Call number: LD2668 .T4 1957 H67 / Master of Science

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Thesis (Ph. D.)--West Virginia University, 2003. / Title from document title page. Document formatted into pages; contains v, 95 p. : ill. (some col.). Vita. Includes abstract. Includes bibliographical references (p. 80-94).

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Methodologies have been devised to genotype the $ kappa$-casein ($ kappa$-CN) and $ beta$-lactoglobulin ($ beta$-LG) loci using the polymerase chain reaction (PCR) and restriction fragment length polymorphisms (RFLPs) analysis. A fragment of 432 base pair from the $ kappa$-CN gene which contains the nucleotide substitutions diagnostic of the A- and B-alleles of $ kappa$-CN was amplified. DNA amplified from the A-variant contained a unique HinfI restriction site, whereas DNA amplified from the B-variant contained a unique TaqI site. Thus, the genotype of the animal could be determined by restriction enzyme analysis. A region extending from exon IV to V of the $ beta$-LG gene was also amplified using PCR. In this region, the B-allele contains 2 HaeIII restriction sites which are not present in DNA amplified from the A-allele. The digestion of the PCR product with HaeIII thus allowed discrimination between the A- and B-alleles. Analysis of bulls (n = 68) used by artificial insemination (AI) centres after 1980, bulls (n = 27) used before 1960, a random sample of male calves (n = 102) and cows (n = 123) revealed a frequency of the B allele of $ kappa$-CN as 0.13, 0.37, 0.22 and 0.19 in these populations, respectively. In the populations of bulls (n = 69) used by AI centres after 1980, bulls (n = 27) used before 1960, a random sample of male calves (n = 99), and cows (n = 129), the B-allele of $ beta$-LG was present at frequencies of 0.60, 0.52, 0.67, and 0.65, respectively. Statistical analysis of these data shows the frequency of the B-allele of $ kappa$-CN was significantly higher in sires (n = 27) which were used by the AI centre before 1960 compared to more modern proven sires (n = 68) (P $<$ 0.01).

Estimates of genetic and phenotypic parameters of lifetime performance traits and estimates of correlations between these and first lactation traits were obtained using multitrait mixed model and Restricted Maximum Likelihood (REML) methodologies, and accounting for all known additive genetic relationships amongst animals in sires pedigree. Part-lifetime performance traits, i.e. two-, three, and four-parity totals of yield and profit, were also included in the analysis. Data were on 82,835 Holstein cows, daughters of 703 sires, calving first between September 1979 and December 1984 in the herds enrolled in Quebec Dairy Herd Analysis Service (QDHAS). Lifetime performance records, however, continued through December 1989. / Results of analysis indicated low estimates of heritability for lifetime performance traits, e.g., lifetime production and profit (.11$ sim$.13) and longevity (.07$ sim$.09). However, production per day of productive life traits had moderate heritability (.28$ sim$.32). Estimates of genetic and phenotypic parameters decreased from part-lifetime to total lifetime performance because residual variances increased at a greater rate compared to rate of increase in sire variances. Both genetic and phenotypic correlations amongst lifetime production, lifetime profit and longevity traits were very high and approached unity in all cases. / Estimates of genetic and phenotypic correlations of first lactation production and profit traits with all measures of part and total lifetime performance were positive and high. These correlations decrease from part-lifetime to total lifetime performance due to part to whole relationships. / Estimates of parameters of lifetime performance traits were mostly free of the effects of selection on milk production. Positive and high genetic correlation of first lactation milk yield with all lifetime performance traits indicated that selection on first lactation milk yield alone will improve all measures of lifetime performance. However, some consideration should be given to measures of reproduction and health which may help in improving the longevity of dairy cattle. (Abstract shortened by UMI.)

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