In recent years, Weyl semi-metals have attracted a lot of interest in topological condensed matter, for instance for their significant potential application in quantum electronics, as the coupling between Weyl semi-metals and superconductivity, either intrinsically in the material or at the interface of a heterostructure, gives rise to a new type of topological superconductivity, which could be used to perform quantum computation operations free from decoherence. In this thesis, we investigate the low temperature magneto-transport properties of trigonal-PtBi2, a layered material, both in the presence of quantum confinement (exfoliated nano-structures) and in its absence (macro-structures). We report band structure calculations showing that trigonal-PtBi2 is a type-I Weyl semi-metal with multiple bands at the Fermi level. Shubnikov-de-Haas oscillations in macrostructures confirm the contribution to transport of carriers from multiple pockets, and magneto-transport measurements show an unusual angular dependence of the magnetoresistance with the field, which might be a manifestation of the large anisotropy of the topological band. We also report the existence of a large planar Hall effect in nano-structures, which is one of the predicted manifestations of Weyl physics. At very low temperature, below 1K, trigonal-PtBi2 becomes superconducting. We investigate the superconducting state in both macro- and nano-structures, and find that quantum confinement in nano-structures makes the superconductivity become two-dimensional. This result is confirmed by the characterization of a Berezinskii–Kosterlitz–Thouless (BKT) transition in nano-structures. This transition is very robust, as it occurs in nano-structures five times thicker than what had previously been reported for any BKT transitions in the literature. We also report on the impact of inhomogeneities on the superconducting transition.

The ability of human polymorphonuclear leukocytes (PMNL; neutrophils), to sense and move to sites of infection is essential for our defense against pathogens. Cell motility is critically dependent on a dynamic remodeling of morphology. The morphological polarization toward chemoattractants, such as N-formyl-Met-Leu-Phe (fMLF), is associated with temporary extension and stabilization of lamellipodia in the direction of movement. The underlying mechanisms of cell motility are, however, still not entirely elucidated. It is therefore an urgent task to extend the present experimental evidence to give solid basis for a comprehensive model. Here it is shown that nitric oxide (NO) stimulates the morphological response of neutrophils, most likely due to transient increases in [Ca2+]i, following addition of NO-donors. This will, hypothetically, activate gelsolin and other actin filament severing proteins, leading to a subsequent decrease in filamentous actin. The incapability to efficiently turnover the actin filament network then blocks all motile activity. It is also shown that N-formyl peptide receptors on polarized neutrophils accumulate non-uniformly towards regions involved in motility. It is suggested that neutrophils use the asymmetric receptor distribution for directional sensing and sustained migration. A model for lamellipodium extension, where water fluxes play a pivotal role is presented. It is suggested that water fluxes through water-selective aquaporin (AQP) channels, contribute to the propulsive force for formation of various membrane protrusions and, thus, cell motility. It is well known that small G proteins of the Rho family GTPases play important roles in the intracellular signaling underlying cell motility. In morphologically polarized neutrophils it is shown that Cdc42, Rac2 and RhoA display spatially distinct distributions, which allows for sequential chemoattractant stimulation of neutrophil motility. The specific localizations of Rac2, Cdc42 and RhoA relative to each other and filamentous actin and fMLF receptors support the hypothesized order of activation and regulation of neutrophil cell motility. In conclusion, the detailed analysis of motility-related issues presented here provide new data allowing further refinement of previous models of neutrophil motility.

Vibrio harveyi is a bioluminescent bacterium and the organism in which quorum sensing was discovered. It was recently found that a class of molecules, cyclic dipeptides, may be a new kind of quorum sensing signal that may affect other species in the genus. The purpose of this study was to determine if V. harveyi produced one of these molecules, cyclo(Phe-Pro) or cFP, and the effects it has on bioluminescence, growth and gene expression. Electrospray Mass Spectrometry was used to detect cFP, and it was found. While growth and gene expression were not significantly affected by cFP, bioluminescence was slightly induced at low concentrations. It appears that V. harveyi does not produce cFP and it does not significantly affect the luminescence quorum sensing controlled genes, and is most likely not a true signal, in V. harveyi.

Ca2+ is a universal and versatile intracellular messenger, regulating a vast array of biological processes due to variations in the frequency, amplitude, spatial and temporal dynamics of Ca2+ signals. Increases in cytosolic free Ca2+ concentration ([Ca2+]c) are due to influx from either an infinite extracellular Ca2+ pool or from the more limited intracellular Ca2+ stores. Stimulation of the endogenous muscarinic (M3) receptors of human embryonic kidney (HEK) cells with carbachol results in the activation of phospholipase C (PLC) and formation of inositol 1,4,5-trisphosphate (IP3), activation of IP3 receptors (IP3Rs), release of Ca2+ from the endoplasmic reticulum (ER), and activation of store-operated Ca2+ entry (SOCE). Lysosomes are the core digestive compartments of the cell, but their importance as signalling organelles is also now widely appreciated. Accumulating evidence indicates that lysosomal Ca2+ is important for their physiological functions. Lysosomal Ca2+ release triggers fusion during membrane trafficking and, through calmodulin, it regulates lysosome size. Luminal Ca2+ is critical for regulation of lysosomal biogenesis and autophagy during starvation through the transcription factor, TFEB. Furthermore, aberrant lysosomal Ca2+ is associated with some lysosomal storage diseases. Lysosomes in mammalian cells have long been suggested to accumulate Ca2+ via a low-affinity Ca2+-H+ exchanger (CAX). This is consistent with evidence that dissipating the lysosomal H+ gradient increased [Ca2+]c and decreased lysosomal free [Ca2+], and with the observation that lysosomal Ca2+ uptake was followed by an increase in pHly. Furthermore, heterologous expression of Xenopus CAX in mammalian cells attenuated carbachol-evoked Ca2+ signals. However, there is no known CAX in mammalian cells, and so the identity of the lysosomal Ca2+ uptake pathway in mammalian cells is unresolved. Using mammalian cells loaded with a fluorescent Ca2+ indicator, I show that dissipating the pHly gradient pharmacologically or by siRNA-mediated knockdown of an essential subunit of the H+ pump, increases the amplitude of IP3-evoked cytosolic Ca2+ signals without affecting those evoked by SOCE. A genetically encoded low-affinity Ca2+ sensor expressed on the lysosome surface reports larger increases in [Ca2+]c than the cytosolic sensor, but only when the Ca2+ signals are evoked by IP3R rather than SOCE. Using cells expressing single IP3R subtypes, I demonstrate that each of the three IP3R subtypes can deliver Ca2+ to lysosomes. I conclude that IP3Rs release Ca2+ within near-lysosome microdomains that fuel a low-affinity lysosomal Ca2+ uptake system. The temporal relationship between the increase in pHly and reduced Ca2+ sequestration suggests that pHly affects the organization of the microdomain rather than the Ca2+ uptake mechanism. I show that abrogation of the lysosome H+ gradient does not acutely prevent uptake of Ca2+ into lysosomes, but disrupts junctions with the ER where the exchange of Ca2+ occurs. The dipeptide, glycyl-L-phenylalanine 2-naphthylamide (L-GPN), is much used to disrupt lysosomes and release Ca2+ from them. The mechanism is widely assumed to require cleavage of GPN by cathepsin C, causing accumulation of amino acid residues, and osmotic lysis of lysosomal membranes. I show, using LysoTracker Red and Oregon Green-dextran to report pHly, that L-GPN is effective in HEK cells lacking functional cathepsin C, following CRISPR-Cas9-mediated gene disruption. Furthermore, D-GPN, which is resistant to cleavage by cathepsin C, is as effective as L-GPN at increasing pHly, and it is similarly effective in cells with and without cathepsin C. L-GPN and D-GPN increase cytosolic pH, and the effect is similar when the lysosomal V-ATPase is inhibited with bafilomycin A1. This is not consistent with GPN releasing the acidic contents of lysosomes. I conclude that the effects of GPN on lysosomes are not mediated by cathepsin C. Both L-GPN and D-GPN evoke Ca2+ release, the response is unaffected by inhibition or knock-out of cathepsin C, but it requires Ca2+ within the ER. GPN-evoked increases in [Ca2+]c require Ca2+ within the ER, but they are not mediated by ER Ca2+ channels amplifying Ca2+ release from lysosomes. GPN increases [Ca2+]c by increasing pHcyt, which then directly stimulates Ca2+ release from the ER. I conclude that physiologically relevant increases in pHcyt stimulate Ca2+ release from the ER independent of IP3 and ryanodine receptors, and that GPN does not selectively target lysosomes. I conclude that all three IP3R subtypes selectively deliver Ca2+ to lysosomes, and that the low pH within lysosomes is required to maintain the junctions between ER and lysosomes, but not for lysosomal Ca2+ uptake. I suggest that GPN lacks the specificity required to allow selective release of Ca2+ from lysosomes.

The main aim of this thesis is to develop a library for integrating fully homomorphic encryption-based computations on a standard database. The fully homomorphic encryption is an encryption scheme that allows functions to be performed directly on encrypted data without the requirement of decrypting the data and yields the same results as if the functions were run on the plaintext. This implementation is a promising solution for preserving the privacy of the health care system, where millions of patients’ data are stored. The personal health care tools gather medical data and store it in a database. Upon importing this library into the database, the data that is being entered into the database is encrypted and the computations can be performed on the encrypted data without decrypting.

Thesis (Ph. D.)--University of Alabama at Birmingham, 2006. / Title from first page of PDF file (viewed Feb. 14, 2008). Includes bibliographical references.

<p>In this work, a simple, less time consuming electrochemical method in the form of an electrochemical sensor has been developed for the detection of PAHs. The sensor was fabricated by the deposition of silver-gold (1:3) alloy nanoparticles (Ag-AuNPs) on ultrathin overoxidized polypyrrole (PPyox) film which formed a PPyox/Ag-AuNPs composite on glassy carbon electrode (PPyox/Ag-AuNPs/GCE). The silver-gold alloy nanoparticles deposited to form the composite were chemically prepared by simultaneous reduction of silver nitrate (AgNO3) and chloroauric acid (HAuCl4) using sodium citrate and characterized by UV-visible spectroscopy technique which confirmed the homogeneous formation of the alloy nanoparticles.</p>

<p>In this work, a simple, less time consuming electrochemical method in the form of an electrochemical sensor has been developed for the detection of PAHs. The sensor was fabricated by the deposition of silver-gold (1:3) alloy nanoparticles (Ag-AuNPs) on ultrathin overoxidized polypyrrole (PPyox) film which formed a PPyox/Ag-AuNPs composite on glassy carbon electrode (PPyox/Ag-AuNPs/GCE). The silver-gold alloy nanoparticles deposited to form the composite were chemically prepared by simultaneous reduction of silver nitrate (AgNO3) and chloroauric acid (HAuCl4) using sodium citrate and characterized by UV-visible spectroscopy technique which confirmed the homogeneous formation of the alloy nanoparticles.</p>

Magister Scientiae - MSc / Polyaromatic hydrocarbons (PAHs) are ubiquitous environmental pollutants that have been shown to be teratogenic, mutagenic and carcinogenic and pose serious threats to the health of aquatic and human life. Several methods have been developed for their determination such as immunoassay, gas chromatography and high performance liquid chromatography (HPLC) in combination with fluorescence or absorbance detection. However, these methods are known to manifest underlying disadvantages such as complicated pretreatment, high costs and time consuming processes. In this work, a simple, less time consuming electrochemical method in the form of an electrochemical sensor has been developed for the detection of PAHs. The sensor was fabricated by the deposition of silver-gold (1:3) alloy nanoparticles (Ag-AuNPs) on ultrathin overoxidized polypyrrole (PPyox) film which formed a PPyox/Ag-AuNPs composite on glassy carbon electrode (PPyox/Ag-AuNPs/GCE). The silver-gold alloy nanoparticles deposited to form the composite were chemically prepared by simultaneous reduction of silver nitrate (AgNO3) and chloroauric acid (HAuCl4) using sodium citrate and characterized by UV-visible spectroscopy technique which confirmed the homogeneous formation of the alloy nanoparticles. Transmission electron microscopy showed that the synthesized nanoparticles were in the range of 20-50 nm. The properties of the composite formed upon deposition of the nanoparticles on the PPyox film were investigated by electrochemical methods. The PPyox/Ag-AuNPs/GCE sensor showed strong catalytic activity towards the oxidation of anthracene, phenanthrene and pyrene, and was able to simultaneously detect anthracene and phenanthrene in a binary mixture of the two. The catalytic peak currents obtained from square wave voltammetry increased linearly with anthracene, phenanthrene and pyrene concentrations in the range of 3.0 x 10-6 to 3.56 x 10-4 M,3.3 x 10-5 to 2.83 x 10-4 M, 3.3 x 10-5 to 1.66 x 10-4 M and with detection limits of 0.169 μM, 1.59 μM and 2.70 μM, respectively. The PPyox/Ag-AuNPs/GCE sensor is simple, has antifouling properties and is less time consuming with a response time of 4 s. / South Africa

L'étude in situ des relations Soleil-Terre et plus généralement des environnements ionisés du système solaire, nécessite la mesure d'ondes qui se propagent dans un plasma magnétisé. A bord des observatoires spatiaux, la composante magnétique de ces ondes est obtenue à l'aide de magnétomètres à induction. La mesure des hautes fréquences (de quelques Hz à quelques 100 kHz) est réalisée par des magnétomètres Searchcoil tandis que celles des basses fréquences (de quelques 10 mHz à quelques Hz) et de la composante continue sont confiées aux magnétomètres Fluxgate. Cette thèse porte sur le développement d'un magnétomètre dont la bande de mesure s'étend du continu à plusieurs kiloHertz. On y présente un concept instrumental innovant reposant sur la mise en œuvre simultanée d'une mesure inductive et magnétorésistive du champ magnétique. Nous nous intéressons d'abord à la conception et à l'étude de capteurs à magnétorésistance anisotrope (AMR) et à magnétorésistance tunnel (TMR) dont les propriétés d'anisotropie sont contrôlées par couplage d'échange. Nous montrons ensuite comment ces magnétorésistances peuvent être intégrées à un magnétomètre Searchcoil dont le noyau ferromagnétique est mis à profit pour réaliser un concentrateur magnétique performant. Nous détaillons alors les différents aspects de la conception d'un magnétomètre hybride Searchcoil/Magnétorésistance répondant aux contraintes environnementales associées aux expériences spatiales ainsi que d'un outil original d'optimisation des performances, alliant un modèle par éléments finis à un algorithme de type génétique. Nous prouvons enfin la faisabilité du concept proposé en réalisant un premier prototype de magnétomètre hybride Searchcoil/Capteur PHE tri-axes et de son électronique de préamplification faible bruit. La sensibilité de ce prototype, testé en conditions réelles lors d'un tir de fusée scientifique, avoisine les 200 fT/sqrt (Hz) à 1 kHz et les 400 pT/sqrt (Hz) à 1 Hz.