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Studies of Poly(Propyl Ether Imine) Dendrimers as Synthetic SiRNA Delivery Vectors with Relevance to Hepatitis C Virus InhibitionLakshminarayanan, Abirami January 2015 (has links) (PDF)
Dendrimers are synthetic macromolecules with branches-upon-branches structures, nanoscale dimensions and a high density of surface groups. Presence of multiple cationic sites in dendrimers permits their efficient nucleic acid complexation and cellular internalization through endocytic pathways. PETIM dendrimers of are characterized by tertiary amine branch points, and ether linkages. A third generation PETIM dendrimer, G3(NH2)24, with nitrogen at the core and twenty four peripheral primary amines was synthesized through alternate Michael addition and reduction reactions. The ability of G3(NH2)24 to interact with DNA was ascertained by spectroscopic and bio-physical techniques. These studies established the formation of dendrimer-DNA, and complex formation was also shown to protect the plasmid DNA from nucleases. Toxicity studies in cell culture, as well as, in female Balb/c mice established the non-toxic properties of the dendrimer. G3(NH2)24 was able to mediate efficient transfection in mammalian cells and in vivo.
Targeted delivery of small interfering RNA (siRNA) to hepatocytes, in order to combat hepatitis C virus (HCV) infection was undertaken to expand the scope of PETIM dendrimer based gene delivery. Functionalization of the dendrimer periphery with galactose units ensured preferential delivery to the liver through multivalent interactions with the asialoglycoprotein receptors on the liver cell surface. The delivery of siRNA to the perinuclear region, in close proximity to the HCV RNA replication site resulted in ~75% decrease in viral RNA levels in replicon containing cells, as well as, JFH-1 infectious virus systems. The dendrimer-siRNA complexes were preferentially delivered to mice liver and were active in vivo.
Physico-chemical studies of the protonation pattern of PETIM dendrimer indicated that the protonation of the dendrimer amines proceeded in a shell-wise pattern from the periphery to the core. The primary amines of the dendrimer as well as the outer shell tertiary amines with pKa values ~7-10 were protonated at physiological pH and were cationic sites for nucleic acid condensation. The inner shell tertiary amines with a pKa of ~4-6 were protonated at endosomal pH and aided ‘endosomal escape’ due to the high buffering capacity of 3.5.
Work described in the Thesis establish a new synthetic dendrimer vector, namely, the series of PETIM dendrimers, as a high value gene delivery vector, making in-roads towards pre-clinical and possible clinical trials in future studies.
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Synthesis And Studies Of Poly(Propyl Ether Imine) (PETIM) DendrimersJayamurugan, Govindasamy 03 1900 (has links)
Dendrimers are hyperbranched macromolecules, with branches-upon-branches architectures, precise constitutions and molecular weights of several kiloDaltons (Figure 1). The dendritic structure remains to be an influential feature in the developments of dendrimer chemistry at large. Organometallic catalysis forms an active area, wherein the dendrimers find a defined importance. A number of dendrimer types have been utilized to study organometallic catalysis that combine the dendritic architectural principles. Chapter 1 of the Thesis summarizes the advances in the dendrimer-mediated catalyses, apart from an overview of the methods adopted to synthesize dendrimers.
Chapter 2 describes the synthesis of newer types of larger generation poly(propyl ether imine) (PETIM) dendrimers. The molecular structure of a sixth generation PETIM dendrimer is shown in Figure 2. The PETIM series of dendrimers are synthesized by iterative synthetic cycles of two reductions and two Michael addition reactions. Modifications of the synthetic methods were identified, so as to facilitate the synthesis and purification of the higher generation dendrimers. Formation of the PETIM dendrimers, possessing a tertiary amine as the branch juncture and ether as the linker component, is assessed systematically by routine analytical techniques. The peripheries of these dendrimers possess either alcohols or amines or carboxylic acids or esters or nitriles, thereby opening up possibilities for varied studies.
Architecturally-driven effects are searched constantly while integrating dendrimers in wide ranging studies. With knowledge that un-functionalized PAMAM and PPI dendrimers show fluorescence properties, we tested the PETIM dendrimers for their luminescence property. The photophysical properties of PETIM dendrimers presenting esters, alcohols, acid salts, nitriles and amines at their peripheries were studied. The anomalous fluorescence arising from alcohol terminated PETIM dendrimers (Figure 3) was established through a series of experiments. Various experimental parameters including pH, viscosity of the solvents, aging, temperature and concentration were used to assess the photochemical properties of the PETIM dendrimers. It was observed that generations 1 to 5 absorbed in the region of 260-340 nm, in MeOH and in aqueous solutions. Excitation of the OH-terminated dendrimer solutions at 330 nm led to an emission at ~390 nm (Figure 4). Dendrimers presenting esters, acid salts and amines at their peripheries also exhibited a similar excitation and emission wavelengths. An increase in the fluorescence intensity was observed at low pH and with more viscous solvents. Lifetime measurements showed at least two species (~2.5 and ~7.0 ns) were responsible for the emission. The quenching of the fluorescence originating from the PETIM dendrimers by inorganic anions was also established in the present study. The periodate, persulfate, perchlorate and nitrite anions quenched the fluorescence efficiently among several anions tested. An ‘oxygen-interacted moiety’, in addition to altered hydrogen bonding properties of the dendrimers, was presumed contribute to the anomalous fluorescence behavior. Chapter 3 of the Thesis elaborates photophysical studies of several PETIM dendrimers.
Incorporation of catalytically active moieties at the peripheries of dendrimers was identified as an important avenue, in order to explore the effect of the dendritic architectures on the catalytic activities of chosen catalytic moieties. In order to assess the effect of the dendritic scaffold, in relation to both numbers and locations of the catalytic units, an effort was undertaken to study the catalytic activities of catalytic units, that are present in varying numbers within one generation. Partial and full phosphine-metal complex substituted three generations of dendritic catalysts were synthesized, by using a selective alkylation as a key step. The number of the primary amine groups led to define the number of phosphine groups at the peripheries. The primary amine groups were, in turn, prepared by a Michael addition of acrylonitrile and hydroxyl groups, followed by a reduction of the nitrile moieties to the corresponding amines. The first and the second generation PETIM dendrimers utilized in this study present up to four and eight hydroxyl groups at their peripheries. A partial etherification was exercised in order to mask few hydroxyl groups, useful to prepare the partially substituted phosphine groups. Subsequent Michael addition of acrylonitrile with remaining hydroxyl groups, to afford the nitrile terminated dendrimers, and a metal-mediated reduction of the nitrile to amine led to the required number of amine functionalized dendrimers. Functionalization of the peripheries with alkyldiphenyl phosphine moieties was conducted through a Mannich reaction of the amines with formaldehyde and diphenyl phosphine. The subsequent metal complexation with Pd(COD)Cl2 afforded a series of phosphine-Pd(II) complexes, for the zero, first and second generation PETIM dendrimers. Figure 5 shows the molecular structures of a partially and a fully substituted second generation dendrimer.
Catalytic activities of the dendrimer-Pd(II) complexes were assessed in both Heck and Suzuki coupling reactions. A C-C bond forming reactions were studied, with the series of dendritic-Pd(II) catalysts, using Cs2CO3 as a base and at 40 oC. In an overall observation, it was found that an individual catalytic site showed a considerable increase in the catalytic activity when it was present in multiple numbers than as a single unit within the same generation (Figure 6).
Figure 6. Bar diagrams of (a) Heck reaction and (b) Suzuki reaction, employing the dendritic catalysts 1 - 11. The Heck coupling reaction involved tert-butyl acrylate and iodobenzene, and the Suzuki coupling reaction involved phenyl boronic acid and iodobenzene.
The observations revealed that: (i) the higher generation dendritic catalysts exhibited higher catalytic activities per catalytic site and (ii) the dendritic scaffold has a role in enhancing the activities of the individual catalytic sites. The catalysis study identified the catalytic activities that occurred when a series of catalysts within a given dendrimer generation was used. Such a study is hitherto unknown and the observations of this study address some of the pertinent queries relating to the efficiencies of multivalent dendritic catalysts. Chapter 4 of the Thesis describes the synthesis and characterization of series of organometallic PETIM dendrimer and studies of their catalytic activities.
Studies on solid-supported catalysis present a significant importance in heterogeneous organometallic catalysis. Silica is a prominently utilized heterogeneous metal catalyst support. Functionalization of the solid supports with suitable chelating ligands is emerging as a viable strategy to circumvent not only the pertinent metal catalyst deterioration and leaching limitations, but also to stabilize the metal particles and to adjust their catalytic efficiencies. In exploring heterogeneous organometallic catalysis, functionalization of silica with a first generation phosphinated dendritic amine was undertaken. The synthetic scheme adopted to synthesize dendrimer functionalized silica is shown in Scheme 1. The reaction of the chloropropylated silica 4 with amine 3 was conducted in CHCl3. Complexation of the functionalized silica 5 with Pd(COD)Cl2 led to isolation of Pd(II)- impregnated silica.
Scheme 1. Preparation of Pd nanoparticles stabilized by functionalized silica.
It was anticipated that the ratio of phosphine to Pd(II) would be 1:0.5, resulting from a bidendate binding of the phosphine ligand to Pd metal. The observed ICP-OES result indicated that all phosphine ligands did not chelate the metal. With the desire to obtain the metal nanoparticles, the metal complex was subjected to a reduction, which was performed by conditioning 5-Pd(II) complex in EtOH. The Pd metal nanoparticle thus formed was characterized by physical methods, and the spherical nanoparticles were found to have >85 % size distribution between 2-4 nm (Figure 7). Analyses of the Pd(0) impregnated in dendrimer functionalized silica were performed using NMR, XPS spectroscopies, elemental analysis and microscopies.
Figure 7. Transmission electron micrograph and histogram of 6, obtained after treatment with EtOH.
The Pd-nanoparticle stabilized silica was used in the hydrogenation of several α, β-unsaturated olefins. The catalyst recycling experiments were conducted more than 10 times, and no loss in the catalytic activities were observed. Chapter 5 describes the functionalization of the silica support with diphenylphosphinomethyl-derivatized dendritic amine, palladium nanoparticle formation and the catalysis studies.
Overall, the Thesis establishes the synthesis of larger generation PETIM dendrimers, studies of their anomalous fluorescence behavior, organometallic catalysis in solution, as well as, in heterogeneous conditions, pertaining to the C-C bond forming reactions and hydrogenation reactions.
(For figure, graph and structural formula pl see the pdf file)
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