesis and immediately after the laying is a bird egg exposed to strong pressure from the microorganisms which are able to penetrate the egg through eggshell pores and infect its inner structures. With regard to the proved negative effects on hatchability, viability and phenotype of offspring, a cascade of obstacles has evolved which are able to minimize the risk of bacterial infection. The deposition of antimicrobial components into the eggshell and the egg white is considered to be one of them. A whole group of egg white proteins belong to them, among which lysozyme and ovotransferrin, which are also partially deposited into the eggshell and cuticular layer of the eggshell, dominate with their antimicrobial effect. The implication of the newest studies is that the microbial protection of the egg can be also performed by the eggshell pigments - biliverdin and protoporphyrin, which protect the egg from being colonized by microorganisms with an increased UV light and regulation of conductivity and water vapour condensation on the egg surface. Even though the presence of these antimicrobial components in different structures of the egg has been proved, there is no known comparative study which addresses the relation between deposition of selected antimicrobial components into...

Microorganisms are considered to be a significant selective factor affecting bird's life strategies. The body cover, including feather, is occupied by a wide range of bacteria that are in their host in different interactions. Group of microorganisms degradate keratins of feather is still most studied and most species of birds have them in feather. This feather degrading bacteria can disrupt the wear and its function and thus cause great losses to its fitness. Therefore, it seems likely that these feathers degrading bacteria and microorganisms generally play a significant role in creating defence mechanisms against their negative effects. One of the most important defence mechanisms to protect feathers against the action of microorganisms is the deposition of melanin pigments. This diploma thesis deals with the analysis of the total bacterial load in feathers and its resistance against bacterial degradation in 47 species of birds trapped in afromontan areas of western Cameroon. The specific aim of the thesis was to determine differences in the total number of bacteria in plumage in species with different life strategies, especially feeding and reproductive strategies. At the same time, the phtilochronological analysis of the quality of the plumage was performed and in vitro experiments were tested...

The soil microbial community has a major impact on ecosystem processes on a global scale. Anthropogenic stress has a significant effect on the composition, biomass and activity of the microbial community. In addition, this effect depends not only on the anthropogenic activity, but also on the environmental conditions. Modern analytical and molecular methods, including the use of biochemical markers, can be well used to monitor changes in the microbial community. These methods do not monitor the community directly, but detect the substances that are secreted and transformed by microbes and, last but not least, those that are part of them. The amount of these biochemical markers reflects the biomass, condition and taxonomic composition of a particular microbial community. In the presented work, these markers were used to monitor the response of microorganisms in various ecosystems which are affected directly or indirectly by human activity. The results of the dissertation are presented in four articles. Three of them have been published in international journals with IF and one is prepared in the form of a manuscript for publication. The first publication presents the results of research exploring the impact of traditional agriculture in Papua New Guinea on the soil microbial communities, soil...

This diploma thesis deals with methods of packaging influenced the microbiological contamination of meat. The relation among develompment of microbiological contamination and color of meat, according on time of storage and methods of packaging. The first part deals with quality of the meat,chemical composition of meat and post mort changes, when muscles are changed to meat, which we can proces and consume. The main part of the thesis pays methods of packaging and microbiological contamination of meat. The last section describes main bacterias which can cause alimentary diseases. Part of this work is experimental determination of the major groups of microorganisms which can significally affect the quality of the meat. A comparison was made between aerobically refrigerated meat and vakuum preserved meat between 1, 3, 7 and 11 days. As a sample was used pork and poultry. The color of meat was concurrently assessed at the same time by Konica Minolta CM-3500d device. The results were evaluated by CMs-100w Spectramagic NX, indicate values of CIE L*a*b*. The methods of packaging greatly influenced durability dependent on the development of contaminating microflora and color of meat.

The diploma thesis evaluated the qualityof eight types of pharmaceutical cheeses, where microbial activity was observed. The growth od the microorganism was monitored at the time of storage for 3 weeks. Coliform microorganisms psychotropic mikroorganisms, yeasts, molds, enterococci, milling bacteria and total microorganisms were analyzed in the cheeses, The sensory quality of the cheese was evaluated in the case of storage, which was analyzed after 7 days for three weeks. The whole review was repeated three times. Changes in sensory parameters were tested: appearance, consistency, taste, smell, cow, sheep and goat milk impression, overall impression.

This thesis focuses on microbiological quality of fresh herbs from third countries. Analysis of the fresh herbs was performed in a laboratory. Herbal samples was also compared with samples from the Czech Republic and from private production. Some of the herbal packs (consisting of mint, basil and rosemary) were purchased on a public market while others were collected from private productions. Microbiological quality of fresh herbs is very important because the consumers uses them without any proper heat treatment. The laboratory experiment determined the content of the molds and the yeasts, the total number of microorganisms, the coliform microorganisms and the Escherichia coli. All presented samples were also tested to check any presence of Salmonella spp. There were tested 24 samples of the different herbs of different origin. The method of conducting such experiment was plate-based. The results show that does not matter the origin of the herb, but it depends on the type of herb. It was found that the limits for the determination of bacteria Escherichia coli were exceeded. The presence of Salmonella spp. in 25 grams of herb was detected.