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Student Number : 0002920M - MSc dissertation - School of Animal, Plant and Environmental Sciences - Faculty of Science / Sustainability of commercial plantations is dependent on the conservation of soil nutrients, especially on the ancient, leached soils of the tropics. This is particularly important when limited fertilization is practiced. To assess the sustainability of commercial plantations, various sustainability indicators have been suggested. One such indicator is that of biodiversity. The measurement of soil faunal diversity is important as soil fauna play an active role in the cycling of nutrients through the decomposition of plant residues and organic matter. The diversity and different feeding activities of soil fauna influence the rate at which nutrient cycling occurs either through microbial grazing, faecal deposition, the mixing of litter with the mineral soil as well as through the spreading of microbial inoculum. Management practices may, however, negatively influence nutrient availability through losses associated with the burning and removal of slash residues, thus changing the soil faunal community composition. In Eucalyptus grandis plantations in South Africa, the site is usually burned following the harvest and prior to replanting, which may markedly disrupt soil faunal function and nutrient availability. Soil biological processes, nutrient loss and soil faunal composition were the focus of this study. Nutrient losses associated with fire and slash management practices were determined by comparing the quantity of nutrients lost from the slash that was either spread or piled following burning. The in situ nitrogen and phosphorus mineralization rates and soil faunal composition were measured in six randomly located plots, three burned and three unburned, prior to and after a low intensity fire. Results indicate that 78 – 99% of phosphorus, nitrogen and carbon were lost from the slash as a result of burning, with a greater percentage loss occurring from the slash that was spread. It was further shown that within the burned plots the nitrogen availability was enhanced four fold within the first month following the fire. Phosphorus availability was also enhanced ten fold as a result of the burning, however, these effects on nitrogen and phosphorus availability were short lived. Soil faunal diversity was low both prior to and after burning. Ants are the dominant soil fauna. Soil faunal composition was more markedly influenced by season than by fire, with millipedes occurring in all plots in spring, prior to the fire and ants dominating in summer, post fire.

Grass-dominated ecosystems in many regions around the world have experienced increased abundance of woody plants during the past 100 yrs. In the Rio Grande Plains of southern Texas, subtropical woodlands, dominated by C3 trees/shrubs capable of symbiotic N2-fixation, have become significant components of landscapes that were once dominated by C4 grasslands. Upland areas in this region now consist of small discrete clusters and large groves of woody vegetation embedded in a grassy matrix, while lower-lying portions of the landscape are dominated by closed-canopy woodlands. I used soil δ13C in conjunction with aerial photography and geostatistics to quantify landscape-scale vegetation dynamics in uplands of this savanna parkland. Spatial patterns of soil δ13C in grids and transects traversing woody patches indicated larger woody groves were formed from small discrete clusters of woody plants that spread laterally and eventually coalesced. Soil δ13C contour maps revealed some clusters are currently growing rapidly towards each other and might coalesce into groves in the near future, while some clusters remained relatively stable. Kriged maps of soil δ13C provided a strong spatial context for future studies aimed at understanding the functional consequences of this change in landscape structure. The dominant invading woody plant, honey mesquite (Prosopis glandulosa), was important in determining the spatial pattern of soil δ13C, supporting the hypothesis that they serve as recruitment foci and facilitate the establishment of subordinate woody species. Leaf δ15N values suggested that the N2-fixing mesquite influenced the N nutrition of nearby non-N2-fixing shrubs, thus, suggesting a mechanism by which mesquite could facilitate establishment of other woody species. In closed-canopy drainage woodlands, however, spatial patterns of soil δ13C were no longer controlled by the presence of mesquite, but by the amount of soil organic carbon and soil texture. The positive correlation between silt+clay and soil δ13C indicates that the formation of organomineral complexes and microaggregates may slow SOC turnover rates and favor the persistence of C4-derived SOC from the original grassland. This study enhances our understanding of potential patterns, causes and consequences of grassland to woodland conversions which are underway today in many grass-dominated ecosystems around the world.

Grass-dominated ecosystems in many regions around the world have experienced increased abundance of woody plants during the past 100 yrs. In the Rio Grande Plains of southern Texas, subtropical woodlands, dominated by C3 trees/shrubs capable of symbiotic N2-fixation, have become significant components of landscapes that were once dominated by C4 grasslands. Upland areas in this region now consist of small discrete clusters and large groves of woody vegetation embedded in a grassy matrix, while lower-lying portions of the landscape are dominated by closed-canopy woodlands. I used soil δ13C in conjunction with aerial photography and geostatistics to quantify landscape-scale vegetation dynamics in uplands of this savanna parkland. Spatial patterns of soil δ13C in grids and transects traversing woody patches indicated larger woody groves were formed from small discrete clusters of woody plants that spread laterally and eventually coalesced. Soil δ13C contour maps revealed some clusters are currently growing rapidly towards each other and might coalesce into groves in the near future, while some clusters remained relatively stable. Kriged maps of soil δ13C provided a strong spatial context for future studies aimed at understanding the functional consequences of this change in landscape structure. The dominant invading woody plant, honey mesquite (Prosopis glandulosa), was important in determining the spatial pattern of soil δ13C, supporting the hypothesis that they serve as recruitment foci and facilitate the establishment of subordinate woody species. Leaf δ15N values suggested that the N2-fixing mesquite influenced the N nutrition of nearby non-N2-fixing shrubs, thus, suggesting a mechanism by which mesquite could facilitate establishment of other woody species. In closed-canopy drainage woodlands, however, spatial patterns of soil δ13C were no longer controlled by the presence of mesquite, but by the amount of soil organic carbon and soil texture. The positive correlation between silt+clay and soil δ13C indicates that the formation of organomineral complexes and microaggregates may slow SOC turnover rates and favor the persistence of C4-derived SOC from the original grassland. This study enhances our understanding of potential patterns, causes and consequences of grassland to woodland conversions which are underway today in many grass-dominated ecosystems around the world.

Shade tree incorporation is beneficial in coffee cropping systems under sub-optimal conditions. This study was performed in lowland Costa Rica, at a 12-year-old experimental coffee farm. The main objective was to compare the effect of a nitrogen fixing shade tree, Erythrina poeppigiana, on nutrient availability in the rhizosphere of coffee under conventional fertilization. Accumulation of nutrients (mineral N, available P, and exchangeable base cations) in rhizosphere relative to bulk soil was greater under shade than full sun. Low nitrate availability in rhizosphere soil of full sun coffee was explained by root-induced acidification relative to bulk soil, as abundance of ammonia-oxidizing bacteria (AOB), which mediate nitrification, were positively correlated with pH. Organic fertilization enhanced AOB abundance and altered soil bacterial community structure relative to conventional fertilization. This study indicates clear effects of shade-tree presence on nutrient availability at the micro-scale, management of which is critical for stability of coffee agroforestry systems.

Shade tree incorporation is beneficial in coffee cropping systems under sub-optimal conditions. This study was performed in lowland Costa Rica, at a 12-year-old experimental coffee farm. The main objective was to compare the effect of a nitrogen fixing shade tree, Erythrina poeppigiana, on nutrient availability in the rhizosphere of coffee under conventional fertilization. Accumulation of nutrients (mineral N, available P, and exchangeable base cations) in rhizosphere relative to bulk soil was greater under shade than full sun. Low nitrate availability in rhizosphere soil of full sun coffee was explained by root-induced acidification relative to bulk soil, as abundance of ammonia-oxidizing bacteria (AOB), which mediate nitrification, were positively correlated with pH. Organic fertilization enhanced AOB abundance and altered soil bacterial community structure relative to conventional fertilization. This study indicates clear effects of shade-tree presence on nutrient availability at the micro-scale, management of which is critical for stability of coffee agroforestry systems.

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京都大学 / 新制・論文博士 / 博士(地球環境学) / 乙第13493号 / 論地環博第16号 / 新制||地環||44(附属図書館) / 京都大学大学院地球環境学舎地球環境学専攻 / (主査)教授 舟川 晋也, 教授 西前 出, 准教授 真常 仁志, 教授 樋口 浩和 / 学位規則第4条第2項該当 / Doctor of Global Environmental Studies / Kyoto University / DFAM

In tropical seascapes, coral reefs often exist in proximity to marine vegetated habitats such as seagrass, mangroves, and macroalgae. This habitat mosaic offers the possibility for connection and exchange of both organisms and nutrition between habitats, mediated by biological and physical processes. This dissertation examines flows of organisms and nutrition between coral reefs and tropical vegetated habitats in the central Red Sea through 3 different mechanisms: 1) Use of multiple habitat types by tropical marine fishes, 2) Transport of algal material to coral reefs via the foraging behavior and movements of herbivorous fishes, and 3) Physical flow of water between coastal habitats. The results of this thesis suggest that coastal tropical habitats maintain a variety of ecological links at different spatial and temporal scales. A large fraction (36%) of fish species found on coral reefs are also found in at least one marine vegetated habitat in the central Red Sea, with many species mainly living in vegetated habitats as juveniles. This demonstrates the value of mangrove, seagrass, and macroalgae habitats to coral reef fishes, and suggests that many species make ontogenetic migrations between reef and non-reef habitats through their lives. Two species of herbivorous reef fishes (Naso elegans and N. unicornis) were found on coral reefs with algae in their guts which likely originated from nearby Sargassum-dominated macroalgae canopies, representing a fish-mediated, cross-habitat flux of nutrition from macroalgae habitats to coral reefs. Finally, we used a combination of remote sensing, a dye tracer study, and in-water measurements to observe water movement from shallow seagrass and mangrove habitats to nearby lagoon and coral reef habitats. Water exiting seagrass and mangrove habitats had altered concentrations of various nutrients (such as increased particulate organic carbon or decreased dissolved nutrients), suggesting that Red Sea mangroves and seagrasses change nutrient concentrations in water and the movement of water from these habitats to coral reefs could supply reefs with an allochthonous source of nutrition. These various linkages, controlled by a range of physical and biological processes, highlight the interconnected nature of tropical coastal ecosystems, and thereby the need to conserve whole habitat mosaics in the pursuit to protect coral reefs and maintain healthy and functioning coastal ecosystems.