Climate change is threatening biodiversity, causing populations and species to adapt, or otherwise, become extinct. Sea turtles have survived dramatic climate changes in the past, however, due to a history of intense human exploitation, and the current anthropogenic threats, their current resilience may be jeopardized. The main pursuits of this thesis were to i) evaluate the resistance of green turtles to predicted climate change impacts, using a globally significant rookery, in Poilão, Guinea-Bissau, as a case study; and ii) assess key population parameters to inform the conservation management of this resource. As the work developed I additionally had the opportunity to study the dynamics of an emerging disease in a juvenile foraging aggregation from Puerto Rico, which contributed to a broader understanding of resilience in this species. Specifically, I investigate the nest site selection behaviour of green turtles, their nesting environment, and the outcomes for their offspring, at Poilão, and apply this information to infer on the resilience of this population under future scenarios of climate change. I explore the connectivity established by the dispersal of post-hatchlings from Poilão, followed by their recruitment to foraging grounds, to set the geographical context of this major population. Lastly, I model the dynamics of Fibropapillomatosis, which affects juvenile green turtles globally, and examine the potential for disease recovery. The green turtle rookery in Poilão shows some resilience to expected climate change impacts. This significant population likely contributes to all juvenile foraging aggregations along the west coast of Africa, and to some extent to those in South America. Currently, green turtles are capable of recovery from Fibropapillomatosis, however, the incidence of disease may be enhanced by climate change.

The red-headed woodpecker is a primary cavity excavator found throughout the Eastern Deciduous Forest and parts of the Great Plains. Although widespread, the red-headed woodpecker is generally considered uncommon, with patchily distributed populations. Over the past 50 years, this species has experienced precipitous, range-wide declines. The red-headed woodpecker uses a variety of cover types to meet resource needs across the annual cycle, ranging from oak savannas and wetlands, to mature beech forests and urban parks. Given their apparent adaptability to such a wide range of habitats, causes of declines are perplexing. To understand and stem declines, recent studies have focused on quantifying this species’ habitat requirements. Most of these studies have focused on a single cover type, often open forests, during the breeding season. However, effective management requires comprehensive knowledge of red-headed woodpecker habitat needs in a variety of cover types across the annual cycle. My thesis seeks to address this knowledge gap. I studied red-headed woodpecker habitat selection during both the breeding and non-breeding seasons at Fort A.P. Hill (FAPH) in Caroline County, Virginia. FAPH contains a variety of cover types that red-headed woodpeckers are known to use for breeding and overwintering, including: wetlands, open forests and closed forests. In Chapter 1, I investigated winter roost-site selection of red-headed woodpeckers in a burned forest stand. My study was the first to quantify winter habitat selection for this species. My aim was to identify variables driving winter roost-site selection at two relevant spatial scales, and estimate their parameter weights using logistic regression. I found that red-headed woodpeckers preferred habitat around the roost tree that contained a higher basal area of snags and mast-producing trees. They differentially selected roost trees based on taxon and decay state. My results indicate that managers should adopt practices that promote snag generation and retention, and mature oak recruitment. In chapter 2, I focused on red-headed woodpecker breeding season habitat requirements, as many other studies have done. However, unlike other studies that investigated habitat selection within a single cover type, I found and characterized nest-sites in three distinct cover types (wetlands, closed forests, open forests). I used a comparative approach to identify cover-type specific nest-habitat thresholds at the landscape, patch and tree scales using boosted regression trees (BRT). Although models at the landscape scale inadequately discriminated between nest and available sites, models at the patch and tree scales achieved excellent discrimination ability. I found that red-headed woodpeckers are consistent in their preference for a number of habitat features at the patch (high medium/large snag density, open canopy) and tree (large diameter tree with less bark) scales, irrespective of cover type context. However, I also found cover-type specific habitat preferences at the patch scale, indicating red-headed woodpeckers are flexible in their selection of features surrounding the nest and responsive to the broader habitat context. My findings suggest that there are a number of habitat features that facilitate breeding for red-headed woodpeckers generally, and management that promotes these features will be effective in a variety of habitat contexts. They also indicate that management can be tailored to provide the most suitable habitat for each of these three commonly used cover types. Together, Chapters 1 and Chapter 2 expand our knowledge of this declining keystone species’ habitat needs across the full annual cycle. But there is still much to know. The choices of habitat selection have consequences. Determining the conditions under which habitat features function to either help or harm populations is a necessary next step. While not a part of this thesis, I am currently investigating the factors that drive nest success among cover types, linking breeding-site selection to population dynamics. I also have behavioral data that will help reveal the mechanisms that either facilitate or constrain the exploitation of food resources across cover types. Finally, the red-headed woodpecker is a facultative migrant that often shifts habitat associations to take advantage of seasonally available resources. Data from my point count surveys—conducted over two successive winter and summer seasons—allow for development of dynamic occupancy models. Modeling shifts in occupancy across seasons will show the habitat factors underlying seasonal shifts. Site-specific differences in colonization, extinction and frequency of occupancy, within seasons but across years, will further our understanding of what constitutes habitat quality for this species, in both the breeding and non-breeding seasons.

Habitat selection theory presumes that organisms are not distributed randomly in their environments because of habitat-specific differences in reproductive success and survival; unfortunately, many previous studies were either unable or failed to look for evidence of processes shaping nest site selection patterns. Furthermore, little is known about adaptive nest site selection in northern environments where habitats often have little vegetation and time and climatic constraints may be pronounced. Therefore, I investigated patterns of nest site selection by common eider ducks (<i>Somateria mollissima</i>) at an island colony in Canadas Eastern Arctic, and looked for evidence of selective processes underlying these patterns by employing experimental and observational techniques.<p>I characterized physical features of (a) non-nest sites (b) active nest sites and (c) unoccupied nest sites that had been used in previous years. Habitat features that distinguished non-nest sites from unoccupied nest sites were also important in distinguishing between active and unoccupied nest sites during the breeding season. Active nest sites were closer to herring gull (<i>Larus argentatus</i>) nests, farther from the ocean and had organic substrates. In general, habitat features associated with nest use were not strongly associated with success after the onset of incubation. Nests near fresh water ponds were more successful in one study year, but in the other two study years successful nests were initiated earlier and more synchronously than were unsuccessful nests. Common eiders settled to nest first near the geographic centre of the colony, whereas sites near the largest fresh water pond were occupied later; distance to ocean had no observable effect on timing of nesting. Nest density was greater farther from the ocean, but timing of nest establishment did not differ between high and low density plots. <p>I tested whether moss or duck down placed in nest bowls could increase nest establishment, or advance laying date. I placed this extraneous material in bowls before nesting and found no difference in likelihood of nest establishment; however, bowls containing duck down were initiated earlier (or had higher survival) than those containing no nesting material. To investigate the role of nest shelter and microclimate in nest site choices and female body condition, I placed plywood nest shelters over established nests. Temperature probes indicated that artificially-sheltered females experienced more moderate thermal environments and maintained higher body weight during late incubation than did unsheltered females. However, few eiders nested at naturally-sheltered sites, possibly because nest concealment increases susceptibility to mammalian predators. My results suggest that eider nest choices likely reflect trade-offs among selective pressures that involve the local predator community, egg concealment, nest microclimate and energy use.

The aim of this study was to determine the habitat features affecting nest site selection and breeding success of the endangered Egyptian Vultures (Neophron percnopterus) breeding around the town of Beypazari. We searched and monitored nest sites in the study area (750 km2) for the years 2010 and 2011. The differences in terms of habitat features between nest sites and random points distributed along cliffs, and between successful and failed nest sites were investigated using both parametric approaches and machine learning methods with 21 habitat variables. The size of the Beypazari population of Egyptian Vultures was estimated to be 45 pairs. Seventeen nests in 2010 and 37 nests in 2011 were found and monitored. The breeding success of the population was estimated to be 100% in 2010 and 70% in 2011. Random Forests was the modeling technique with the highest accuracy and the modeling process chose 6 and 4 variables affecting nest site selection and breeding success of the species, respectively. Results showed that human impact was a potential factor governing the distribution of nest sites in the area and increased the probability of breeding failure as vultures clearly preferred to nest away from nearby villages, towns and roads, and nests on lower cliffs and nests that are close to the dump site (therefore the town center) was prone to failure. Utilization of elevation gradient and aspect showed trends similar to other populations of the species, with probability of nesting increasing at lower altitudes and for south facing cliffs. The overall results emphasize the potential conflict between human presence and the population of Egyptian Vultures in the area. Continuous monitoring of the nest sites and conservation activities towards raising public awareness are advised.

Habitat selection theory presumes that organisms are not distributed randomly in their environments because of habitat-specific differences in reproductive success and survival; unfortunately, many previous studies were either unable or failed to look for evidence of processes shaping nest site selection patterns. Furthermore, little is known about adaptive nest site selection in northern environments where habitats often have little vegetation and time and climatic constraints may be pronounced. Therefore, I investigated patterns of nest site selection by common eider ducks (<i>Somateria mollissima</i>) at an island colony in Canadas Eastern Arctic, and looked for evidence of selective processes underlying these patterns by employing experimental and observational techniques.<p>I characterized physical features of (a) non-nest sites (b) active nest sites and (c) unoccupied nest sites that had been used in previous years. Habitat features that distinguished non-nest sites from unoccupied nest sites were also important in distinguishing between active and unoccupied nest sites during the breeding season. Active nest sites were closer to herring gull (<i>Larus argentatus</i>) nests, farther from the ocean and had organic substrates. In general, habitat features associated with nest use were not strongly associated with success after the onset of incubation. Nests near fresh water ponds were more successful in one study year, but in the other two study years successful nests were initiated earlier and more synchronously than were unsuccessful nests. Common eiders settled to nest first near the geographic centre of the colony, whereas sites near the largest fresh water pond were occupied later; distance to ocean had no observable effect on timing of nesting. Nest density was greater farther from the ocean, but timing of nest establishment did not differ between high and low density plots. <p>I tested whether moss or duck down placed in nest bowls could increase nest establishment, or advance laying date. I placed this extraneous material in bowls before nesting and found no difference in likelihood of nest establishment; however, bowls containing duck down were initiated earlier (or had higher survival) than those containing no nesting material. To investigate the role of nest shelter and microclimate in nest site choices and female body condition, I placed plywood nest shelters over established nests. Temperature probes indicated that artificially-sheltered females experienced more moderate thermal environments and maintained higher body weight during late incubation than did unsheltered females. However, few eiders nested at naturally-sheltered sites, possibly because nest concealment increases susceptibility to mammalian predators. My results suggest that eider nest choices likely reflect trade-offs among selective pressures that involve the local predator community, egg concealment, nest microclimate and energy use.

Many factors affect the productivity of songbirds. Which vegetation types the birds inhabit, nest-site characteristics, and adult behavior at the nest may affect predation and parasitism frequencies, fecundity, and nest survival and fledgling survival. All of these metrics determine reproductive success of individuals and may influence population persistence, especially for threatened and endangered species. My research investigated factors that affected these metrics for endangered black-capped vireos (Vireo atricapilla). Shrubland is considered high quality vireo habitat, with woodland vegetation types considered marginal. I located and monitored nests, conducted nest behavior observations, recorded behavior and predation at nests using video cameras, and resighted fledglings in shrubland, oak-juniper woodland, and deciduous woodland during the 2008–2010 breeding seasons. I monitored 302 black-capped vireo nests in 259 territories and resighted 350 fledglings with unique color combinations. Apparent nest success, nest survival, success of first nest attempts, parasitism and predation frequency, and fecundity did not differ statistically among vegetation types. Parasitism frequency was nearly twice as high in shrubland (22 percent) than in either woodland (12 percent in each) and varied by year. Nest-site characteristics differed among vegetation types, but nest survival was affected only by nest height and year; nests placed higher from the ground and nest attempts in 2008 and 2009 had lower survival. Fledgling survival was not affected by vegetation type or proximity of the nest to oak-juniper woodland. Nest behavior was not affected by vegetation characteristics, though nest attentiveness during incubation increased as average cover from 0 to 2 m increased. Females spent 80 percent more time on nests during incubation and 250 percent more time on nests during the nestling stage than males, but visitation was similar for each sex. Overall, the probability of nest success improved as male participation increased. My results emphasize the importance of male participation in determining the outcome of nests for species exhibiting bi-parental care. Furthermore, woodland habitats previously considered marginal may be good quality habitat in areas with large populations of black-capped vireos. Recognizing woodlands as non-typical, yet still suitable, habitat will allow managers to incorporate these vegetation types into management plans and recommendations for landowner conservation incentive programs.

Nest site selection and nesting success of plains sharp-tailed grouse were examined on the Grand River National Grassland in South Dakota during the nesting season from 2009-2012. We used conditional logistic regression to assess vegetation production, ecological site description, and landscape position on nest site selection. Two competing models regarding nest site selection: top model consisted of non-native forbs and native cool-season grasses, second best model included all grass and forb. Nine ESDs were used for nesting; loamy and clayey ecological sites most frequently used and produced the highest standing crop. Most frequent observed nest site State were Annual/Pioneer Perennial and Introduced and Invaded Grass. Top model for nest daily survival rates included litter, second-best model included ESD; second-best model showed negative effect for nests initiated in thin claypan, limy backslope, and sandy ecological sites. Based on daily survival estimate and 23-day incubation period, nests were 59% successful.

Northern Goshawk breeding habitat was conceptualized and analyzed as a system composed of different sized components organized within a hierarchy. The organization of the hierarchy was asymmetric with smaller components nested within and subordinate to larger components. Components considered in the breeding habitat hierarchy of goshawks were nest tree, nest site, nest territory, foraging area, and landscape. Choice at any level within the hierarchy was contrasted with the next level in the hierarchy. Thus it was found that goshawks chose nest trees with a largerdbh (79.0 ± 4.4 cm) than the nest site average (43 ± 2.7 cm) (p=0.000036); the averagedbh of the nest site (43.2± 3.1 cm) was significantly larger than the territory (33.2± 1.9cm) (p=0.018). The nest territory when contrasted with random unoccupied locations in the landscape demonstrated a composition of a central site of trees with largedbh and fewer stems when compared with the surrounding forest. I hypothesize that this pattern reduces thepredation risk at the nest site. I investigated the nest site relative to the assumed foraging area (radius of 3000m; approximately 3000ha). Goshawks selected nest sites which were significantly further from young clear cuts (>10 ha). The average distance from a nest site to a recentclearcut greater than 10 ha was 1,350 m of the nest while for unoccupied sites the average distance was 770 m (p = 0.011). Finally, at the landscape level, areas of approximately 10,000 ha, goshawks on Vancouver Island were more abundant, had more nest sites, and had higher productivity per active nest in old growth forests (>120 years) than in either second growth (majority less than 80 years) or fragmented landscapes. The majority of goshawk prey, as determined though pellet analysis was red squirrel (69%). Red squirrels were equally abundant in second growth and old growth yet less abundant in fragmented landscapes. Despite similar abundance of their main prey item goshawks were not as abundant in second growth forests as in old growth forests. I conclude that the structure of second growth and fragmented landscape reduces the availability of key prey species and therefor the suitability of these landscape fpr goshawks is lower. / Graduate

Development and climate change in the sagebrush habitats are causing population declines of North American hawks and eagles. For these species, understanding the landscape features that are preferred for nesting and the prey they consume in sagebrush habitats are important in developing conservation plans. Specifically, we know little of the preferred nest-sites and diet of Ferruginous Hawks (Buteo regalis) and Golden Eagles (Aquila chrysaetos) many locales. In our study, we determined the landscape characteristics associated with nest sites for these two raptor species in the Uintah Basin, UT to predict where nests may occur in our study area. We found that slope, elevation, distance to nearest oil and gas wells, geology, and facing south were the most important variables in characterizing Golden Eagle nest-sites. Elevation, slope, vegetation type, and distance to nearest oil and gas wells were the most important variables in characterizing Ferruginous Hawk nest-sites. In addition, we looked at the diets of Golden Eagles, Ferruginous Hawks, and Northern Goshawks in the Uinta Basin, UT using a genetic analysis method novel to raptors. We found species consistent with previous diet studies and detected prey items not previously reported, including the Western Whiptail (Aspidocelis tigris), Domestic Cow (Bos Taurus), Domestic Pig (Sus scrofa), and Rock Bass (Amboplites rupestris) within Ferruginous Hawk samples. Results from our study can provide managers with tools to better survey for nest-sites and to provide an alternative method of diet analysis to provide insight into prey species important to these raptors.

Cyclura ricordii is an endemic iguana from Hispaniola and is listed as Critically Endangered on the IUCN. The main threats are predation by introduced mammals, habitat destruction and hunting. The present study focused on two nesting areas in Pedernales in the Dominican Republic. The hypothesis tested is that natal philopatry influences dispersal and nest site selection. Monitoring and sampling took place during 2012-2013. Polymorphic markers were used to evaluate whether natal philopatry limits dispersal at multiple spatial scales. Ripley’s K, revealed that nests were significantly clustered. Hierarchical AMOVA revealed that nest site aggregations did not explain a significant portion of genetic variation. However, Mantel’s tests revealed significant positive correlations between genetic and geographic distance. These results indicate that natal philopatry limits dispersal at a course spatial scale, but does not influence nest site selection at a fine spatial scale.