Image-guided surgeries employ advanced imaging and computing technologies to assist the surgeon when direct visualization is inadequate or unavailable. As modern surgeries continue to move toward minimally invasive procedures, tracked ultrasound (US), an emerging technology that uniquely combines US imaging and position tracking, has been increasingly used for intraoperative guidance in surgical interventions. The intrinsic accuracy of a tracked US system is primarily determined by a unique procedure called ``probe calibration", where a spatial registration between the coordinate systems of the transducer (provided by a tracking device affixed to the probe) and the US image plane must be established prior to imaging. Inaccurate system calibration causes misalignments between the US image and the surgical end-effectors, which may directly contribute to treatment failure. The probe calibration quality is further reduced by the "elevation beamwidth" or "slice thickness", a unique feature of the ultrasound beam pattern that gives rise to localization errors and imaging uncertainties. In this thesis, we aim to provide an automated, pure-computation-based, intraoperative calibration solution that also incorporates the slice thickness to improve the calibration accuracy, precision and reliability. The following contributions have been made during the course of this research. First, we have designed and developed an automated, freehand US calibration system with instant feedback on its calibration accuracy. The system was able to consistently achieve submillimeter accuracy with real-time performance. Furthermore, we have developed a novel beamwidth-weighted calibration framework (USB-FW) that incorporates US slice thickness to improve the estimation of calibration parameters. The new framework provides an effective means of quality control for calibration results. Extensive phantom validation demonstrated that USB-FW introduces statistically significant reduction (p = 0.001) in the calibration errors and produces calibration outcomes that are less variable than a conventional, non-beamwidth-weighted calibration. Finally, we were the first to introduce an automated, intraoperative Transrectal Ultrasound (TRUS) calibration technology for needle guidance in prostate brachytherapy. Our tests with multiple commercial TRUS scanners and brachytherapy stepper systems demonstrated that the proposed method is practical in use and can achieve high calibration accuracy, precision and robustness. / Thesis (Ph.D, Computing) -- Queen's University, 2012-10-22 16:18:55.439

Improved soil water conservation has become an important subject in semi-arid areas due to low and erratic rainfall which is often combined with higher temperatures to provide unsuitable conditions for successful crop productivity. Dryland agriculture remains vulnerable to yield losses in these areas. This calls for implementation of conservation agricultural practices that would improve dryland maize productivity. An on-station field trial was started in 2007 at Zeekoegat experimental farm (24 kilometers north of Pretoria), to establish the effect of different conservation agriculture practices on soil and plant properties. The experimental lay-out was a split-plot randomized complete block design, replicated three times, with each replicate split into two tillage systems (whole plots) and then each whole plot (reduced tillage (RT) and conventional tillage (CT)) was subdivided into 12 treatments (two fertilizer levels x 6 cropping patterns). The present study explored the impacts of different tillage practices, cropping patterns and fertilization levels on soil water content, soil temperature and dryland maize productivity during the 2010/11 and 2011/12 growing seasons. To improve the quality of soil water content (SWC) data, the effect of correction for concretions on soil bulk density and the relationship between volumetric soil water content (SWC) vs neutron water meter (NWM) count ratios was also investigated. Corrections for concretions on soil bulk density did not improve NWM calibrations in this study. In all seasons, significantly higher mean SWC was found under RT treatment than in CT at all depths except at 0-300 mm. For example, during the 2010/11 growing season, SWC under RT was 1.32 % and 1.10 % higher than CT for the 300 – 1350 mm and 0 – 1350 mm soil profiles, respectively. The mean weekly SWC was consistently higher for RT throughout both the growing seasons. Significantly higher SWC was also found under monoculture at all soil depths (except at 0-300 mm during 2011/12) compared to treatments under intercropping. For example, during 2010/11, at 0-300mm, SWC under maize monoculture was 1.72 % higher than under intercropping. The maximum and minimum soil temperatures were significantly higher at 100 and 400 mm soil depths under CT than under RT during 2010/11. During 2011/12, significantly higher minimum soil temperatures at 100 mm depth and lower temperature differences (maximum – minimum soil temperatures) at 400 mm depth were observed under intercropping. Despite the higher SWC and reduced soil temperature under RT, the maize seeds emergence rate was lower and plant stand was reduced. This is attributed to other factors associated with RT systems such as increased soil penetration resistance which often leads to poor root development. The lower soil temperatures under RT were generally within the range that would not be expected to inhibit growth and uptake of nutrients. Slower growth under RT resulted in lower biomass and grain yield. Plants that received high fertilizer rates grew more vigorously than plants under lower fertilizer levels when water was not a limiting factor, but produced lower grain yield due to water shortage in March, especially in 2011/12. The harvest index was therefore lower for treatments that received high fertilizer levels. Maize biomass under monoculture x low fertilizer level was significantly lower compared to other fertilizer x cropping pattern treatments. Maize plant growth under intercropping was improved throughout the seasons, which led to significantly higher grain yield than under maize monoculture. It is therefore recommended that farmers in dryland areas take the advantage of intercropping maize with legumes to obtain higher maize productivity. Further research should focus on investigating the possibility of roots restrictions occurring under RT conditions and under various environmental and soil conditions. / Dissertation (MScAgric)--University of Pretoria, 2014. / lk2014 / Plant Production and Soil Science / MScAgric / Unrestricted

The objective of this thesis is two-fold: to analyze the directional calibration of a 3-hole probe in steady flow and to develop a method for the interpretation of measurements recorded with a novel, fast-response Pitot-type probe in unsteady, turbulent flow. Calibration data for the 3-hole probe’s two side ports was taken in the steady, non-turbulent region of a free jet and was evaluated for symmetry. In addition, data that was recorded using one side port in two independent calibration runs was compared to study repeatability. Misalignment was found between the nominally symmetric data sets, which may be the result of geometric probe tip defects or a misalignment of the side ports within -2 to -10 degrees. This misalignment suggested that the two probe ports must both be calibrated. The two data sets compared for repeatability were almost indistinguishable, suggesting that probe alignment was very repeatable over multiple calibration runs. This result implied that only one calibration run may be necessary for a single probe as well as for multiple probes having nearly identical tip geometry. These methods and findings from the 3-hole probe calibration provide useful processes and considerations for the calibration of directionally sensing pressure probes. Regarding the fast-response Pitot-type probe, measurements were conducted using the same free jet as was used with the 3-hole probe. The fast-response probe, which contains a Kulite sensor fitted in the sensing orifice of a Pitot tube, was positioned at incremental centerline locations in the unsteady, turbulent region of the jet flow, and mean and dynamic pressure data were recorded. Measurements were also taken at incremental centerline locations with a standard Pitot tube and a constant temperature hot wire anemometer. The Kulite mean pressure data and standard Pitot tube data were compared directly and agreed well. The hot wire data and a relevant turbulence model was used to generate mean pressure predictions, which correlated reasonably with a slight offset from the Kulite sensor and Pitot probe mean data. Next, the dynamic pressure data from the Kulite sensor was compared with predictions generated by the hotwire data, literature static pressure fluctuation data, and a second relevant turbulence model. In the centerline region where turbulence quantities begin to stabilize, the Kulite sensor data and predictions agreed reasonably well, within 7%. Thus, while not delivering ideal results, the turbulence models used provide a plausible method for the interpretation of the fast-response Pitot-type probe pressure measurements.

<p dir="ltr">In this thesis, an experimental procedure for assessing unsteady fluctuations in flow velocity inside an annular low pressure turbine test facility using constant temperature anemometry is established. This procedure is then applied to two test cases in order to validate the methodology and build expertise with the measurement techniques involved. The results of these experiments appear to be reasonable and in good agreement with the body of literature documenting such cases. After the procedure is validated, the experiments in the annular test section are conducted and the results are processed according to the same methodology as previous. The results provide spatial and temporal understanding of the flow at a plane downstream of the blade row. The uncertainties of measured quantities are computed and the experimental results are contextualized with a comparison to a numerical study. The body of work is assessed to determine whether the research objective has been met and recommendations for future studies are given.</p>