The demands for copper and rare earth elements (REEs) in the U.S. will keep rising due to their applications in green energy technologies. Meanwhile, copper production in the U.S. has been declining over the past five years due to the depletion of high-grade ore deposits. The situation for REEs is worse; there is no domestic supply chain of REEs in the U.S. since the demise of Molycorp, Inc. in 2016. Studies have shown that the rejected materials from copper and coal processing plants contain significant amounts of valuable metals. As such, this rejected material can be considered as potential secondary sources for extracting copper and REEs, which may help combat future supply risks for the supply of copper and REEs in the U.S. However, the valuable mineral particles in these resources are ultrafine in size, which poses considerable challenges to the most widely used fine particle beneficiation technique, i.e., froth flotation. A novel technology called the Hydrophobic-Hydrophilic Separation (HHS) process, developed at Virginia Tech, has been successfully applied to recover fine coal in previous research. The results of research into the HHS process showed that the process has no lower particle size limit, similar to solvent extraction. Therefore, the primary objective of this research is to explore the feasibility of using the new process to recover ultrafine particles of coal, copper minerals, and rare earth minerals (REMs) associated with coal byproducts. In the present work, a series of laboratory-scale oil agglomeration and HHS tests have been carried out on coal with the objectives of assisting the HHS tests in pilot-scale, and the scale-up of the process. The knowledge gained from this study was successfully applied to solving the problems encountered in the pilot-scale tests. Additionally, a new and more efficient equipment known as the Morganizer has been designed and constructed to break up the agglomerates in oil phase as a means to remove entrained gangue minerals and water. The effectiveness of the new Morganizers has been demonstrated in laboratory-scale HHS tests, which may potentially result in the reduction of capital costs in commercializing the HHS process. Furthermore, the prospect of using the HHS process for processing high-sulfur coals has been explored. The results of this study showed that the HHS process can be used to increase the production of cleaner coal from waste streams. Application of the HHS process was further extended to recover the micron-sized REMs from a thickener underflow sample from the LW coal preparation plant, Kentucky. The results showed that the HHS process was far superior to the forced-air flotation process. In one test conducted during the earlier stages of the present study, a concentrate assaying 17,590 ppm total REEs was obtained from a 300 ppm feed. In this test, the Morganizer was not used to upgrade the rougher concentrate due to the lack of proper understanding of the fundamental mechanisms involved in converting oil-in-water (o/w) Pickering emulsions to water-in-oil (w/o) Pickering emulsions. Many of the studies has, therefore, been focused on the studies of phase inversion mechanisms. The results showed that phase inversion requires that i) the oil contact angles (θo) of the particles be increased above 90o, ii) the phase volume of oil (ϕo) be increased, and iii) the o/w emulsion be subjected to a high-shear agitation. It has been found that the first criterion can be readily met by using a hydrophobicity-enhancing agent. These findings were applied to produce high-grade REM concentrates from an artificial mixture of micron-sized monazite and silica. Based on the improved understanding of phase inversion, a modified HHS process has been developed to recover ultrafine particles of copper minerals. After successfully demonstrating the efficacy and effectiveness of this process on a series of artificial copper ore samples, the modified HHS process was used to produce high-grade copper concentrates from a series of cleaner scavenger tails obtained from operating plants. / Doctor of Philosophy / Recovery and dewatering of ultrafine particles have been the major challenges in the minerals and coal industries. Based on the thermodynamic advantage that oil droplets form contact angles about twice as large as those obtainable with air bubbles, a novel separation technology called the hydrophobic-hydrophilic separation (HHS) process was developed at Virginia Tech to address this issues. The research into the HHS process previously was only conducted on the recovery of ultrafine coal particles; also, the fundamental aspects of the HHS process were not fully understood, particularly the mechanisms of phase inversion of oil-in-water emulsions to water-in-oil emulsions. As a follow-up to the previous studies, emulsification tests have been conducted using ultrafine silica and chalcopyrite particles as emulsifiers, and the results showed that phase inversion requires high contact angles, high phase volumes, and high-shear agitation. These findings were applied to improve the HHS process for the recovery of ultrafine particles of coal, copper minerals, and rare earth minerals (REMs). The results obtained in the present work show that the HHS process can be used to efficiently recover and dewater fine particles without no lower particle size limits.