Increasing anthropogenic alterations propelled by a growing human population paired with ecological perturbations and climate change has amplified rates of disease transmission at the human-wildlife interface. While attention has focused primarily on diseases that cause high rates of morbidity and mortality, there is a dearth of research on more common, non-lethal “mild” infections. However, despite less obvious and immediate consequences, these infections still have long-term effects on both public health and the conservation of wildlife. Currently, disease research is primarily cross-sectional, with a lack of longitudinal studies, leading to an undervaluation of the dynamic nature of disease systems. In addition to pathogen monitoring, concurrently being able to measure immune system activation will help to clarify the effects of non-lethal diseases on host health and to provide further insights into life-history trade-offs. Here, I investigated malaria parasite (Plasmodium spp.) infections, a “mild” disease, in wild habituated chimpanzees (Pan troglodytes verus) residing in Taï National Park (TNP), Côte d'Ivoire. I used historical biological samples collected from non-human primates (including chimpanzees) and humans, as well as collected mosquitoes within their habitat. First, I identified longitudinal patterns of malaria parasite prevalence detected in chimpanzee faeces; next, I validated a biomarker of immune system activation, urinary neopterin, in wild chimpanzees; and lastly, within a larger ecological framework, I examined the interface of malaria parasite transmission between humans and non-human primates sharing a habitat. With a longitudinal study design, I found substantial intra- and inter-annual fluctuations in the faecal detection of malaria parasites across four non-consecutive sampling periods between 2004 and 2015. Peaks were observed during wet seasons—suggesting that environmental factors relating to vector abundance determine infection patterns. A higher prevalence was also detected in younger individuals, suggesting that the availability of susceptible hosts plays a role. With variations in parasite detection, similar trends should also be observed in health status. Urinary neopterin, an early inflammation marker of the non-specific immune response, increases during malaria parasite infections in humans and has been validated as a marker of immune system activation in laboratory and captive non-human primates. However, it was unclear whether it would be sensitive enough to provide a clear signal in mild diseases against the back-drop of co-infections commonly seen in wildlife. Therefore, we first needed to validate urinary neopterin as a biomarker of immune system activation during severe disease in wild animals. I measured urinary neopterin before, during, and after a severe respiratory outbreak and showed that levels corresponded to respiratory symptoms and predicted mortality. While urinary neopterin is sensitive enough to detect changes in immune system activation during severe disease, future research should still aim to validate its use in mild diseases, such as malaria. Finally, human-to-animal disease transmission is known to occur in TNP, with direct declines in chimpanzee populations observed that resulted from several outbreaks caused by human respiratory diseases. Given the zoonotic origin of malaria parasites in humans, I examined the genetic diversity of malaria parasites infecting humans and non-human primates sharing a habitat. Mosquitoes were also captured to identify potential vectors that may bridge transmission between host species. Only P. malariae was found in both humans and chimpanzees—however, the directionality of cross-species transmission would require a larger sample size to correctly assess. Additionally, no anopheline mosquitoes, the only known vector of mammalian malaria parasites, or mosquitoes positive for human- or great ape-specific malaria parasites were captured—suggesting that transmission events may be rare due to the sparsity of vectors in this region. This thesis shows that malaria epidemiology is a temporally and spatially diverse system that requires the use of longitudinal datasets and diverse sampling schemes. This thesis provides a baseline of data on which future malaria parasite research can build. Additionally, the validation of urinary neopterin will allow researchers to pursue questions on how mild diseases affect host health and to investigate questions relating to strategies and variations in life history trade-offs. This thesis is relevant for research on wildlife disease ecology, eco-immunology, and in the creation of pathogen and health surveillance programs.

Conselho Nacional de Desenvolvimento Científico e Tecnológico / O parasitismo é uma importante força seletiva em populações, assim como a competição e a predação. Os parasitos sanguíneos podem afetar a coloração da plumagem, a seleção sexual e o sucesso reprodutivo em aves. As aves da região Antártica têm sido mencionadas na literatura como livres de hemoparasitos. A Baía do Almirantado, na Ilha Rei George, Península Antártica, é a maior Baía da região, abrigando diferentes espécies de aves durante o período reprodutivo. Dentre elas, estão duas espécies de skuas, as mais frequentes da Antártica, skua-sub-antártica (Catharacta lonnbergi) e skua-polar-do-sul (C. maccormicki) e três espécies de pinguins, pinguim-antártico (Pygoscelis antarctica), pinguim-papua (P. papua) e pinguim-de-adélia (P. adeliae). Skuas e pinguins são aves que se dispersam durante o inverno austral, podendo ser potenciais reservatórios e transmissores de parasitos, embora resultados negativos de hemoparasitos tenham sido encontrados para diversas outras aves marinhas e também para a região Antártica. O objetivo do presente trabalho foi investigar a presença de hemoparasitos em pinguins e skuas antárticos na Baía do Almirantado. Amostras de lâminas de esfregaço sanguíneo e de sangue para análises moleculares de pesquisa de Plasmodium/Haemoproteus foram coletadas em dois períodos reprodutivos, de dezembro de 2010 a março de 2011 e de dezembro de 2011 a fevereiro de 2012. Um total de 185 amostras de aves foram coletadas, incluindo 120 pinguins e 65 skuas. Skuas foram tiveram resultados negativos para hemoparasitos. As três espécies de pinguins foram positivas para Plasmodium/Haemoproteus , via técnica molecular, incluindo dois P. papua,dois P. antarctica etrês P. adeliae. Apenas um indivíduo confirmado positivo pela técnica molecular, pertencente a P. papua, foi positivo utilizando a técnica de esfregaço sanguíneo, com diagnóstico de Plasmodium sp. Não houve diferença significativa entre indivíduos machos e fêmeas das espécies parasitadas, assim como entre adultos e filhotes. As aves parasitadas (n=7), foram categorizadas abaixo do peso (n=5) e acima do peso (n=2). O presente estudo é o primeiro a relatar hemoparasitos na região Antártica e também é o primeiro registro de presença de hemoprotozoários para as três espécies de pinguins analisadas. A ausência de hemoparasitos em aves antárticas tem sido justificada pela ausência de potenciais vetores na região. Portanto, é possível que os pinguins parasitados tenham adquirido a infecção durante a dispersão por ocasião do inverno austral. No entanto, skuas antárticas também são aves migratórias, que podem atingir regiões com potenciais vetores reconhecidos, mas nunca foram diagnosticadas com hemoparasitos, o que foi reforçado pelos resultados negativos do presente estudo. Nesse caso, acredita-se que skuas, podem ter um sistema imune competente ou que a ausência de hemoparasitos nessas aves seja justificada por confinamentos filogenéticos entre parasito-hospedeiro. Entretanto, pouco se sabe sobre a existência de vetores na Antártica, rotas migratórias das aves da região e especificidade parasito-hospedeiro. Os resultados inéditos encontrados no presente estudo devem, portanto, servir como ponto de partida para o entendimento das interações parasito-hospedeiro, de forma a contribuir para a preservação do ambiente antártico. / Parasitism is an important selective pressure in populations, as well as competition and predation. Blood parasites can affect the color of plumage, sexual selection and reproductive success in birds. Antarctic birds have been mentioned in literature absent of blood parasites. Admiralty Bay is located at King George Island, Antarctic Peninsula, and is the largest bay on the region, harboring different avian species during the reproductive period. Among them, are the two most common skuas of Antarctica, the brown-skua (Catharacta lonnbergi) and the south-polar-skua (Catharacta maccormicki), and tree penguins species, the Chinstrap (Pygoscelis antarctica), the Gentoo (P. papua) and the Adelie (P. adeliae). Skuas and penguins are seabirds that migrating during the southern winter, and may be potential reservoirs and transmitters of parasites. However, negative results of blood parasiteshave been found in several seabirds and also to the Antarctic region. The objective of this study was to investigate the presence of blood parasites in Antarctic penguins and skuas at Admiralty Bay. Blood smears and blood samples for molecular analyses to research Plasmodium/Haemoproteuswere collected in two reproductive periods, from December 2010 to March 2011 and from December 2011 to March 2012. A total of 185 bird samples were collected, including 120 penguins and 65 skuas. Skuas were negative for parasites. The tree species of penguins were positives to Plasmodium/Haemoproteusby molecular analysis, including two P. papua, two P. antarctica and tree P. adeliae. Only one positive penguin by molecular technique, a P. papua, was positive in blood smears, diagnosed with Plasmodium sp. There was no significant difference between male and female individuals of the parasitizedspecies, as well as between adults and chicks. Parasitized birds (n = 7) were categorized as underweight (n=5) and overweight (n=2).The present study is the first to report blood parasites in the Antarctic region and is also the first record of the presence of blood protozoa for the three penguin species analyzed. The absence of blood parasites in Antarctic birds has been justified by the absence of potential vectors in the region. Therefore, it is possible that the parasitized penguins acquired infectionwhen they disperse during southern winter. However, antarctic skuas are migratory birds, and they can reach regions with recognized potential vectors, but have never been diagnosed with blood parasites, what was reinforced by data of the present study. In this case, it is believed that skuas may have a competent immune system, or that the absence of these parasites in these birds is justified by phylogenetic constraints between the host-parasite. Nevertheless, little is known about the existence of vectors in the Antarctica, migratory routes of birds in the region and parasite-host specificity. The inedited results found in this study should therefore serve as a starting point to understand the host-parasite interactions, and to contribute to the preservation of the Antarctic environment.

Conselho Nacional de Desenvolvimento Científico e Tecnológico / O parasitismo é uma importante força seletiva em populações, assim como a competição e a predação. Os parasitos sanguíneos podem afetar a coloração da plumagem, a seleção sexual e o sucesso reprodutivo em aves. As aves da região Antártica têm sido mencionadas na literatura como livres de hemoparasitos. A Baía do Almirantado, na Ilha Rei George, Península Antártica, é a maior Baía da região, abrigando diferentes espécies de aves durante o período reprodutivo. Dentre elas, estão duas espécies de skuas, as mais frequentes da Antártica, skua-sub-antártica (Catharacta lonnbergi) e skua-polar-do-sul (C. maccormicki) e três espécies de pinguins, pinguim-antártico (Pygoscelis antarctica), pinguim-papua (P. papua) e pinguim-de-adélia (P. adeliae). Skuas e pinguins são aves que se dispersam durante o inverno austral, podendo ser potenciais reservatórios e transmissores de parasitos, embora resultados negativos de hemoparasitos tenham sido encontrados para diversas outras aves marinhas e também para a região Antártica. O objetivo do presente trabalho foi investigar a presença de hemoparasitos em pinguins e skuas antárticos na Baía do Almirantado. Amostras de lâminas de esfregaço sanguíneo e de sangue para análises moleculares de pesquisa de Plasmodium/Haemoproteus foram coletadas em dois períodos reprodutivos, de dezembro de 2010 a março de 2011 e de dezembro de 2011 a fevereiro de 2012. Um total de 185 amostras de aves foram coletadas, incluindo 120 pinguins e 65 skuas. Skuas foram tiveram resultados negativos para hemoparasitos. As três espécies de pinguins foram positivas para Plasmodium/Haemoproteus , via técnica molecular, incluindo dois P. papua,dois P. antarctica etrês P. adeliae. Apenas um indivíduo confirmado positivo pela técnica molecular, pertencente a P. papua, foi positivo utilizando a técnica de esfregaço sanguíneo, com diagnóstico de Plasmodium sp. Não houve diferença significativa entre indivíduos machos e fêmeas das espécies parasitadas, assim como entre adultos e filhotes. As aves parasitadas (n=7), foram categorizadas abaixo do peso (n=5) e acima do peso (n=2). O presente estudo é o primeiro a relatar hemoparasitos na região Antártica e também é o primeiro registro de presença de hemoprotozoários para as três espécies de pinguins analisadas. A ausência de hemoparasitos em aves antárticas tem sido justificada pela ausência de potenciais vetores na região. Portanto, é possível que os pinguins parasitados tenham adquirido a infecção durante a dispersão por ocasião do inverno austral. No entanto, skuas antárticas também são aves migratórias, que podem atingir regiões com potenciais vetores reconhecidos, mas nunca foram diagnosticadas com hemoparasitos, o que foi reforçado pelos resultados negativos do presente estudo. Nesse caso, acredita-se que skuas, podem ter um sistema imune competente ou que a ausência de hemoparasitos nessas aves seja justificada por confinamentos filogenéticos entre parasito-hospedeiro. Entretanto, pouco se sabe sobre a existência de vetores na Antártica, rotas migratórias das aves da região e especificidade parasito-hospedeiro. Os resultados inéditos encontrados no presente estudo devem, portanto, servir como ponto de partida para o entendimento das interações parasito-hospedeiro, de forma a contribuir para a preservação do ambiente antártico. / Parasitism is an important selective pressure in populations, as well as competition and predation. Blood parasites can affect the color of plumage, sexual selection and reproductive success in birds. Antarctic birds have been mentioned in literature absent of blood parasites. Admiralty Bay is located at King George Island, Antarctic Peninsula, and is the largest bay on the region, harboring different avian species during the reproductive period. Among them, are the two most common skuas of Antarctica, the brown-skua (Catharacta lonnbergi) and the south-polar-skua (Catharacta maccormicki), and tree penguins species, the Chinstrap (Pygoscelis antarctica), the Gentoo (P. papua) and the Adelie (P. adeliae). Skuas and penguins are seabirds that migrating during the southern winter, and may be potential reservoirs and transmitters of parasites. However, negative results of blood parasiteshave been found in several seabirds and also to the Antarctic region. The objective of this study was to investigate the presence of blood parasites in Antarctic penguins and skuas at Admiralty Bay. Blood smears and blood samples for molecular analyses to research Plasmodium/Haemoproteuswere collected in two reproductive periods, from December 2010 to March 2011 and from December 2011 to March 2012. A total of 185 bird samples were collected, including 120 penguins and 65 skuas. Skuas were negative for parasites. The tree species of penguins were positives to Plasmodium/Haemoproteusby molecular analysis, including two P. papua, two P. antarctica and tree P. adeliae. Only one positive penguin by molecular technique, a P. papua, was positive in blood smears, diagnosed with Plasmodium sp. There was no significant difference between male and female individuals of the parasitizedspecies, as well as between adults and chicks. Parasitized birds (n = 7) were categorized as underweight (n=5) and overweight (n=2).The present study is the first to report blood parasites in the Antarctic region and is also the first record of the presence of blood protozoa for the three penguin species analyzed. The absence of blood parasites in Antarctic birds has been justified by the absence of potential vectors in the region. Therefore, it is possible that the parasitized penguins acquired infectionwhen they disperse during southern winter. However, antarctic skuas are migratory birds, and they can reach regions with recognized potential vectors, but have never been diagnosed with blood parasites, what was reinforced by data of the present study. In this case, it is believed that skuas may have a competent immune system, or that the absence of these parasites in these birds is justified by phylogenetic constraints between the host-parasite. Nevertheless, little is known about the existence of vectors in the Antarctica, migratory routes of birds in the region and parasite-host specificity. The inedited results found in this study should therefore serve as a starting point to understand the host-parasite interactions, and to contribute to the preservation of the Antarctic environment.