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Wang, Jianpeng. / Thesis (Ph.D.)--Chinese University of Hong Kong, 2013. / Includes bibliographical references. / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Abstracts also in Chinese.

Many emerging technologies would greatly benefit from reliable methods for the production of functional materials with well-defined 3D nanoscale structure. Conceptually, approaches to produce such architectures are divided into two broad classes; top down and bottom up manufacture. In the top down approach, nanoscale structure is created through the controlled removal of material from a bulk starting object. Top down methods have a proven record of reliability in the fabrication of extended two dimensional arrays with fine control over nanoscale features. However, such approaches become increasingly cumbersome when attempting to define structure in three dimensions rather than two. Bottom up methods promise a more reliable route to the formation of such materials. Here, molecular scale building units self-assemble to form a desired structure, driven by pre-defined interactions between individual motifs. Due to the highly specific molecular recognition properties of nucleic acids, along with their relatively simple synthesis and wide range of potential chemical modifications, DNA nanotechnology is now regarded as a prime route for the bottom up fabrication of nanostructured materials. However, current approaches to the formation of designed 3D DNA crystals are complicated by the difficulties in designing sub-units able to assemble in a predictable fashion over length-scales orders of magnitude larger than themselves. Amphiphiles are able to self-assemble into a variety of 3D crystalline phases driven by the frustrated micro-phase separation of hydrophobic and hydrophilic domains, with the structural properties reliant primarily on overall topology of the molecules rather than their exact chemical and geometrical features. Although the mechanism underlying amphiphile self-assembly is robust, it inherently limits control over the fine-scale structural details. This thesis reports on a new class of self-assembling DNA motifs; amphiphilic cholesterol-functionalised DNA nanostars, \emph {C-stars}. C-stars combine key advantages of all-DNA motifs and conventional amphiphilic molecules -- allowing for the preparation of expanded crystalline frameworks with tunable properties and embedded functionality.

Governments in both advanced and emerging markets invest heavily into joint R&D projects to facilitate inter-firm collaboration and scientific productivity. As a science-based cluster, nanotechnology is a highly R&D-intensive field with very complex interdisciplinary features that enables multiple interactions between scientists from diverse cultural backgrounds working for multi-faceted organizations across public and private sectors and through internationally regulated borders. In this thesis, I examine the main determinants of the dimensions of inter-firm collaboration in high-tech industries particularly among nanotechnology R&D organisations across Europe. Also, I investigate the key factors that influence the innovation, financial and exit performance of nanotech companies during the commercialisation period and across 15 developed and developing countries, taking into consideration the involvement of venture capital (VC) firms. In order to methodically integrate the qualitative and quantitative features of my research study, I employed mixed method to analyse primary and secondary data collected via survey instruments and comprehensive databases; to gain valuable insights into the complexities around nanotech R&D organisations. The regression results show that a predictable legal system; a high level of tolerance for uncertainty; the proximity to key partners; a high level of export demand for high-tech products; and expansionary economic policies, leads to highly valuable and long-term relationships which produces optimal partnership size with an effective organizational structure. I find that a high financial status of nanotech firms equips R&D project managers with sufficient tangible and intangible resources to engage into complex collaborative partnerships which yield innovative performing outcomes. Also, I find that nanotech R&D firms that exit venture capital investments via IPO are more likely to have their head offices in a big city; and access foreign capital to expand manufacturing operations. I conclude that the successful commercialisation of nanotechnology industries across the globe has been due to the substantial R&D public expenditures and private investments into the application and proliferation of nanotechnologies in key converging scientific fields which require robust inter-firm collaborative partnerships to rapidly develop and promote several portfolios of high-tech products that continually satisfy consumer needs in disruptive ways and secure long-term profitability for nanotech R&D organisations.

Wastewater treatment plants (WwTP) act as the principle buffer between anthropogenic sources of Silver Nanoparticles (AgNPs) and environmental targets. AgNPs, given their effective anti-microbial properties, have the potential to negatively impact WwTP processes and organisms within the natural environment. A clear understanding of the fate and transport of AgNPs as they pass through WwTPs is crucial in evaluating AgNPs impacts for WwTP process, the natural environment and in the development of a comprehensive environmental risk assessment for AgNPs. The main aim of this thesis was to carry out an analysis on the fate, transport and transformation of AgNPs through WwTP relevant filtration medias in order to understand more about the toxicological implications for both WwTP processes and receiving environments. AgNPs were synthesised in-house, via an in-situ reduction method, which produced a homogeneous dispersion of nanoparticles of average particle diameter 9.98nm, with a standard deviation of 3.11nm. Column studies and adsorption isotherm experiments were conducted to investigate the fate and transport of silver nitrate, AgNPs and bulk silver across media beds of quartz sand and granulated activated carbon (GAC), both chosen for their relevance in wastewater treatment protocols. TEM imaging and EDS analysis was employed to characterise the AgNPs physically and elementally within the column influents and effluents. An original contribution made to the existing knowledge on AgNPs is that in contrast to bulk silver and silver nitrate, uncoated AgNPs were observed to be highly mobile through the quartz sand media. This high mobility was in contrast with the prior expectation that van der Waals forces of attraction between the positively charged AgNPs and the negative charge of the silica surfaces within the sand bed would lead to some measure of retention within the column matrix. The resulting high mobility of the AgNPs was attributed to particle surface contamination of boride ions originating from the reduction agent used during the synthesis process. This highlights (and reinforces) the importance of better understanding on the implications of the various methods of synthesis and use of capping agents for AgNPs characteristics and the impact this has on fate and transport. AgNPs were also noted to have been significantly altered after their passage through the quartz sand media, with up to 83% of the sample increasing in size, from 9.98nm to an average of 18.26nm and a maximum of 144nm. Particle size measurements were made using the measuring tool available in the GNU Image Manipulation Program (GIMP). This size increase was attributed to the formation of nano-alloy clusters with residual gold and iron compounds, naturally present within the sand bed. In the case of silver-gold alloy clusters, this is expected to exhibit positive implications for future environmental fates of the resulting AgNPs, where the presence of gold in alloy clusters has been observed to significantly deactivate AgNPs silver ion release. In contrast to the sand, it was observed that the GAC was an effective absorber of AgNPs. However, this was observed to be a size dependant relationship, where the GAC was not observed to be effective for adsorption of bulk silver at particle sizes of 300 – 800nm. In this thesis, in addition to the experimental work, a novel, low complexity technique was developed for the detection and quantification of AgNPs in laboratory aqueous solutions. This protocol utilises a laboratory bench top photometer and gave AgNPs concentration results that reliably and accurately reflected that of ICP-MS and ICP-OES results within a detection range of 0.01 and 20mg/L; where the correlation coefficient between the instrument absorbance response and ICP-MS/OES concentration (at 450nm) was R2 0.994.

This dissertation describes a new type of molecular assay for nucleic acids and proteins. We call this technique a digital microarray since it is conceptually similar to conventional fluorescence microarrays, yet it performs enumerative (‘digital’) counting of the number captured molecules. Digital microarrays are approximately 10,000-fold more sensitive than fluorescence microarrays, yet maintain all of the strengths of the platform including low cost and high multiplexing (i.e., many different tests on the same sample simultaneously). Digital microarrays use gold nanorods to label the captured target molecules. Each gold nanorod on the array is individually detected based on its light scattering, with an interferometric microscopy technique called SP-IRIS. Our optimized high-throughput version of SP-IRIS is able to scan a typical array of 500 spots in less than 10 minutes. Digital DNA microarrays may have utility in applications where sequencing is prohibitively expensive or slow. As an example, we describe a digital microarray assay for gene expression markers of bacterial drug resistance.

The characterization of the mechanical behavior of cells has always captured the interest of scientists and, in the last decades, has been facilitated by the development of techniques capable of measuring a cell’s deformability. However, if on one hand, cells are active, living materials that regulate their physiology by generating and transmitting forces throughout their volume, common mechanical characterizations of cells involve material science approaches, which mostly address them as inert materials. As a consequence, although mechanical characterizations of cells have so far provided a wealth of correlations between stiffness and physio-pathological states, they have rarely provided insights into biological function and regulation. In this thesis, a cell nanomechanical platform is presented, whose resolution allows the isolation of the mechanical contribution of load-bearing cellular components. We first demonstrated that tensional forces - rather than the passive viscoelastic properties of the cytoplasm - govern the stiffness of cells at the nanoscale. We then quantitatively characterized the relationship between intracellular forces and the µm-scale patterns of stiffness across the cell surface. This analysis allowed us to calculate multiple physiologically-relevant quantities, such as membrane tension, cortex tension, actin bundle tension, tension-free elastic modulus, and mechanical coupling distances, all from single high-resolution cell stiffness images, providing an unprecedented connection between distinct mechanobiology fields.

Introdução: A alteração de cor dos dentes apresenta-se como um dos fatores que mais concorrem para o desequilíbrio do sorriso, sendo o clareamento dental amplamente difundido e solicitado pelos pacientes. Objetivo: Este estudo in situ teve como objetivo avaliar as mudanças morfológicas e químicas do esmalte quando submetido a três agentes clareadores à base de peróxido de hidrogênio ativados com fonte de luz híbrida e um agente placebo (gel sem peróxido de hidrogênio), por meio do uso da espectrometria de energia dispersiva de raios-X (EDS). Metodologia: Fragmentos de terceiros molares humanos foram divididos em quatro grupos (n=12), para a realização de uma sessão de clareamento com cinco aplicações de oito minutos dos géis clareadores: Placebo (Plac); Lase Peroxide Flex 35% e 15% (DMC) (LPF35LH e LPF15LH); Gel experimental a 10% (DMC) (EXP10LHV), e foram fotocatalizados com luz híbrida: LED azul/laser de diodo (LH) (Whitening Lase II, DMC) ou LED violeta/laser de diodo (LHV) (luz experimental, DMC). Após o clareamento, os espécimes foram fixados a dispositivos intraorais usados pelos participantes durante 15 dias. A composição inorgânica e topografia da superfície de esmalte foram analisadas antes e após o clareamento, e depois de 3, 7 e 15 dias de exposição à saliva. Os valores elementares da composição foram analisados por ANOVA a um critério de medidas repetidas e teste de Tukey. Para a topografia os escores foram determinados por três examinadores previamente calibrados pelo teste Kappa e foi aplicado o teste estatístico de Friedman e Kruskal-Wallis, e as comparações individuais foram realizadas pelo teste de Dunn ( = 0,05). Resultados: De maneira geral, não houve alterações significativas na porcentagem elementar do esmalte nos diferentes períodos estudados. Ao analisar os dois principais elementos, o grupo LPF35HL obteve o menor valor de cálcio (Ca), possuindo diferença estatisticamente significante quando comparado com o grupo EXP10LHV, enquanto os valores de fosfato (P) permaneceram constantes. Morfologicamente somente o grupo EXP10LHV demostrou maior planificação da superfície quando comparado o período de 7 dias com 15 dias. Conclusão: Os diferentes protocolos clareadores empregados, demonstraram alterações pontuais na variação dos elementos químicos e na morfologia do esmalte dental ao longo do período de avaliação. / Introduction: The tooth color change is one of the factors that contributes most to the smile imbalance, and dental bleaching is widely diffused and requested by the patients. Objective: The aimed of this in situ study is to evaluate the morphological and chemical changes of the enamel when submitted to three activated hydrogen peroxide bleaching agents with hybrid light source and a placebo agent (gel without hydrogen peroxide), using energy-dispersive X-ray spectroscopy (EDS). Methodology: Fragments of human third molars were divided into four groups (n = 12) to perform a bleaching session with five eight minute applications of bleaching gels: Placebo (Plac); Lase Peroxide Flex 35% and 15% (DMC) (LPF35LH and LPF15LH); 10% experimental gel (DMC) (EXP10LHV), and photocatalyzed with hybrid light: blue LED / diode laser (LH) (Whitening Lase II, DMC) or violet LED / diode laser (LHV). After bleaching, the specimens were fixed to intraoral devices used by participants for 15 days. The inorganic composition and topography of the enamel surface were analyzed before and after bleaching, and after 3, 7 and 15 days of exposure to saliva. The elementary values of the composition were analyzed by one-way ANOVA at a repeated measures and Tukey\'s test. For the topography the scores were determined by three examiners previously calibrated by the Kappa test and the Friedman and Kruskal-Wallis statistical test were applied, and the individual comparisons were performed by the Dunn test ( = 0.05). Results: In general, there were no significant changes in the elemental percentage of enamel in the different periods studied. When analyzing the two main elements, the LPF35HL group had the lowest calcium (Ca) value, which had a statistically significant difference when compared to the EXP10LHV group, while the phosphate (P) values remained constant. Morphologically, only the EXP10LHV group showed greater surface planning when compared to the period of 7 days with 15 days. Conclusion: The different bleaching protocols employed showed specific alterations in the variation of the chemical elements and the morphology of the dental enamel during the evaluation period.

This thesis describes a detection system for single molecules based on individual single-walled carbon nanotube field-effect sensors. The sensitivity, spatial confinement and transducer gain of the sensor is derived from a conductance controlled electrochemically created defect, which is also chemically reactive. An automated microfluidic system is designed to enable long and stable measurements of the carbon nanotube device in aqueous environment with temperature control of ±0.1°C. A probe DNA can be covalently attached to the defect through an amide bond and the conductance is modulated when a target DNA binds to the probe. As a result, the conductance shows a traditional random telegraph signal and fluctuates between a hybridized and melted state. By monitoring the conductance as a function of temperature, the kinetics and thermodynamics can be extracted, which are comparable to previous fluorescent correlation spectroscopy studies using optical fluorescent resonant energy transfer. By studying the fluctuation amplitude as a function of charge proximity, buffer concentration and solution potential, it is shown that the sensor is based on a field-effect. The sensor has a temporal resolution of 200 μs and a signal to noise ratio of 3-8 when continuously measuring for 30 seconds. By further reducing the parasitics, the sensor has the capabilities to detect biomolecule kinetics down to microsecond resolution, which could make it an attractive tool for single-molecule experiments with fast kinetics.

Synapses play a critical role in neural circuits, and their highly specialized structures and biochemical characteristics have been widely studied in learning and memory. Along with their role in signal transmission, synapses also serve as adhesion structures, yet their mechanical characteristics have not received much attention. Given the important role of mechanics in cell adhesion, mechanical studies of synapses could offer insights into synaptic development, maintenance, and function. Here, I investigated synaptic elasticity in cultured rat hippocampal neurons and suggest that mechanical elasticity may be related to synaptic plasticity. I used torsional harmonic atomic force microscopy (TH-AFM) to measure the nanomechanical properties of functional mature excitatory synapses, whose identity and activity was verified by fluorescence microscopy. I combined TH-AFM with transmission electron microscopy and found that high stiffness of synapses originated from postsynaptic spines, not presynaptic boutons. I observed that spines at functional mature excitatory synapses were on average 10 times stiffer than dendritic shafts and that the distribution of spine stiffness exhibited a lognormal-like pattern. Importantly, I found that spine stiffness was correlated with spine size, and it is well established that spine size is correlated with synaptic strength. Based on the stiffness measurements and theoretical modelling of cell adhesion stability, I suggest that stiffness not only helps maintain spine morphology in the presence of synapse adhesion, but also helps stabilize synaptic adhesion. I propose a mechanical synaptic plasticity model. According to this model, mechanical strength leads to functional strength, which could provide a potential causal link between structural plasticity and functional plasticity of synapses.