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Petal diagrams of knots are projections of knots to the plane such that the diagram has exactly one crossing. Petal diagrams offer a convenient and combinatorial way of representing knots via their associated petal permutation. In this thesis we study the fundamental group and Seifert surfaces of knots in petal form. Using the Seifert-Van Kampen theorem, we give a group presentation of the fundamental group of the knot complement of a knot in petal form. We then discuss Seifert surfaces and use decomposition diagrams to represent the Seifert surfaces of knots in petal form. We finally give an algorithm to produce a set of decomposition diagrams for a spanning surface of a knot in petal form and prove that for incompressible surfaces such decomposition diagrams are unique up to perturbation moves.

Plant microRNAs have been shown to have important roles in regulating diverse processes ranging from reproductive development to stress response. In the first two chapters, I focus on miRNA diversity in Aquilegia studying both anciently evolved broadly conserved and rapidly evolving species specific miRNAs. In chapter one, I utilize Aquilegia's critical phylogenetic position between the well developed models Arabidopsis thaliana and Oryza sativa to study the evolution of ancient miRNAs across the angiosperms. In chapter two, I utilize smallRNA high-throughput sequencing to annotate Aquilegia specific miRNAs and, in the process, uncover the novel regulation of a floral homeotic gene by an Aquilegia-specific miRNA. In chapter three, I look at the tissue specific development of miRNA regulation in the bioenergetically relevant model organism Populus trichocarpa. High-throughput smallRNA sequencing from four diverse tissue sets including leaves, xylem, mechanically treated xylem, and pooled vegetative and reproductive tissues were analyzed, revealing a total of 155 previously unannotated miRNAs, most of which are P. trichocarpa specific. Expanding on my work with the petal identity pathway, I turned a broader analysis of Aquilegia petal spurs. Petal spurs are the distinguishing characteristic of Aquilegia and are argued to be a key innovation in the adaptive radiation of the genus. In the fourth chapter, I explore the cellular basis of extreme spur length diversity in the genus and find that a single parameter, cell shape, can explain this morphological range. Next, I seek to describe the cellular patterns that give rise to a spur primoridia from an initially flat laminar petal and find that spur initiation is characterized by concentrated, prolonged, and oriented cell divisions. Inspired by this quantitative analysis of growth, chapter five looks at the mechanisms of shape change in cucumber tendrils. I find that anisotropic contraction of a multi-layered gelatinous fiber ribbon explains coiling in cucumbers. Surprisingly, we discover that tendrils display twistless-overwinding when pulled and exhibit an unforeseen force-extension response as a result. These results provide the design basis for twistless springs with tunable mechanical responses and serve as a clear example of how the biological systems can inspire applied mechanical designs.

Allopolyploids are formed by interspecific hybridization and whole genome duplication, with the resulting organism contains multiple distinct subgenomes in one nucleus. Subgenomic interactions result in massive genetic and epigenetic reconstruction, contributing to variable phenotypic traits noted in newly formed allopolyploids. To better understand these mechanisms in the context of molecular biology, evolution, and plant breeding, plant biologists study the model organism Brassica napus (farmed as canola or oilseed rape). With white-flowering and yellow-flowering progenitors, flower color phenotype of B. napus presents an opportunity to examine subgenomic interactions. CAROTENOID CLEAVAGE DIOXYGENASE 4 (CCD4) is known to play a major role in determining flower color phenotype of carotenoid-synthesizing angiosperms. Here, we investigate the genetic and epigenetic role of CCD4 orthologs and their role in flower color phenotype of B. napus.

The influence of pollinators on the evolution of flower morphology has been extensively explored. Yet, the effect of other ecological factors, such as genetic drift, environmental filtering, and allometric constraints, gained less attention. In this study, we addressed the importance of those drivers in a predominantly selfing species. 400 worldwide Arabidopsis thaliana accessions were gathered and grown in semi-controlled climatic settings to explore the association between flower organ size, genotypes, and habitats. In our dataset, petal area was the most variable trait. Petal size was phenotypically and genetically correlated with other flowering structures, but no genetic allometry constraints were found to affect petal size evolution. The negative correlation of petal size with fitness and the traces of selective constraints in petal associated genes suggest that petal size is currently under selection in this species. We found paucity of genotypes harbouring large petals at low suitability regions, which points to the presence of environmental filtering. The novelty of this project relies on the pluralistic integration of factors studied and highlights the role of the climate on flower size evolution. Our results suggest that resource allocation is an important driver of flower size evolution in self-fertilising species but that its effect is largely determined by local environmental pressures.

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Afin de protéger leurs systèmes de détection de l'impulsion électromagnétique géante générée par l'interaction du laser PETAL avec sa cible, les diagnostics de PETAL seront équipés de détecteurs passifs. Pour les ensembles SEPAGE et SESAME, une combinaison d'Imaging Plates (IP) et de couches de protection de matériaux de grand numéro atomique sera utilisée, qui permettra: 1) d'assurer que la réponse des détecteurs sera indépendante de son environnement mécanique proche dans les diagnostics et donc homogène sur toute la détection, 2) de blinder les détecteurs contre les photons de haute énergie produits dans la cible de PETAL. Dans le travail présenté ici, nous avons réalisé des expériences d'étalonnage avec les IPs auprès d'installations générant des électrons, des protons ou des ions, dans le but de couvrir le domaine en énergie cinétique de la détection des particules chargées de PETAL, de 0.1 à 200 MeV. L'introduction a pour but de décrire les méthodes et outils utilisés au cours de cette étude. Le second chapitre présente les résultats de deux expériences réalisées avec des électrons dans le domaine d'énergie cinétique [5-180] MeV. Le troisième chapitre décrit une expérience et ses résultats avec les protons entre 80 et 200 MeV étaient envoyés sur nos détecteurs. Le quatrième chapitre est consacré à une expérience utilisant des protons et des ions entre1 et 22 MeV en énergie de protons et dont l'objectif était l'étude de détecteurs et le test du démonstrateur de SEPAGE. Nous avons utilisé GEANT4 pour l'analyse de nos données et prédire la réponse de nos détecteurs dans le domaine 0.1 à 1000 MeV. / In order to protect their detection against the giant electromagnetic pulse generated by the interaction of the PETAL laser with its target, PETAL diagnostics will be equipped with passive detectors. For SESAME and SEPAGE systems, a combination of imaging plate (IP) detectors with high-Z material protection layers will be used to provide additional features such as: 1) Ensuring a response of the detector to be independent of its environment and hence homogeneous over the surface of the diagnostics; 2) Shielding the detectors against high-energy photons from the PETAL target. In this work, calibration experiments of such detectors based on IPs were performed at electron and proton facilities with the goal of covering the energy range of the particle detection at PETAL from 0.1 to 200 MeV. The introduction aims at providing the reader the methods and tools used for this study. The second chapter presents the results of two experiments performed with electrons in the range from 5 to 180 MeV. The third chapter describes an experiment and its results, where protons in the energy range between 80 and 200 MeV were sent onto detectors. The fourth chapter is dedicated to an experiment with protons and ions in the energy range from 1 to 22 MeV proton energy, which aimed at studying our detector responses and testing the demonstrator of the SEPAGE diagnostic. We used the GEANT4 toolkit to analyse our data and compute the detection responses on the whole energy range from 0.1 to 1000 MeV.

<p>This thesis addresses the development and implementation of an experimental methodology for turbine rotors which enables experiments to be performed in the stationary frame. This method enables measurements with increased spatial resolution and reduced probe blockage effects while also reducing the cost and complexity of the experimental apparatus. Adding this experimental method to the turbine designer’s toolbox will enable more rapid design evaluation and iteration, resulting in faster and less expensive development cycles for new turbine designs. To demonstrate the viability of this new methodology it has been used to evaluate a family of high-lift, high-diffusion turbine geometries in a rainbow ring in the Big Rig for Aerothermal Stationary Turbine Analysis (BRASTA) facility at Purdue University.</p>

This paper explores the contemporary reader´s fascination with the Victorian period focusing on Michel Faber´s neo-Victorian novel The Crimson Petal and the White (2002). By comparing and contrasting various literary elements that link the Victorian novel to contemporary neo-Victorian fiction it simultaneously shows the similarities and differences between the nineteenth-century Victorian sensorium and that of the present day. It puts particular emphasis on the sensory perceptions of vision and smell, since those two senses are the most prominent ones in Victorian and neo-Victorian fiction and they are also regarded as extremes on the sensory scale. The nineteenth-century urban hygiene campaign transformed, in particular, the perception of olfaction. This study concludes that our contemporary society bears many similarities to the Victorian period as a society of great change. The renewed interest in the Victorian signifies the twenty-first century reader´s desire for an idealized world set in another time, which yet appears familiar and recognizable. Neo-Victorian fiction thus functions as a means of knowing both your heritage and finding your own place in the present day. The sensory perception of foremost smell is part of our cultural heritage and thus the neo-Victorian novel mirrors the deo-Victorian concept.

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