Poster exhibited at GPSC Student Showcase, February 24th, 2016, University of Arizona.

Hyperpolarized 83Kr has previously demonstrated MRI contrast that is sensitive to the chemical composition of the surface in a porous model system. One-dimensional nuclear magnetic resonance spectroscopy of hyperpolarized 83Kr has also revealed distinctive longitudinal relaxation times from selected regions of an ex vivo rat lung originating from differences in surface to volume ratio. However, at the time, MRI using longitudinal relaxation for contrast was not attempted due to limited signal intensities. Methodological advances of the spin exchange optical pumping process have led to a substantial increase in the 83Kr hyperpolarization and the resulting signal intensity. This methodology originates from a below-ambient pressure hyperpolarization technique explored and developed in this work. Using the improved methodology for spin exchange optical pumping of isotopically enriched 83Kr has resolved anatomical details of ex vivo rodent lungs using hyperpolarized 83Kr MRI for the first time. Different 83Kr longitudinal relaxation times were found between the main bronchi and the parenchymal regions of the lung. The T1 weighted hyperpolarized 83Kr MRI provided the first demonstration of surface quadrupolar relaxation pulmonary MRI contrast. Novel hyperpolarization techniques of 129Xe have also been explored resulting a study into the combustion process of methane. Using 129Xe as a probe into the combustion process permitted the first in situ MRI of combustion and enabled spatial-velocity profiles.

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A synthetic aperture microwave near-field system is used to image biophysical objects in order to investigate the nature of radar-target interaction. Two different imaging algorithms for focusing data collected over a two-dimensional planar aperture are investigated. The first of these is the single frequency backward propagation technique which is mathematically simple to implement and provides a high degree of resolution. Secondly, a multifrequency development of the backward propagation algorithm is presented and derived from two separate perspectives. This latter algorithm, known as the auto-focusing algorithm, requires no information about the range of the target from the aperture. Full characterisation by simulation of both algorithms is carried out and different filtering techniques are investigated. The backward propagation algorithm is applied to the polarimetric imaging of three different leafless trees and a sugar beet plant at the X-band frequency of 10GHz. The images so produced demonstrate that the backscattered signal is dependent on the orientation of individual tree elements with respect to the polarisation. Furthermore, multiple scattering terms can be identified within the structure of the tree. The auto-focusing algorithm is applied to the polarimetric imaging of two trees at 10GHz and repeat measurements are made over several months. As with the single frequency measurements, the backscattered signal is dependent on the orientation of individual tree elements relative to the polarisation. The relative contributions from the leaves and branches of the trees to the backscattered signal are assessed and found to be seasonally dependent. Measurements are also carried out to investigate the variation of backscatter from a beech tree with varying incidence angle. It is demonstrated that at small angles of incidence, the leaves are the dominant source of backscatter but at large incidence angles, the branches and trunk of the tree have the greatest contrbution.

<p> Autosomal Dominant Polycystic Kidney Disease (ADPKD) is among the most prevalent life-threatening genetic conditions. Despite this, no approved medical therapies exist to treat the disease. Until the recent past, no methods could reliably measure the course of the disease far in advance of end stage renal disease (ESRD). As normal tissue is progressively destroyed or blocked by enlarging cysts, remaining nephrons compensate in a process called hyperfiltration. This beneficial physiological response confounds tests of renal function. Thus, potential interventions could not be tested against a reliable measurement of disease progression. </p><p> However, progressive changes are visually apparent on medical imaging examinations throughout the course of ADPKD. The search for ADPKD proxy biomarkers is now focused on quantitative imaging, or the extraction of information from medical images for purposes of diagnosis or disease tracking. Recent studies from the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)- sponsored Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease (CRISP) showed Total Kidney Volume (TKV) is a usable quantitative imaging biomarker which can track disease in the early, asymptomatic phase and register measurable changes in as little as 12 months. These findings launched several new trials into potential ADPKD therapies. </p><p> Advanced analysis of polycystic kidney images, however, has never been done. The method CRISP used to extract TKV was stereology, an efficient means to estimate volume. However, stereology was tradi- tionally a dead end for further advanced analysis. TKV is useful for clinical trials and large population-based studies, but cannot accurately predict disease progression or stratify risk due to known out- lier cases. Thus, the utility of TKV for individual patient prognosis is limited. This work builds upon stereology data, describing a reliable and accurate new semi-automatic method to fully segment images us- ing only labeled stereology grids. Then, two new second generation quantitative imaging biomarkers are introduced and analyzed: Cyst- Parenchyma Surface Area (CPSA) and cyst concentration. These new physiologically motivated biomarkers will complement or potentially replace TKV in efforts to bring quantitative imaging to individual patients. </p><p> The goal of this body of work is to enable a pathway for efficient advanced image analysis in ADPKD, never before attempted in this dis- order, and to define new quantitative imaging biomarkers which will complement or replace existing ones in hopes of making individualized disease tracking for ADPKD patients a reality.</p>

Three new reconstruction methods for quantitative phase imaging, including two interrelated two-dimensional methods, called multifilter phase imaging with partially coherent light and phase optical transfer function recovery, which lead to a third three-dimensional method, called tomographic deconvolution phase microscopy, were developed in response to a growing need among biomedical end users for solutions which can be integrated on standard microscope platforms. The performance of these new methods were evaluated using modelling and simulation as well as experimentation with known test cases. In addition to the development of new methods, existing methods for quantitative phase imaging were applied to characterize the effects of manufacturing, cleaving, and fusion splicing in large-mode-area erbium- and ytterbium-doped optical fibers.

No description available.

published_or_final_version / abstract / Electrical and Electronic Engineering / Doctoral / Doctor of Philosophy

published_or_final_version / abstract / Electrical and Electronic Engineering / Doctoral / Doctor of Philosophy