Systemic infection, major surgery, trauma and many other causes can lead to impaired organ function. Compensated shock is not detected by global hemodynamic and oxygen measurements, as they take no account for regional variations. Focus has therefore gradually turned from looking at systemic changes to selective investigations of regional blood flow and ischemia. This thesis presents a series of experiments evaluating new application and validation of various monitoring techniques. An experimental porcine model with anesthetized and invasively monitored animals was used. The circulatory interventions included endotoxin infusion (septic shock), aortic constriction and selective clamping of splanchnic arteries. The aim was to compare air with saline tonometry, to validate the intraperitoneal use of tonometry and to reexamine the use of endoluminal reflectance pulse oxymetry. To investigate the relative contributions of regional blood flow and detection of ischemia, measurements of hepatic venous oxygen saturation (ShvO2), lactate concentrations and PCO2 gap were used. Our findings support the use of air instead of saline as the preferred technique for tonometric measurements. With the intraperitoneal application of tonometry we gain more information on regional aspects of the splanchnic circulation, and it appears to be a reliable monitoring option for early detection of ischemia in the small intestine. Measurements of ShvO2 will give an overall reflection of the intestinal circulation. The sigmoid colonic pulse oximetry showed a non-linear response in relation to regional blood flow, and will therefore not be able to detect gradual changes in oxygen saturation. Determination of the regional to endtidal PCO2 gap might prove valuable for monitoring of the intestinal circulation. Because of sophisticated interactions between portal and hepatic arterial blood flow and hepatic compensation for regional ischemia, a combination of monitoring techniques might be needed. The results of this study will hopefully encourage clinical evaluation of intraperitoneal tonometry and endtidal PCO2 gap recordings for non-invasive, semi-continuous, trend monitoring of the splanchnic circulation.

Attempts to quantify the effects of ocean acidification and warming (OAW) on scleractinian corals provide a growing body of response measurements. However, placing empirical results into an ecological context is challenging, owing to variations that reflect both natural heterogeneity and scientific bias. This study addresses the heterogeneity of climate change induced changes in coral recruitment and calcification. To discern scientific bias and identify drivers of the remaining heterogeneity, 100 publications were analyzed using a combination of weighted mixed effects meta-regression and factorial effect size meta‑analysis. A linear model was applied to quantify the variation caused by differing stress levels across studies. The least squares predictions were then used to standardize individual study outcomes and effect size meta-analysis was performed on original and standardized outcomes separately. On average, increased temperature significantly reduces larval survival, while ocean acidification impedes settlement and calcification. Coral resistance to OAW is likely governed by biological traits (genera and life cycle stage), environmental factors (abiotic variability) and experimental design (feeding regime, stressor magnitude, and exposure duration). Linear models suggest that calcification rates are driven by carbonate and bicarbonate concentrations, which act additively with warming. Standardizing outcomes to linear model predictions proved useful in discerning strong sources of scientific bias. The approach used in this study can improve modelling projections and inform policy and management on changes in coral community structure associated with the expected future intensification of OAW.

Les zones côtières ne sont prises en compte dans les budgets globaux de CO2 atmosphérique que depuis peu. Il s’avère que bien qu’elles ne représentent globalement que de faibles superficies, les flux de carbone et de nutriments y sont très significatifs à l’échelle globale. On sait peu de chose sur le comportement des écosystèmes lagunaires vis-à-vis du CO2 et, encore moins des zones intertidales où les échanges avec l’atmosphère ont lieu alternativement avec l’eau et le sédiment. Les objectifs de cette étude ont été d’une part, d’établir le bilan de carbone échangé entre la lagune d’Arcachon, l’atmosphère et le milieu terrestre, et d’autre part de mettre en relation ces flux avec la production nette de l’écosystème (NEP) afin de mieux caractériser le statut métabolique de celle-ci ainsi que les facteurs environnementaux clés. Pour cela, nous avons mis en place pour la première fois et à différentes saisons et stations, des mesures directes de flux de CO2 par Eddy Corrélation, une méthode fonctionnant en continu pendant l’immersion et l’émersion. En parallèle, les apports de carbone terrestre sous ses différentes formes ont été quantifiés par un suivi annuel sur 9 rivières alimentant la lagune. L’export total de carbone par le bassin versant à travers les eaux de surface des rivières est estimé à 116 t C km-2 an-1 dont 39% est exporté à la lagune sous forme organique dissoute (DOC) du fait de la prédominance de podzols dans le bassin versant. La forte minéralisation de la matière organique terrestre dans les sols et eaux souterraines sursature largement les eaux en CO2 et l’export sous forme de carbone inorganique dissoute (DIC) représente environ 21%. La formulation d’un modèle mathématique, le « StreamCO2-DEGAS », basé sur les mesures de pCO2, de concentrations et de compositions isotopiques en DIC a permis de montrer que 43% de l’export total de carbone était dégazé sous forme de CO2 depuis les rivières vers l’atmosphère, réduisant alors le flux net entrant dans la lagune à 66 t C km-2 an-1. Concernant la mesure de flux verticaux, l’analyse cospectrale ainsi que les résultats obtenus en adéquation avec les contrôles physiques et biologiques aux différentes échelles tidale, diurne et saisonnières, ont permis de valider la méthode de l’Eddy Covariance en zone intertidale. Sur l’ensemble de la période de mesures, les flux de CO2 étaient faibles, variant entre -13 et 19 µmol m-2 s-1. Des puits de CO2 atmosphérique à marée basse le jour ont été systématiquement observés. Au contraire, pendant l’immersion et à marée basse la nuit, des flux positifs ou négatifs ou proche de zéro ont été observés suivant la saison et la station étudiées. L’analyse concomitante des flux de CO2 et des images satellites du platier à marée basse le jour a clairement permis de discriminer l’importance relative des deux cycles métaboliques distincts des principaux producteurs primaires avec (1) les herbiers de Zostera noltii à cycle annuel long, dominant la NEP en été et en automne à la station la plus centrale et (2) les communautés microphytobenthiques, dominant la production primaire brute (PPB) au printemps à la même station et en automne au fond du bassin. Un recyclage rapide de cette production durant l’immersion et l’émersion a aussi clairement été mis évidence. Au vue des différents résultats, la technique d’Eddy Covariance utilisée en zone intertidale laisse envisager d’intéressantes perspectives en termes de connaissances sur les budgets de carbone et les processus écologiques et biogéochimiques dans la zone côtière. / The coastal zone is only taken into account since recently in global carbon budgeting efforts. Although covering globally modest surface areas, carbon and nutrient fluxes in the coastal zone appear significant at the global scale. However, little is known about the CO2 behaviour in lagoons and even less in intertidal zones where exchanges with the atmosphere occur alternatively with the water and the sediment. The purposes of this work are, on one hand, to establish the carbon budget between the Arcachon lagoon, the atmosphere and the terrestrial watershed and on the other hand, to link these fluxes with the net ecosystem production (NEP) and better characterize its metabolic status along with the relevant environmental factors. For the first time, CO2 flux measurements by Eddy Correlation have been carried out at different seasons and stations in the tidal flat. In parallel, the total terrestrial carbon export from river waters has been quantified throughout a complete hydrological cycle in nine watercourses flowing into the lagoon. The total carbon export from the watershed through surface river waters is estimated at 116 t C km-2 yr-1 on which 39% is exported to the lagoon as dissolved organic carbon (DOC) owing to the predominance of podzols in the watershed. Intense organic matter mineralization in soils and groundwaters largely over-saturate river waters in CO2 on which export accounts for 21% as dissolved inorganic carbon (DIC). The mathematical “StreamCO2-DEGAS” model formulation based on water pCO2, DIC concentrations and isotopic composition measurements permits to show that 43% of the total carbon export was degassed as CO2 from the riverine surface waters to the atmosphere, lowering then this latter to 66 t C km-2 yr-1. With respect to the CO2 flux measurements in the lagoon, cospectral analysis and the well accordance of results with physical and biological controls at the tidal, diurnal and seasonal time scales permit to validate the Eddy Correlation technique over tidal coastal zone. CO2 fluxes with the atmosphere, during each period, were generally weak and ranged between -13 and 19 µmol m-2 s-1. Low tide and daytime conditions were always characterized by an uptake of atmospheric CO2. In contrast, during the immersion and during low tide at night, CO2 fluxes where either positive or negative, or close to zero, depending on the season and the site. The concomitant analysis of CO2 fluxes with satellite images of the lagoon at low tide during the day clearly discriminate the relative importance of the two distinct metabolic carbon cycling involving the main primary producers, i.e. (1) the Zostera noltii seagrass meadow predominance on the NEP in autumn and summer in the more central station, with an annual cycling and (2) the microphytobenthos community predominance on the gross primary production (GPP) in spring at the same station and in autumn in the inner part of the bay where a rapid carbon cycling during the immersion and the emersion was clearly highlighted. The different results obtained with the Eddy Correlation technique over tidal flats opens interesting perspectives on the knowledge of the carbon budget and the biogeochemical and ecological processes within the coastal zone.