I investigated how anthropogenic acidification influences stream metabolism and nitrogen (N) cycling by considering the stress response of microbial compartments responsible for these ecosystem processes. Microcosm incubations of leaf biofilms from streams of differing pH revealed greater rates of fungal biomass-specific respiration (i.e. the stress metric <i>q</i>CO₂) and biomass-specific N uptake (i.e. <i>q</i>N) with increasing acidity. The positive relationship between <i>q</i>CO₂ and <i>q</i>N indicated alternate fates for N other than structural biomass, possibly related to increased exoenzyme production as part of the stress response. Whole-stream ¹⁵N experiments and measurements of respiration and fungal standing crop across the pH gradient resulted in similar patterns in <i>q</i>CO₂ and <i>q</i>N found in microcosm experiments, supporting <i>q</i>CO₂ as an ecosystem-level stress indicator and providing insight towards controls over N cycling across the pH gradient. Fungal biomass and ecosystem respiration declined with increasing acidity while N uptake metrics were not related to pH, which suggested <i>q</i>N in acid streams was sufficiently high to counteract declines in fungal abundance. During spring, chlorophyll <i>a</i> standing crops were higher in more acidic streams despite lower nutrient concentrations. However, N uptake rates and gross primary production differed little between acid and circumneutral streams. Reduced heterotrophy in acid streams was apparent in lower whole-stream respiration rates, less ability to process organic carbon, and little response of N uptake to added carbon resources. Overall, acid-induced stress in streams was found to impair decomposer activity and caused a decoupling of carbon and nitrogen cycles in these systems. / Ph. D.