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Mutation lessons from RNA models /Cowperthwaite, Matthew Cranston, January 1900 (has links)
Thesis (Ph. D.)--University of Texas at Austin, 2008. / Vita. Includes bibliographical references.
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The antiviral potential of mammalian RNA silencing /Gitlin, Leonid, January 2004 (has links)
Thesis (Ph.D.)--University of California, San Francisco, 2004. / Includes bibliographical references. Also available online.
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The role of tombusvirus replicase proteins and RNA in replicase assembly, replication ans recombinationPanaviene, Zivile Sliesaraviciute. January 2004 (has links) (PDF)
Thesis (Ph. D.)--University of Kentucky, 2004. / Title from document title page (viewed Oct. 11, 2004). Document formatted into pages; contains ix, 131 p. : ill. Includes abstract and vita. Includes bibliographical references (p. 109-129).
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Dissecting the functions of carmovirus replicase proteins dissecting the functions of carmovirus tombusvirus replicase proteins dissectingRajendran, KS. January 2004 (has links) (PDF)
Thesis (Ph. D.)--University of Kentucky,2004. / Title from document title page (viewed Oct. 12, 2004). Document formatted into pages; contains ix, 111 p. : ill. Includes abstract and vita. Includes bibliographical references (p. 97-110).
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The role of HnRNP proteins, PSF and nonO/p54[superscript nrb], in pre-mRNA binding and splicing /Huang, Ching-jung, January 2000 (has links)
Thesis (Ph. D.)--University of Texas at Austin, 2000. / Vita. Includes bibliographical references (leaves 102-109). Available also in a digital version from Dissertation Abstracts.
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"Characterization of a small ribozyme with self-splicing activity"Harris, Lorena B. January 2008 (has links)
Thesis (Ph.D.)--Bowling Green State University, 2008. / Document formatted into pages; contains x, 126 p. : ill. Includes bibliographical references.
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RNA/protein interactions during group II intron splicing and toward group II intron targeting in mammalian cellsCui, Xiaoxia, Lambowitz, Alan, January 2005 (has links) (PDF)
Thesis (Ph. D.)--University of Texas at Austin, 2005. / Supervisor: Alan M. Lambowitz. Vita. Includes bibliographical references.
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Grammatical study of ribonucleic acids pseudo-knot structures a simulated annealing approach /Song, Yinglei. January 2003 (has links)
Thesis (M.S.)--Ohio University, August, 2003. / Title from PDF t.p. Includes bibliographical references (leaves 114-117)
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The annotation and evolutionary analysis of overlapping CDS in ssRNA viral genomesMcCauley, Sephen Jude January 2007 (has links)
No description available.
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High-Throughput Sequencing for Investigation of RNA Targets of Pt(II) Chemotherapy DrugsReister, Emily 06 September 2018 (has links)
Pt(II) chemotherapies, including cisplatin and oxaliplatin, have been used in cancer treatment since the 1970s, however, a full understanding of the mechanism by which these drugs function is still lacking. While the interaction between Pt(II) drugs and DNA has been extensively studied and subsequently indicted in the cellular response to Pt(II) drugs, recent data indicates non-DNA targets play important roles as well. To gain insight into the non-DNA damage-based effects induced by these drugs, MDA-MB-468 cells were treated at therapeutic concentrations of cisplatin between 30 minutes and 24 hours. Not only does this data provide insight into the complex time-dependent nature of the cellular response to cisplatin, but novel responses were also observed.
First, I describe how the expression of numerous snoRNAs decreases as early as 30 minutes post-treatment with either cisplatin or oxaliplatin, and differential expression analysis indicates this occurs before activation of the DNA damage response. Since snoRNAs are necessary components in ribosome processing, we sought to determine the role snoRNAs play in the cellular response to Pt(II) drugs. A subgroup of our identified snoRNAs direct modification of helix 69 on the 28S ribosome. Quantification of methylation of helix 69 and other locations suggests cisplatin induced changes in snoRNA expression leads to dysregulation of rRNA modification, likely altering ribosome activity. I also observe varied activation of different types of DNA damage and cell cycle arrest between 3 and 12 hours of cisplatin treatment while early expression changes show downregulation of mitochondrial genes. We also identify a number of lncRNAs previously associated with TNBC that are downregulated after cisplatin treatment. This study establishes a gene expression profile induced by cisplatin treatment of triple-negative breast cancer that demonstrates the complex interplay of multiple means of stress induction. Lastly, we establish a method for analyzing direct DNA binding targets of platinum(II) chemotherapeutics. This pilot study confirms high accumulation of platinum(II) compounds on guanine-rich DNA and suggests DNA binding of significant genes leads to changes in their RNA expression. / 10000-01-01
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