Abstract The carbon and oxygen isotopes of planktonic foraminifera, faunal assemblage, and coarse fraction of trap materials were analyzed in this study. The sediment traps were deployed in two lacations. One was in the Kao-ping submarine canyon and the other was in the northern South China Sea. Variations of the individual concentrations from Kao-ping submarine canyon are small throughout the deployment interval except for the period when the Typhoon Chi-Te invaded southern Taiwan in July 2000. The results that benthic foraminifer abundances (#/g) are higher than that of planktonic foraminifera after typhoon invasion reflect the influence of particle settling by lateral transport. In addition, the major planktonic foraminifera found in canyon are Globigerinoides aequilateralis, Globigerinoides ruber, Globigerinoides sacculifer, and Neogloboquadrina dutertrei. At the same time, we also found Globigerina bulloides that usually lives in the high latitudes and cold temperature. It reveals the effect of nutrient supply along coastal region. The coarse fraction contents and foraminiferal abundances collected by the traps in the northern South China Sea are both increasing in January and March. It could be associated with the enhanced surface productivity. The planktonic foraminifera divided into two groups based on their preferrence. The G. bulloides and N. dutertrei live in cold environment while G. aequilateralis, G. ruber, G. sacculifer, and Pulleniatina obliquiloculata preferr warm areas. In this study, G. bulloides and N. dutertrei were found in January whereas G. aequilateralis, G. rubber, G. sacculifer, and P. obliquiloculata were mostly in March. The difference of carbon isotopes of planktonic foraminifera between species are distinct. Orbulina universa is the heaviest and G. ruber was the lightest. Foraminiferal d18O are depleted in October and enriched in January and March. It is suggested that sea surface temperature might be responsible for the variations of planktonic foraminiferal oxygen isotopes. Comparisons of foraminiferal d18O with the hydrographic data provide some informations. The results show that G. ruber lives in shallow water (~10m), G. sacculifer lives in 25m on average, and O. universa lives in deeper water layer (~70m) in northern South China Sea. Moreover, both the carbon isotopes and foraminiferal abundance of G. ruber show a negative correlation with the particles fluxes.