This dissertation presents techniques of three-dimensional microscopy. First, an economical method of microscopic image formation that employs a raster-scanning laser beam focused on a sample, while non-imaging detector receives the scattered light is presented. The images produced by this method are analogous to the scanning electron microscopy with visible effects of shadowing and reflection. Compared to a conventional wide-field imaging system, the system allows for a greater flexibility, as the variety of optical detectors, such as PMT and position-sensitive quadrant photodiode can be used to acquire images. The system demonstrates a simple, low-cost method of achieving the resolution on the order of a micron. A further gain in terms of resolution and the depth of focus by using Bessel rather than Gaussian beams is discussed. Then, a phase-imaging technique to quantitatively study the three-dimensional structure of reflective and transmissive microscopic samples is presented. The method, based on the simultaneous dual-wavelength digital holography, allows for higher axial range at which the unambiguous phase imaging can be performed. The technique is capable of nanometer axial resolution. The noise level, which increases as a result of using two wavelengths, is then reduced to the level of a single wavelength. The method compares favorably to software unwrapping, as the technique does not produce non-existent phase steps. Curvature mismatch between the reference and object beams is numerically compensated. The 3D images of porous coal samples and SKOV-3 ovarian cancer cells are presented.

This dissertation presents a quantitative phase imaging microscopy technique that combines phase-shifting interferometry with multi-wavelength optical phase unwrapping. The technique consists of a Michelson-type interferometer illuminated with any of three types of light sources; light emitting diodes, laser diodes and a ring dye laser. Interference images are obtained by using a 4-frame phase shifting method, and are combined to calculate the phase of the object surface. The 2π ambiguities are removed by repeating the experiment combining two and three different wavelengths, which yields phase images of effective wavelength much longer than the original. The resulting image is a profile of the object surface with a height resolution of several nanometers and range of several microns. To our knowledge, this is the first time that a three wavelength optical phase unwrapping method with no amplified phase noise has been presented for fullframe phase images. The results presented here are divided into three main categories based on the source of illumination; light emitting diodes, laser diodes and a ring dye laser. Results for both two-wavelength optical unwrapping and three-wavelength optical unwrapping techniques are demonstrated. The interferographic images using broadband sources such as light emitting diodes are significantly less affected by coherent noise compared to images obtained using lasers. Our results show that the three wavelength optical phase unwrapping can also be effectively applied to unwrap phase images obtained using coherent light sources such as lasers and laser diodes, without amplifying phase noise in the final phase image. We have successfully shown that our multi-wavelength phase-shifting technique extends the range free of 2π ambiguities in the phase map without using conventional computation intensive phase unwrapping methods. This phase imaging technique can be used to measure physical thickness or height of both biological and other microscopic samples, with nanometer axial resolution. An added advantage of the multi-wavelength optical phase unwrapping technique is that the beat wavelength can be tailored to match height variations of specific samples.

<p>In the human body, turbulent flow is associated with many complications. Turbulence typically occurs downstream from stenoses and heart valve prostheses and at branch points of arteries. A proper way to study turbulence may enhance the understanding of the effects of stenoses and improve the functional assessment of damaged heart valves and heart valve prostheses.</p><p>The methods of today for studying turbulence in the human body lack in either precision or speed. This thesis exploits a magnetic resonance imaging (MRI) phenomenon referred to as signal loss in order to develop a method for estimating turbulence intensity in blood flow.</p><p>MRI measurements were carried out on an appropriate flow phantom. The turbulence intensity results obtained by means of the proposed method were compared with previously known turbulence intensity results. The comparison indicates that the proposed method has great potential for estimation of turbulence intensity.</p>

Magnetic resonance imaging nowadays supplies a noninvasive method in clinical applications. For tetralogy of Fallot (TOF) patients, after undergoing clinical operation, their cardiac anatomy still cannot supply sufficient blood flow in the pulmonary arteries with respect to the normal. In this study, we use phase contrast MR imaging to evaluate of regurgitation and turbulence of flow in pulmonary arteries after repair of TOF. We use parameters such as coefficient of variance (CV), regurgitant fraction (RF), and normalized area variation (NAV) to analyze the difference between repaired patients and normal controls. Our result also shows that CV and regurgitant fraction have loose relation. This study may provide more information to help doctors in clinical diagnosis. In the meanwhile, another three parameters were used to evaluate patients and normal persons. We use windkessel volume to see the difference of flow volume between inlet and outlet in the pulmonary arteries. We use pulse wave velocity (PWV) to discuss the propagating velocity of pressure wave on the vascular wall. We use pulmonary vascular resistance (PVR) to analyze the resistance of blood wall. PWV and PVR may lose information by means of insufficient points in a cardiac cycle, but the result may still be a kind of reference.

This Thesis describes the development of an electron-impact microfocus x-ray source and its application for phase-contrast imaging. The source is based on a novel, liquid-jet target concept. Stable and continuous operation can be achieved at substantially higher electron-beam power densities than conventional solid target based systems. The maximum x-ray brightness can potentially be increased by a factor of 10-1000, which would provide significantly improved performance in applications such as imaging. In order to reach the high x-ray brightness, comparable performance from the electron gun is needed. A LaB6-cathode-based electron gun is analyzed in terms of achievable e-beam brightness and beam quality and is found capable to deliver power densities in the 10-100 MW/mm2 range using optimized electro-optics. A proof-of-principle microfocus source has been developed. Experiments show that the liquid-metal-jet target can be operated at more than an order of magnitude higher e-beam power densities than modern solid-metal targets. This brightness enhancement has been utilized to acquire in-line phase-contrast images of weakly absorbing objects. The source potentially enables the application of high-resolution phase-contrast x-ray imaging with short exposure times in clinics and laboratories. Different liquid-jet-target materials have been tested. The Sn-jet (Ka=25.3 keV) could be suitable for mammography, whereas the Ga-jet ((Ka=9.2 keV) may be utilized for x-ray diffraction studies. In addition, a non-metallic methanol jet has been the demonstrated in stable x-ray operation. All materials and compounds found in liquid form can, thus, potentially be used for electron-impact liquid-jet-target x-ray generation. Scaling to higher e-beam power density and x-ray brightness levels is discussed and is determined to be feasible. Potential difficulties, such as debris emission and instabilities of the x-ray emission spot, are investigated in some detail. Larger and/or faster jets could overcome the present limitations because of their inherently higher heat load capacities. Dynamic-similarity experiments show that liquid jets can in principle be operated in a stable manner at much higher speeds than previously shown. / QC 20100915

Phase-contrast magnetic resonance imaging (PC-MRI) is a powerful tool for measuring blood flow and has a wide range of cardiovascular applications. Simulation of PC-MRI from numerical flow data would be useful for addressing the data quality of PC-MRI measurements and to study and understand different artifacts. It would also make it possible to optimize imaging parameters prior to the PC-MRI measurements and to evaluate different methods for measuring wall shear stress. Based on previous studies a PC-MRI simulation tool was developed. An Eulerian-Lagrangian approach was used to solve the problem. Computational fluid dynamics (CFD) data calculated on a fix structured mesh (Eulerian point of view) were used as input. From the CFD data spin particle trajectories were computed. The magnetization of the spin particle is then evaluated as the particle travels along its trajectory (Lagrangian point of view). The simulated PC-MRI data were evaluated by comparison with PC-MRI measurements on an in vitro phantom. Results indicate that the PC-MRI simulation tool functions well. However, further development is required to include some of the artifacts. Decreasing the computation time will make more accurate and powerful simulations possible. Several suggestions for improvements are presented in this report.

In the human body, turbulent flow is associated with many complications. Turbulence typically occurs downstream from stenoses and heart valve prostheses and at branch points of arteries. A proper way to study turbulence may enhance the understanding of the effects of stenoses and improve the functional assessment of damaged heart valves and heart valve prostheses. The methods of today for studying turbulence in the human body lack in either precision or speed. This thesis exploits a magnetic resonance imaging (MRI) phenomenon referred to as signal loss in order to develop a method for estimating turbulence intensity in blood flow. MRI measurements were carried out on an appropriate flow phantom. The turbulence intensity results obtained by means of the proposed method were compared with previously known turbulence intensity results. The comparison indicates that the proposed method has great potential for estimation of turbulence intensity.

Based on many studies and experiments, blood flow patterns are associated with cardiovascular diseases and it usually is a sign of cardiovascular disease when the blood flow becomes unusual. Magnetic resonance (MR) imaging is a non-invasive medical technique and the characteristic of phase contrast can use to measure the flow velocity and patterns in vivo. As far as we know, for the cardiovascular of region of interest, 4D Flow-sensitive MRI technology is good at spatial coverage and temporal resolutions.It is easier for the researcher to analyze blood flow patterns in the clinical diagnosis by visualization processing. EnSight (CEI, USA), a kind of commercial software, is often used to do visualization processing of data of 4D Flow-sensitive MRI. However, before visualization of the data, several actions must be completed, such as ROI selection, correction or conversion of data, and etc. Therefore, our thesis hopes to develop a simple but practical user interface tool for 4D Flow-sensitive MRI data. From reading the file and ROI selection to correction and conversion of data as well as the visualization processing are completed by this tool. It provides researchers a rapid examination of data and analysis of blood flow patterns in the diagnosis.

Magnetic Resonance Imaging (MRI) provides noninvasive method in clinical application. For the patients of Tetralogy of Fallot underwent surgical correction,regurgitation and turbulence in blood flow may still present in pulmonary arteries.In this study,Phase Contrast MR Imaging will be used to quantitate,and to observe blood flow in after repair Tetralogy of Fallot (TOF) patients.We use 3 parameters,which are Coefficient of Variance (CV),Regurgitant Fraction (RF) and Net Flow analysis to analyze two situations of blood flow in patients¡¦ left pulmonary artery ¡Bright pulmonary artery and main pulmonary artery.We also compare normal subjects to patients in this experiment. The pulmonary circulation is the action of blood flow from right ventricular to main pulmonary artery then to left pulmonary artery and right pulmonary artery. We use three additional parameters: rPA / lPA flow ratio¡BPeak Velocities and Total Flow to observe the pulmonary blood flow. We use rPA / lPA flow ratio to identify the tendency of blood flow, with Peak Velocities to find out Peak Velocity in normal difference between patient.Meanwhile, the measurement of Total Flow is applied to observe the flow from main pulmonary artery to left and right pulmonary artery. We hope to use these parameters that can help doctors on clinical diagnosis.

Recently magnetic resonance imaging has become more and more popular in clinical applications. In clinical studies, the heart of the TOF patient has some congenital defects. These defects lead to insufficient blood flowing into the pulmonary arteries, rendering the necessary of repair for TOF patients. However, even after repair, the blood in pulmonary arteries still cannot flow in the same way with those of normal people. For this reason, studies on the flow behavior of pulmonary arteries in TOF patients would be valuable in clinical applications. In this study, we focus on the quantitative analysis of in-plane flow in branch pulmonary arteries (left and right pulmonary arteries) after repair of tetralogy of Fallot (TOF) by means of phase-contrast MR imaging. The regurgitation and turbulence were evaluated by coefficient of variance (CV) and regurgitant fraction. Vector map of in-plane flow was also included in order to facilitate the observation of flow patterns. Our result shows a positive correlation of CV and regurgitant fraction in terms of turbulence and regurgitation. Therefore, we conclude that CV and regurgitant fraction as well as vector maps may be helpful to quantitate in-plane flow for after repair of TOF patients, providing a more accurate analysis in clinical diagnosis.