The asymptomatic nature of chlamydial infection renders the differential diagnosis of acute and chronic infection difficult. An untreated Chlamydia trachomatis infection can become chronic, result in disease sequelae such as salpingitis and pelvic inflammatory disease (PID), and ultimately culminate in tubal occlusion and infertility. Diagnostic tests for C. trachomatis such as nucleic acid amplification testing (PCR), antigen detection and serological methods have variable performance capabilities with respect to sensitivity, specificity and stage of infection. The use of PCR as a diagnostic tool is somewhat limited, as specimen collection is routinely sampled from the lower genital tract; hence, infections in the fallopian tube where inflammatory damage is most significant, escape detection. Furthermore, PCR can only detect selected Chlamydia DNA sequences from readily accessible sites of the genital tract, and therefore cannot differentiate between acute and chronic infection. Other serological assays aim to discriminate the various stages of C. trachomatis infection through identification of key antigens. The efficacy of these assays however is impeded due to cross-reactivity between chlamydial species and the subsequent antibody response against the target antigen is not restricted to patients with a specific stage of infection. To identify antibody responses capable of differentiating various states of chlamydial infection, samples were collected from both men and women given the variability of immune responses between the two genders. Samples were assigned to a patient group according to infection status and then probed against protein extracts of HEp-2 cells infected with C. trachomatis serovar L2 and HEp-2 cells pre-treated with IFN-γ and infected with C. trachomatis serovar L2. (persistence cell culture) Serological analysis revealed the presence of five antigens (denoted bands A, B, C, D and M) which were shown to be differential between patient groups. Identification of bands B and C by N-terminal sequencing provided two possible candidates for each antigen, ie. CT727 and CT396 (band B) and CT157 and CT423 (band C). In contrast, band M which was unique to males was a PmpB (probable outer membrane protein B) fragment. The four target antigens (CT157, CT423, CT727 and CT396) were expressed as recombinant proteins using autoinduction media and were subsequently probed by both male and female sera to evaluate their diagnostic potential. Results showed that two chlamydial antigenic targets (CT157 and CT727) have the potential to discriminate between acute and chronic C. trachomatis infection. However, since only a small number of samples (n = 3) were used for this aspect of the study, the findings should simply be viewed as preliminary. In females, sensitivity and specificity values were derived using various combinations of the four target antigens into a panel format for the purpose of detecting chronic C. trachomatis infections. The preferred format was B + C with a sensitivity and specificity of 80% and 84% respectively. Using the IFN-γ-mediated persistence model, only two of the five antigenic targets were shown to be differentially expressed. PmpB in males and CT157 (the most likely band C candidate) in females were shown to be up-regulated to varying degrees in samples across the patient groups. We also demonstrated that no other chlamydial antigens are up-regulated during a persistent C. trachomatis infection. In conclusion, although combinations of bands A, B, C, D and M differentiate between male and female patient groups under normal chlamydial growth conditions, during IFN-γ-induced persistence, only bands C (CT157) and M (CT413 - PmpB) are up-regulated thus suggesting a potential role in chronic C. trachomatis infection.

Vibrio harveyi is a bioluminescent bacterium and the organism in which quorum sensing was discovered. It was recently found that a class of molecules, cyclic dipeptides, may be a new kind of quorum sensing signal that may affect other species in the genus. The purpose of this study was to determine if V. harveyi produced one of these molecules, cyclo(Phe-Pro) or cFP, and the effects it has on bioluminescence, growth and gene expression. Electrospray Mass Spectrometry was used to detect cFP, and it was found. While growth and gene expression were not significantly affected by cFP, bioluminescence was slightly induced at low concentrations. It appears that V. harveyi does not produce cFP and it does not significantly affect the luminescence quorum sensing controlled genes, and is most likely not a true signal, in V. harveyi.

Abstract Efficient production of biologically functional recombinant proteins is a cornerstone of modern biotechnological research. Laboratory-scale protein production is most commonly accomplished in simple shaking bioreactors such as shake flasks. However, productivity of these cultures is often severely limited by low biomass yield and non-optimal growth conditions regarding medium composition, pH and oxygen supply. In many cases, poor culture performance can constitute a major research bottleneck. This study aims to improve recombinant protein production in shaking Escherichia coli cultures by use of enzyme-controlled, fed-batch-like glucose feeding in a rich medium, and by investigating the effects of culture aeration on different aspects of protein production. The results show that the enzymatic fed-batch medium can provide higher cell densities, volumetric protein yields and, in some cases, improved product solubility or activity compared to traditionally used media. While these improvements could be obtained in ordinary shaking vessels, the results also demonstrate that cultivation in shake flasks with elevated aeration capacity can further improve cell density and volumetric productivity in the fed-batch medium. However, enhanced aeration may also have an adverse effect on the expression of certain proteins such as Fab antibody fragments. Maximum volumetric Fab yield was achieved under reduced aeration rates, and lower oxygen availability also contributed to substantially increased accumulation of periplasmically produced Fab fragments into extracellular medium. Hence modification of aeration conditions and medium composition can be used to control periplasmic/extracellular product localization as outlined in this study. Moreover, high aeration was detrimental to expression in a glycerol-based lactose autoinduction medium, but this strict dependency on aeration level could be mitigated and robustness of expression improved by an autoinduction medium based on the enzymatic glucose feeding as the supporting carbon source instead of glycerol. The results of this study can be utilized to improve volumetric productivity, protein solubility and control of product localization in small-scale protein production, as well as to facilitate robust and efficient high-throughput protein expression for such applications as structural and functional characterization. / Tiivistelmä Biologisesti aktiivisten vierasproteiinien tehokas tuottaminen on yksi bioteknologisen tutkimuksen kulmakivistä. Laboratoriomittakaavan proteiinituotto toteutetaan yleisimmin yksinkertaisissa ravistelubioreaktoreissa, kuten ravistelupulloissa. Näiden viljelmien tuottavuutta rajoittaa kuitenkin usein biomassan matala saanto sekä epäoptimaaliset olosuhteet kasvualustan koostumuksen, pH:n ja hapen suhteen. Monissa tapauksissa viljelmän heikko tuottavuus muodostaa tutkimukselle merkittävän pullonkaulan. Tämän tutkimuksen tavoite on parantaa vierasproteiinien tuottoa Escherichia coli –ravisteluviljelmissä hyödyntäen entsymaattisesti kontrolloitua, panossyöttökasvatusta jäljittelevää glukoosisyöttöä rikkaassa kasvualustassa, sekä selvittää ilmastuksen vaikutusta proteiinituoton eri osatekijöihin. Tulosten mukaan glukoosisyöttöön perustuva kasvualusta mahdollistaa korkeamman solutiheyden sekä proteiinituoton verrattuna tavallisimmin käytettyihin kasvualustoihin. Joissain tapauksissa myös proteiinin liukoisuus tai aktiivisuus voi parantua. Vaikka nämä edut pystyttiin saavuttamaan myös tavanomaisissa ravistelupulloissa, voidaan panossyöttökasvualustan solutiheyttä ja tuottoa tilavuutta kohti edelleen lisätä käyttämällä korkeamman ilmastustehokkuuden ravistelupulloja. Toisaalta tehostetun ilmastuksen havaittiin olevan mahdollisesti haitallista tiettyjen proteiinien, kuten Fab-vasta-ainefragmenttien, tuotolle. Fab-fragmenttien maksimaalinen tuotto saavutettiin ilmastustehokkuutta laskemalla. Lisäksi matalampi hapen saatavuus edisti periplasmaan ohjattujen Fab-fragmenttien kerääntymistä solunulkoiseen kasvualustaan. Näin ollen ilmastusolosuhteita ja kasvualustan koostumusta muokkaamalla voidaan vaikuttaa tuotteen lopulliseen sijoittumiseen. Korkean ilmastustehokkuuden havaittiin myös olevan haitallista proteiinituotolle glyserolipohjaisessa autoinduktiokasvualustassa. Tätä riippuvuutta ilmastuksen tasosta pystyttiin vähentämään ja autoinduktion luotettavuutta parantamaan käyttämällä kasvualustaa jossa hiililähteenä toimii glyserolin sijaan entsymaattinen glukoosisyöttö. Tutkimuksen tuloksia hyödyntäen voidaan parantaa vierasproteiinien saantoa, liukoisuutta ja periplasmisen/solunulkoisen kerääntymisen säätelyä, sekä mahdollistaa luotettava ja tehokas proteiinituotto viljelmien suurta lukumäärää vaativiin sovelluksiin, kuten proteiinien rakenteen ja toiminnan tutkimukseen.