Life on early earth has long been the topic of discussion for many researchers: how did it come to be? Which cells came first? Where can we find them? The most ancient rocks on our planet may hold some of the answers to these questions, but many may only be answered in laboratories. Chemical and morphological traces can be found from Archaean deposits, tantalisingly similar to modern day prokaryotes. Often, they are interpreted as the fossilised remains of bacteria or archaea. However, the caveat remains the abiotic mechanisms with which many similar traces and markers can be formed. The purpose of this thesis was to look into the similarities and differences in abiotic and biological formation of filamentous structures in rocks and observe whether there are chemical or morphological factors that allow for distinguishing between the two. Various laboratory methods were used: chemical gardens to form filamentous abiotic structures and experimental mineralisation of a filamentous methanogen in carbonate, phosphate, and silicate in order to compare and contrast the various mineralisation mechanisms in the fidelity of preservation of the microbes. In the former experiment, analysis with electron paramagnetic resonance (EPR) spectroscopy was carried out to identify potential chemical biomarkers. A combination of scanning and transmission electron microscopy, energy dispersive X-ray (EDX) analysis, X-ray diffraction (XRD) and Raman spectroscopy were also used to analyse the minerals and precipitates formed in both sets of experiments. The results of this research indicate that morphology of filamentous structures and the chemical signatures in biominerals may not be reliable as biogenic indicators. Furthermore, the work on experimental mineralisation reveals the possible biases in the rock record of microbial preservation which is highly dependent on the structure of the cell wall, chemistry of the environment, and the mineral formed. Finally, this work has important outcomes for the search for biomarkers on earth and on other planets and for the recognition of pseudofossils versus microbial fossils in the rock record.