Hamburg, Universiẗat, Diss., 2002.

Inaugural dissertation (Ph. D.)--Philipps-Universiät zu Marburg. / Cover title. Includes bibliographical references (p. 32-33).

A taxonomic revision of 51 species of Riccia, nearly three quarters of which are probably endemic to southern Africa, as well as the cosmopolitan, mono typic species, Ricciocarpos natans, is presented. The systematic treatment includes keys to the genera, subgenera, sections, groups and species. Each species is described in detail, accompanied by its nomenclature, as well as information on its geographical distribution and ecology. Several thousand specimens have been collected by the author and by others, notably O.H. Yolk, over the last 10 years or more, and are listed, together with older collections by Amell, Duthie and Garside and by Sim, to name but a few. Illustrations include line drawings of the thalli of every species, plus photographs of the thalli of some and spore micrographs of all. The phylogeny is briefly considered with reference to the following criteria: palaeobotanical, phytogeographical, morphological, cytological and biochemical. A hypothetical ancestor is postulated and primitive character states as opposed to advanced ones are examined. An extensive bibliography is provided. / Thesis (PhD)--University of Pretoria, 1991. / Plant Science / unrestricted

Les métaux lourds et les radionucléides sont présents dans différents écosystèmes du monde à cause de contaminations naturelles ou des activités anthropiques. L’utilisation de micro-organismes pour restaurer ces écosystèmes pollués, processus connu sous le nom de bioremédiation, suscite beaucoup d’intérêt, spécialement aux pH proches de la neutralité. Les minéraux de fer qui encroûtent les bactéries neutrophiles du fer, notamment les Oxydes de Fer Biogéniques (BIOS en anglais), ont une structure très faiblement cristalline, qui en plus de leur grande surface et réactivité font d’eux d’excellents supports pour le piégeage de polluants inorganiques. Dans cette thèse nous avons étudié les différents mécanismes de piégeage de l’uranium uranium par la bactérie neutrophile Sphaerotilus natans, choisie comme modèle bactérien de micro-organismes du fer capables de filamenter en formant des gaines. S. natans peut croître sous forme de cellules individuelles ou formant des filaments. Ces derniers ont été utilisés pour étudier la biosorption d’U(VI) et sa sorption sur les BIOS. De plus, la sorption d’U(VI) sur les analogues abiotiques de ces minéraux de fer a été testée. Afin d’utiliser les filaments de S. natans pour piéger l’U(VI), il était nécessaire d’identifier les facteurs induisant la filamentation de S. natans. L’influence de l’oxygène a été établie en utilisant des techniques de biologie moléculaire et nos résultats ont démontré que tandis qu’en condition d’oxygène saturé elle croît sous forme de cellules individuelles, une diminution modérée d’oxygène à ~ 3 mg O2.L-1 la fait croître sous la forme désirée, des filaments de S. natans.Les BIOS attachés aux filaments de S. natans ainsi que ses analogues abiotiques ont été analysés pas XAS au seuil K du Fe. Les deux matériaux identifiés sont des phosphates de fer(III) amorphes avec une faible proportion de fer(II), qui présentent une réactivité élevée pour le piégeage de polluants inorganiques. L’EXAFS au seuil LIII de l’U a montré la même structure pour les couches O, tandis que celles P, Fe et C étaient différentes en fonction des sorbants. Une étude intégrée qui combine des techniques expérimentales avec des calculs de spéciation a permis de décrire les isothermes d’adsorption de l’U(VI) en utilisant un modèle de complexation de surface. Ces résultats suggèrent que les groupes phosphoryles et carboxyles sont les groupes fonctionnels principaux pour la biosorption d’U(VI) par des filaments de S. natans. Les résultats de cette thèse vont aider à comprendre les processus contrôlant l’immobilisation de l’U(VI), soit par la biosorption sur S. natans, la sorption sur les BIOS ou la sorption sur les phosphates de fer, et en conséquence le devenir de l’U en conditions neutres / Heavy metals and radionuclides are present in some ecosystems worldwide due to natural contaminations or anthropogenic activities. The use of microorganisms to restore those polluted ecosystems, a process known as bioremediation, is of increasing interest, especially under near-neutral pH conditions. Iron minerals encrusting neutrophilic iron-related bacteria, especially Bacteriogenic Iron Oxides (BIOS), have a poorly crystalline structure, which in addition to their large surface area and reactivity make them excellent scavengers for inorganic pollutants. In this PhD work we studied the different mechanisms of uranium scavenging by the neutrophilic bacterium Sphaerotilus natans, chosen as a model bacterium for iron-related sheath-forming filamentous microorganisms. S. natans can grow as single cells and filaments. The latter were used to investigate U(VI) biosorption and U(VI) sorption onto BIOS. In addition, uranium sorption onto the abiotic analogues of such iron minerals was assessed. In order to use S. natans filaments for U(VI) scavenging, it was necessary to identify factors inducing S. natans filamentation. The influence of oxygen was ascertained by using molecular biology techniques and our results revealed that while saturated oxygen conditions resulted in single cell growth, a moderate oxygen depletion to ~ 3 mg O2.L-1 led to the desired filamentous growth of S. natans. BIOS attached to S. natans filaments as well as the abiotic analogues were analysed by XAS at Fe K-edge. Both materials were identified as amorphous iron(III) phosphates with a small component of Fe(II), with a high reactivity towards scavenging of inorganic pollutants. In addition, EXAFS at the U LIII-edge revealed a common structure for the O shells, while those for P, Fe and C were different for each sorbent. An integrated approach combining experimental techniques and speciation calculations made it possible to describe U(VI) adsorption isotherms by using a surface complexation model. These results suggested the role of phosphoryl and carboxyl groups as the main functional groups involved in the U(VI) biosorption by S. natans. The results of this PhD work will help to better understand the processes governing U(VI) immobilization, either by S. natans biosorption, sorption onto BIOS or sorption onto iron phosphates, an thus the fate of uranium in near-neutral pH environments

<p>Metal contaminated stormwater, i.e. surface runoff in urban areas, can be treated in percolation systems, ponds, or wetlands to prevent the release of metals into receiving waters. Plants in such systems can, for example, attenuate water flow, bind sediment, and directly accumulate metals. By these actions plants affect metal mobility. This study aimed to examine the accumulation of Zn, Cu, Cd, and Pb in roots and shoots of plant species common in stormwater areas. Furthermore, submersed plants were used to examine the fate of metals: uptake, translocation, and leakage. Factors known to influence metal accumulation, such as metal ion competition, water salinity, and temperature, were also examined. The following plant species were collected in the field: terrestrial plants – <i>Impatiens parviflora</i>, <i>Filipendula ulmaria</i>, and <i>Urtica dioica</i>; emergent plants –<i> Alisma-plantago aquatica</i>, <i>Juncus effusus</i>, <i>Lythrum salicaria</i>, <i>Sagittaria sagittifolia</i>, and <i>Phalaris arundinacea</i>; free-floating plants – <i>Lemna gibba</i> and <i>Lemna minor</i>; and submersed plants – <i>Elodea canadensis</i> and <i>Potamogeton natans</i>. Furthermore, the two submersed plants, <i>E. canadensis</i> and <i>P. natans</i>, were used in climate chamber experiments to study the fate of the metals in the plant–water system.</p><p>Emergent and terrestrial plant species accumulated high concentrations of metals in their roots under natural conditions but much less so in their shoots, and the accumulation increased further with increased external concentration. The submersed and free-floating species accumulated high levels of metals in both their roots and shoots. Metals accumulated in the shoots of <i>E. canadensis</i> and <i>P. natans</i> derived mostly from direct metal uptake from the water column.</p><p>The accumulation of Zn, Cu, Cd, and Pb in submersed species was in general high, the highest concentrations being measured in the roots, followed by the leaves and stems, <i>E. canadensis</i> having higher accumulation capacity than <i>P. natans</i>. In <i>E. canadensis</i> the Cd uptake was passive, and the accumulation in dead plants exceeded the of living with time. The capacity to quickly accumulate Cd in the apoplast decreased with successive treatments. Some of the Cd accumulated was readily available for leakage. In <i>P. natans,</i> the presence of mixtures of metal ions, common in stormwater, did not alter the accumulation of the individual metals compared to when presented separately. It is therefore, proposed that the site of uptake is specific for each metal ion. In addition cell wall-bound fraction increased with increasing external concentration. Further, decreasing the temperature from 20ºC to 5ºC and increasing the salinity from 0‰ to 5‰ S reduced Zn and Cd uptake by a factor of two.</p><p>In <i>P. natans</i> the metals were not translocated within the plant, while in<i> E. canadensis </i>Cd moved between roots and shoots. Thus,<i> E. canadensis</i> as opposed to <i>P. natans</i> may increase the dispersion of metals from sediment via acropetal translocation. The low basipetal translocation implies that neither <i>E. canadensis</i> nor <i>P. natans</i> will directly mediate the immobilisation of metal to the sediment via translocation.</p><p>To conclude, emergent and terrestrial plant species seem to enhance metal stabilization in the soil/sediment. The submersed plants, when present, slightly increase the retention of metals via shoot accumulation.</p>

Metal contaminated stormwater, i.e. surface runoff in urban areas, can be treated in percolation systems, ponds, or wetlands to prevent the release of metals into receiving waters. Plants in such systems can, for example, attenuate water flow, bind sediment, and directly accumulate metals. By these actions plants affect metal mobility. This study aimed to examine the accumulation of Zn, Cu, Cd, and Pb in roots and shoots of plant species common in stormwater areas. Furthermore, submersed plants were used to examine the fate of metals: uptake, translocation, and leakage. Factors known to influence metal accumulation, such as metal ion competition, water salinity, and temperature, were also examined. The following plant species were collected in the field: terrestrial plants – Impatiens parviflora, Filipendula ulmaria, and Urtica dioica; emergent plants – Alisma-plantago aquatica, Juncus effusus, Lythrum salicaria, Sagittaria sagittifolia, and Phalaris arundinacea; free-floating plants – Lemna gibba and Lemna minor; and submersed plants – Elodea canadensis and Potamogeton natans. Furthermore, the two submersed plants, E. canadensis and P. natans, were used in climate chamber experiments to study the fate of the metals in the plant–water system. Emergent and terrestrial plant species accumulated high concentrations of metals in their roots under natural conditions but much less so in their shoots, and the accumulation increased further with increased external concentration. The submersed and free-floating species accumulated high levels of metals in both their roots and shoots. Metals accumulated in the shoots of E. canadensis and P. natans derived mostly from direct metal uptake from the water column. The accumulation of Zn, Cu, Cd, and Pb in submersed species was in general high, the highest concentrations being measured in the roots, followed by the leaves and stems, E. canadensis having higher accumulation capacity than P. natans. In E. canadensis the Cd uptake was passive, and the accumulation in dead plants exceeded the of living with time. The capacity to quickly accumulate Cd in the apoplast decreased with successive treatments. Some of the Cd accumulated was readily available for leakage. In P. natans, the presence of mixtures of metal ions, common in stormwater, did not alter the accumulation of the individual metals compared to when presented separately. It is therefore, proposed that the site of uptake is specific for each metal ion. In addition cell wall-bound fraction increased with increasing external concentration. Further, decreasing the temperature from 20ºC to 5ºC and increasing the salinity from 0‰ to 5‰ S reduced Zn and Cd uptake by a factor of two. In P. natans the metals were not translocated within the plant, while in E. canadensis Cd moved between roots and shoots. Thus, E. canadensis as opposed to P. natans may increase the dispersion of metals from sediment via acropetal translocation. The low basipetal translocation implies that neither E. canadensis nor P. natans will directly mediate the immobilisation of metal to the sediment via translocation. To conclude, emergent and terrestrial plant species seem to enhance metal stabilization in the soil/sediment. The submersed plants, when present, slightly increase the retention of metals via shoot accumulation.

Le foisonnement filamenteux est un problème récurant dans de nombreuses stations d'épuration à boues activées. L'objectif de ces travaux est d'améliorer la compréhension des mécanismes physiologiques et moléculaires impliqués dans la filamentation des microorganismes, afin de pouvoir orienter de futures stratégies de lutte contre le phénomène de bulking. Sphaerotilus natans, qui peut croître réversiblement sous forme monocellulaire ou filamenteuse, a été utilisée comme bactérie modèle pour cette étude. Différents types de cultures, ainsi que des suivis par cytométrie en flux et marquage au cFDA/SE, ont montré que les diverses souches de S. natans adoptent des morphologies différentes et que les filaments croissent par divisions cellulaires successives et non par un chaînage des bactéries. Une analyse par RT-QPCR a mis en évidence que l'expression du gène sthA augmente fortement après induction de la filamentation et reste ensuite à un niveau élevé. Une comparaison de l'expression protéique des formes monocellulaire et filamenteuse, par LC-MS-MS, a permis d'identifier des protéines impliquées dans la filamentation, et notamment dans la synthèse de la gaine. La concentration intracellulaire en ARNr, mesurée par RT-QPCR, varie durant la croissance de S. natans et d'autres microorganismes, entraînant une diminution importante de l'intensité du marquage FISH, mesurée par cytométrie en flux. L'utilisation de la technique FISH pour quantifier des microorganismes est donc remise en question, d'autant plus dans des matrices aussi complexes que les boues activées. Ces observations mettent également en doute l'hypothèse, émise en utilisant ce mode de quantification, d'une déstructuration des filaments consécutive à un retour à des conditions de culture plus favorables.