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Oxidation and reactivity of 3,4-dihydroxyphenylacetaldehyde, a reactive intermediate of dopamine metabolismAnderson, David Gustav Rathe 01 May 2011 (has links)
Parkinson's disease (PD) is a progressive neurodegenerative and movement disorder that involves specific loss of dopaminergic neurons in the substantia nigra of the brain. Exact causes of PD are unknown. However, cells affected in PD are centers of dopamine (DA) synthesis, storage, and metabolism, which implicate DA as an endogenous neurotoxin that contributes to PD. Furthermore, DA is known to undergo oxidation to radicals and quinones. These reactive species exert deleterious effects on cells through a variety of mechanisms that are relevant to the pathogenesis of PD. Another potential mechanism of toxicity for DA is metabolism to 3,4-dihydroxyphenylacetaldehyde (DOPAL). This reactive metabolite is significantly more toxic than the parent DA. DOPAL has several demonstrated mechanisms of toxicity, including formation of protein-adducts via reaction with amine-type cellular nucleophiles. However, known toxicity mechanisms do not fully account for DOPAL's high toxicity. Oxidation of DOPAL to a reactive quinone or radical could help explain its high toxicity. Therefore, the hypothesis of this work is that DOPAL is capable of undergoing oxidation that leads to increased protein modification and nucleophilic reactivity. Experimentally, oxidation of DOPAL results in formation of a semi-quinone radical and an ortho-quinone, as confirmed by electron paramagnetic resonance spectroscopy and nuclear magnetic resonance spectroscopy, respectively. In agreement with the stated hypothesis, oxidation of DOPAL enhanced its ability to induce protein cross-linking of a model protein (glyceraldehyde 3-phosphate dehydrogenase) as indicated by polyacrylamide gel-electrophoresis. Also, the presence of anti-oxidants (ascorbate, N-acetyl cysteine) attenuated the reactivity of DOPAL with the model aminenucleophile N-acetyl lysine. These results indicate that DOPAL oxidation enhances both protein cross-linking and nucleophilic reactivity.
This work resulted in several other important findings. DOPAL is shown to undergo carbonyl-hydration in aqueous media, and spontaneous oxidation of DOPAL results in formation of superoxide. Furthermore, DOPAL is shown to be susceptible to oxidation by cyclooxygenase-2, an enzyme known to be involved in PD. This provides a potential mechanism for formation of the oxidized products identified here. As DA metabolism and oxidation occur in cells affected by PD, the experimental results demonstrated here are likely relevant for understanding the pathogenesis of PD.
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REAL-TIME OBSERVATION OF MOLECULAR REACTION MECHANISM OF HALOPYRIMIDINES AS RADIO-/PHOTOSENSITIZING DRUGS USING TIME-RESOLVED FEMTOSECOND LASER SPECTROSCOPYWang, Chunrong January 2007 (has links)
Replacement of thymidine in DNA by halopyrimidines, such as bromodeoxyuridine (BrdU) and iododeoxyuridine (IdU), has long been known to enhance DNA damage and cell death induced by ionizing/UV radiation, but the mechanism of action of halopyrimidines at the molecular level is poorly understood. We have applied advanced time-resolved femtosecond laser spectroscopy to this molecular system of biological, chemical and medical significance. We obtained the first real-time observations of the transition states of the ultrafast electron transfer (UET) reactions of halopyrimidines with the ultrashort-lived precursor to the hydrated electron, which is a general product in ionizing/UV radiation. Our results provide a mechanistic understanding of these photo-/radiosensitizing drugs at the molecular level.
We found that the UET reaction of BrdU is completed within 0.2 picosecond (ps) after the electronic exciataion, leading to the formation of the transition state BrdU* with a lifetime of ~1.5 ps that then dissociates into Br and a high reactive radical dU•. We have also demonstrated that the reaction efficiency for the formation of the reactive radical dU• to cause DNA damage and cell death is in the order of IdU>>BrdU>CldU>>FdU. This is due to the availability of two precursor states of ~0.2 ps and ~ 0.54 ps lifetimes for dissociative electron attachment (DEA) to IdU, of one precursor state of ~0.2 ps lifetime for DEAs to BrdU and CldU, and no precursors for DEA to FdU. This explains why BrdU and IdU were found to be effective radio-/photosensitizers and indicates that IdU should be explored as the most effective radiosensitizer among halopyrimidines. Moreover, as a by-product of this project, these halopyrimidines have been employed as quantum-state-specific molecular probes to resolve a long-standing controversy about the nature and lifetimes of prehydrated electrons. These findings also have a broader significance as they indicated that nonequilibrium precursor electrons may play an important role in electron-initiated reactions in many biological, chemical and environmental systems.
We have also demonstrated UET reactions of nucleotides with the precursor to the hydrated electrons. Our results indicate that among DNA bases, adenine is the most efficient electron trapper and an effective electron transfer promoter, while guanine is the most effective in dissociative electron attachment. These results not only primarily explain the sequence selectivity of duplex DNA containing BrdU/IdU, but imply that the DEA of guanine is an important mechanism for radiation-induced DNA damage in ionizing radiation and radiotherapy of cancer.
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REAL-TIME OBSERVATION OF MOLECULAR REACTION MECHANISM OF HALOPYRIMIDINES AS RADIO-/PHOTOSENSITIZING DRUGS USING TIME-RESOLVED FEMTOSECOND LASER SPECTROSCOPYWang, Chunrong January 2007 (has links)
Replacement of thymidine in DNA by halopyrimidines, such as bromodeoxyuridine (BrdU) and iododeoxyuridine (IdU), has long been known to enhance DNA damage and cell death induced by ionizing/UV radiation, but the mechanism of action of halopyrimidines at the molecular level is poorly understood. We have applied advanced time-resolved femtosecond laser spectroscopy to this molecular system of biological, chemical and medical significance. We obtained the first real-time observations of the transition states of the ultrafast electron transfer (UET) reactions of halopyrimidines with the ultrashort-lived precursor to the hydrated electron, which is a general product in ionizing/UV radiation. Our results provide a mechanistic understanding of these photo-/radiosensitizing drugs at the molecular level.
We found that the UET reaction of BrdU is completed within 0.2 picosecond (ps) after the electronic exciataion, leading to the formation of the transition state BrdU* with a lifetime of ~1.5 ps that then dissociates into Br and a high reactive radical dU•. We have also demonstrated that the reaction efficiency for the formation of the reactive radical dU• to cause DNA damage and cell death is in the order of IdU>>BrdU>CldU>>FdU. This is due to the availability of two precursor states of ~0.2 ps and ~ 0.54 ps lifetimes for dissociative electron attachment (DEA) to IdU, of one precursor state of ~0.2 ps lifetime for DEAs to BrdU and CldU, and no precursors for DEA to FdU. This explains why BrdU and IdU were found to be effective radio-/photosensitizers and indicates that IdU should be explored as the most effective radiosensitizer among halopyrimidines. Moreover, as a by-product of this project, these halopyrimidines have been employed as quantum-state-specific molecular probes to resolve a long-standing controversy about the nature and lifetimes of prehydrated electrons. These findings also have a broader significance as they indicated that nonequilibrium precursor electrons may play an important role in electron-initiated reactions in many biological, chemical and environmental systems.
We have also demonstrated UET reactions of nucleotides with the precursor to the hydrated electrons. Our results indicate that among DNA bases, adenine is the most efficient electron trapper and an effective electron transfer promoter, while guanine is the most effective in dissociative electron attachment. These results not only primarily explain the sequence selectivity of duplex DNA containing BrdU/IdU, but imply that the DEA of guanine is an important mechanism for radiation-induced DNA damage in ionizing radiation and radiotherapy of cancer.
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LASER SPECTROSCOPY OF RADICALS CONTAINING GROUP IIIA AND VA ELEMENTSGrimminger, Robert A 01 January 2014 (has links)
Radicals are interesting to study because of importance in so many processes such as semiconductor growth or stellar evolution. Laser induced fluorescence (LIF) and wavelength resolved emission spectra of jet cooled HPS, HAsO, AsD2, H2PS, and F2BO have been measured using the pulsed discharge jet technique.
Several bands in the à 1A′′ − X̃ 1A′ transition of HPS were observed and assigned with the help of ab initio calculations. The ab initio geometries showed that HPS does not follow Walsh’s predictions for the angle change upon electronic excitation; Walsh predicts an increase in HPS upon excitation while a decrease is calculated. Ab initio Walsh-style orbital angular correlation diagrams for both electronic states show a change in correlation for some orbitals upon electronic excitation, an effect that Walsh did not predict.
The à 1A′′ − X̃ 1A′ transitions were measured in HAsO and DAsO for the first time. A molecular geometry was derived for each electronic state from experimental rotational constants. The experimental geometries prove that HAsO also violates Walsh’s rules for the same reason shown in HPS.
The à 2A1 – X̃ 2B1 electronic transition of AsD2 and AsHD were measured. Vibrational levels observed in emission were fit to a local mode vibrational Hamiltonian. Using the previously reported rotational constants for AsH2 and those determined for AsD2 in this work, an improved estimate of the excited state geometry was obtained.
The discovery of the B̃ 2A′ − X̃ 2A′ band system of H2PS is the first report of this molecule. Both D2PS and HDPS were also observed. Ab initio calculations helped assign the transition. H2PS is one of the few tetra-atomic or larger molecules that violates Kasha’s empirical rule due to the large separation between the B̃ and à states.
Finally, laser induced fluorescence spectra of the F2BO radical was observed for the first time. Previous work showed two band systems with only a tentative assignment. The measured LIF spectra confirm the identity of the two band systems as the B̃ 2A1 – X̃ 2B2 and the B̃ 2A1 – Ã 2B1 transitions showing F2BO also violates Kasha’s rule.
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Photochemistry of Photodynamic Organic Azides and Peroxide in Crystals and ComplexesMerugu, Rajkumar 02 June 2023 (has links)
No description available.
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Independent Generation and Investigation of the C3'-deoxy-3'-thymidinyl Radical: A Proposed Intermediate in DNA-LEE InteractionsAbdallah, Buthina A. 28 December 2011 (has links)
No description available.
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Theoretical Studies of Reactive Intermediates in Complex Reaction MechanismsColdren, William Henry January 2018 (has links)
No description available.
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De la description d'intermédiaires réactionnels au développement de nouveaux catalyseurs pour l'oligomérisation de l'éthylène au nickel / From the description of intermediates to the development of innovative nickel catalysts for ethylene oligomerisationMoser, Emile 18 October 2018 (has links)
Les α-oléfines linéaires sont des intermédiaires particulièrement importants dans l'industrie chimique et pétrochimique. Elles ont des applications variées mais sont utilisées principalement en tant que co-monomère dans la production de diverses qualités de polyéthylène. Dans ce cadre, ce sont les α-oléfines courtes (butène-1, hexène-1 et octène-1) qui sont les plus intéressantes. Aujourd’hui les α-oléfines sont produites très majoritairement par oligomérisation de l’éthylène en catalyse homogène selon deux types de procédés : Les procédés dits « on-purpose » et ceux dits « full-range ». Les procédés « on-purpose » sont sélectifs vis-à-vis d’une α-oléfine et fonctionnent avec des systèmes au chrome ou au titane. Le mécanisme décrit dans ce cas-là est de type métallacyclique. Les procédés « full-range » quant à eux permettent d’obtenir une large distribution d’α-oléfine et les procédés de ce type font intervenir des catalyseurs de nickel, de fer ou de zirconium. Le mécanisme ici est de type polymérisation dégénérée.L’objectif de cette thèse est de développer un système au Ni qui serait actif en oligomérisation de l’éthylène via un mécanisme de type métallacyclique et qui permettrait donc d’atteindre des sélectivités importantes. Dans le mécanisme métallacyclique l’étape clé est le couplage oxydant de deux molécules d’éthylène dans laquelle le degré d’oxydation du métal passe de n à n+2. Dans cette thèse les couples Ni 0/Ni II et Ni I/Ni III ont été considérés. Des précurseurs de Ni0 et NiI possédants des ligands aux propriétés variées ont été synthétisés et testés en réacteur sous forte pression d’éthylène selon différentes méthodes d’activations. Des études mécanistiques ont été réalisées grâce à différentes techniques analytiques à savoir les spectroscopies RMN et RPE, et un développement important a été réalisé en spectrométrie de masse afin de pouvoir observer des intermédiaires réactionnels. La majorité des résultats expérimentaux ont pu être rationnalisés à travers des études théoriques (DFT) permettant de faire émerger des systèmes catalytiques originaux associés à des voies d’accès et des chemins réactionnels différentiant. / Linear α-olefins are very important intermediates in the chemical and petrochemical industries. They have various applications but they are mainly used as co-monomers in the production of various grades of polyethylene. In this topic, the short LAOs (1-butene, 1-hexene and 1-octene) are the most interesting. Today LAOs are almost exclusively produced by ethylene oligomérisation with homogenous catalysts and there are two different industrial processes : “On purpose” and “Full-range” processes. “On purpose” processes are selective toward an α-olefin and catalyst used are based on Ti or Cr complexes. The mechanism described with these types of catalysts is a metallacyclic mechanism. On the other hand ethylene oligomérisation with “full-range” processes is done mainly with Ni or Zr catalysts. In these case a large distribution of olefins is obtained and the mechanism described is a degenerative polymerisation mechanism. The aim of this thesis is to develop a Ni-based system which is active in ethylene oligomérisation through a metallacylcic mechanism in order to access good selectivity toward LAOs. In the metallacyclic mechanism the key step is the oxidative coupling of the two ethylene molecules in which the oxidation state of the metal goes from n to n+2. The couples Ni0/NiII and NiI/NiIII has been investigated in this thesis. Ni 0 and Ni I precursors with various ligands have been synthesized and tested in a semi-batch reactor under high pressure of ethylene with various activation methods. Mechanistic studies have been made using various analytical methods such has NMR and EPR spectroscopies and a big effort has been made in the development of a mass spectrometry method to observe reactive intermediates. In addition, almost all the experimental observations have been rationalized thanks to molecular modeling by DFT.
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Laser Flash Photolysis and Computational Studies of Ortho-Substituted Arylnitrenes, Arylchlorocarbenes, and Triplet Riboflavin TetraacetateTsao, Meng-Lin 11 March 2003 (has links)
No description available.
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Bioinspired oxidation reactions involving mono- and poly-nuclear transition metal complexesPérez, Inés Monte 07 April 2017 (has links)
Hochvalente Metal-oxo-, -peroxo- und -nitrenzentren später Übergangsmetalle werden als reaktive Intermediate vieler technologisch interessanter und biologischer Transformationsreaktionen wie die Oxidation von Kohlenwasserstoffen, Hydroxylierung, Aminierung, Aziridierung und Sauerstoffreduktion angenommen. Die Isolierung und Charakterisierung solcher Intermediate, wenngleich sie sich schwierig gestaltet, kann wichtige Informationen zum Mechanismus solcher Reaktionen liefern und kann somit zu einer gezielten Optimierung und Herstellung von verbesserten Katalysatoren genutzt werden. In dieser Arbeit wurden drei unterschiedliche Intermediate – Eisenoxo , Kobaltperoxo- und Kupfernitrenkomplexe – näher untersucht. Es konnte in dieser Arbeit gezeigt werden, dass die Reaktivität der hier untersuchten hoch-valenten reaktiven Intermediate maßgeblich abhängig vom Ligandsystem, dem Zentralmetall und dem verwendeten Oxidationsmittel sind. / High-valent metal-oxo, -peroxo and -nitrene cores of late transition metals have been proposed as reactive intermediates in transformations that are both technologically attractive and fundamental for the functioning of biological systems, like the activation of C−H bonds in hydrocarbons and the reduction of dioxygen. The isolation and characterization of such species, despite being challenging, provides valuable information about the mechanisms of the reactions performed and can help in the design of improved catalysts. In this work, three different kinds of intermediates were studied, namely iron-oxo, cobalt-peroxo and copper-nitrenes. Several new reactive species were isolated and spectroscopically characterized, and their reactivity was thoroughly investigated. It was shown that the reactivity patterns of the high-valent reactive intermediates here studied depend greatly on subtle changes in the ligand system, the metal center and the oxidant employed.
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