Thesis (Ph. D.)--Oregon State University, 2006. / Printout. Includes bibliographical references (leaves 109-115). Also available on the World Wide Web.

京都大学 / 0048 / 新制・課程博士 / 博士(農学) / 甲第17831号 / 農博第2016号 / 新制||農||1016(附属図書館) / 学位論文||H25||N4788(農学部図書室) / 30646 / 京都大学大学院農学研究科応用生物科学専攻 / (主査)教授 中坊 徹次, 准教授 田川 正朋, 准教授 豊原 治彦 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DGAM

Black rockfish (Sebastes melanops) is an important marine recreational species throughout the Pacific Northwest. Recent catch data indicate a trend of age-truncation in the black rockfish population off the Oregon coast, with older females rapidly disappearing from the population. In populations with broad age distributions, older fish may contribute disproportionately to larval production through a variety of mechanisms. Thus, the removal of older age classes through fishing may impact the population far beyond the simple loss of biomass. We tested the hypothesis that older females produce higher quality offspring, or offspring otherwise more capable of survival, than those from younger females. Mature female black rockfish of various ages were captured live and held until parturition. Larvae were then reared under identical conditions to compare performance in terms of growth, starvation, and mortality. Results indicate that older females produce offspring that grow faster in both length and weight, survive longer in the absence of an exogenous food supply, and exhibit lower mortality rates than offspring from younger mothers. This difference in larval performance may be explained by the relatively greater amount of endogenous energy reserves present in the oil globules of offspring from older mothers. Larval oil globule volume at parturition was significantly related to all larval performance factors and was strongly correlated with maternal age. Given the difference in larval quality, it is critical for the management of black rockfish, and possibly other species as well, that these older individuals not be addressed solely in terms of biomass, but their relative reproductive contribution and the repercussions of their removal from the population be considered. / Graduation date: 2004

Thesis (Ph. D.)--Oregon State University, 2011. / Printout. Includes bibliographical references (leaves 92-102). Also available on the World Wide Web.

Thesis (Ph.D.)--Memorial University of Newfoundland, 2002. / Includes bibliographical references.

Pacific ocean perch (Sebastes alutus) is a slow growing species of demersal rockfish, which inhabits the continental slope of the west coast of North America. This species represents a highly commercial fishery and an important part of the groundfish fishery of British Columbia. A variety of biological factors are known to influence the concentrations of trace metals in fish, including, age, body size and diet; all of which vary in this species. Little is known of the concentrations of total mercury and total arsenic in Sebastes alutus from British Columbia, a Canadian province where marine groundfish have previously been found with elevated concentrations of mercury. The spatial variability of trace elements across different fishing regions within British Columbia is also unknown. Substantial variability in concentrations of both mercury and arsenic has been reported in marine fish from around the globe. In the case of arsenic, associations between concentrations in muscle tissue and a variety of biological variables are not frequently reported. This contrasts with mercury, which is known to be intrinsically linked to the biology of fish. Consequently, biological variability in fish has the potential to confound studies of mercury and possibly arsenic in fish. This thesis examines the influence of biological variables and fishing region on total mercury and total arsenic in Sebastes alutus from British Columbia. It also assesses the concentrations found in muscle tissue from a food safety perspective. Samples were obtained from a commercial fish processing plant on Vancouver Island and had been caught by a commercial fishing vessel in Hecate Strait, Queen Charlotte Sound and the west coast of Vancouver Island. A multivariate outlier determination method was used to quantify the natural background variability across all three fishing regions. Significant differences in concentrations between regions were identified. This spatial variability of total arsenic did not appear to be related to age, body or body size. However, the spatial variability of mercury concentrations appear to be associated with the size and age of the fish sampled. The outlier determination procedure also identified the presence of elevated concentrations of both mercury and arsenic in specimens that were determined to be outliers. Outliers originated predominantly from the west coast of Vancouver Island and exceeded regulatory limits for both mercury and arsenic. In addition to the outliers, estimated quantities of MeHg frequently exceeded Provisional Tolerable Intakes for children and pregnant women. Generalized Additive Models were produced to examine the effect of age, body size (length and mass) and diet (δ13C and δ15N) on concentrations of total mercury and total arsenic in Sebastes alutus within each fishing region. These identified significant nonlinear, qualitative patterns between mercury and body size in two out of three fishing regions. A significant nonlinear effect of age on arsenic concentrations was found. Model results also suggest an effect on arsenic concentrations of organic carbon sources; i.e., fish with stronger links to continental slope or inshore food webs (with relatively enriched δ13C signatures) had greater arsenic concentrations. / Graduate

Management strategies to prevent overfishing while achieving optimum yield vary according to the available data and life history of the fished stock. I evaluated two sets of management strategies for Pacific coast rockfish: strategies to set harvest limits for data-poor stocks, and strategies intended to protect the age structure of fished stocks. Setting Harvest Limits for Data-poor Stocks - The collapse of canary rockfish, Sebastes pinniger, in the northeast Pacific began more than two decades before the stock was officially declared overfished. The 2006 reauthorization of the Magnuson-Stevens Fishery Conservation and Management Act requires a scientifically-based harvest limit for all fished stocks, including those with data limited to catch. Two such "data-poor" methods are currently in use for the management of west coast stocks, depletion-corrected average catch (DCAC) and depletion-based stock reduction analysis (DB-SRA). To evaluate the performance of each method when challenged with catch and biological uncertainty, I retrospectively applied the methods to the catch and biological data available at the time of the first and second canary rockfish stock assessments in 1984 and 1990. In 1980 canary rockfish would be classified as "data-poor", and in 1990 as "data-rich". To evaluate the sensitivity of DCAC and DB-SRA to error in the catch data, harvest limits were estimated using both the historic catch data from each assessment, and the reconstructed catch data from the most recent stock assessment. In addition, harvest limits were estimated using simulated catch data sets for the years 1916 to 1983 with increasing variability around the true catch. DCAC and DB-SRA estimated harvest limits were significantly lower than the catch recommended in both the data-poor and data-rich stock assessments, but higher than the "true" overfishing limit. Use of current catch data improved the estimated harvest limit when the stock was data-poor, but not when the stock was data-rich. The simple methods responded to increasing error in the catch time series with decreasing mean estimates of the harvest limit, indicating that these methods are highly precautionary for this species, when the catch time series is the only source of error. Age Structure Management Strategies - In a variable oceanographic environment, a population with many reproductive age classes benefits not only from the increased fecundity of older fish; but also, in some species, an increase in larval fitness. Older females may also spawn at different times or over longer periods than younger females, increasing the probability of larvae encountering favorable environmental conditions. Despite the accumulating evidence for the importance of age structure to long-term population viability in harvested fish populations, long-lived west coast rockfish (Genus Sebastes) are managed with a biomass-based harvest control rule. I compared three strategies for age structure management, and evaluated the strategies relative to the status quo, biomass-based harvest control rules, across three rockfish life histories. I examined the tradeoff between yield and traditional management reference points, as well as performance measures that could serve as management reference points for age structure. Yield was reduced by strategies that maintain "old growth" age structure, but annual variation in the catch and the probability of becoming overfished were also reduced. The longest-lived rockfish benefited the most from strategies that maintained older fish in the population through dome-shaped selectivity. The shorter-lived rockfish benefited from adjustments in the catch limit based on the age composition of the catch one year previous. Achieving "pretty good yield" with management strategies that also decrease the potential for overexploitation is an important goal for stocks that are well-studied and those that are poorly understood; these investigations contribute to a growing literature on alternative approaches to sustainable fisheries management. / Graduation date: 2012

The nearshore waters off the Oregon coast (< 73 meters) are a region of high productivity and economic value, with a variety of habitats that include rock outcrops. Temperate reef habitats are important to many commercially important fishes inhabiting the Pacific coast, including canary rockfish (Sebastes pinniger) and yelloweye rockfish (Sebastes ruberrimus), which are currently listed as "overfished" by the Pacific Fishery Management Council. Along the Pacific coast of North America, nearshore rocky reefs have been designated as essential fish habitat (EFH), while comprising approximately just seven percent of Oregon's territorial sea. Despite this EFH designation, the use of visual (SCUBA, remotely operated vehicles (ROVs), human occupied vehicles (HOVs)) and non-visual (bottom trawl) survey methods within this region has been infrequent and scattered, providing limited information on species-habitat associations and species assemblages within nearshore waters. It is logistically difficult and costly to survey nearshore reefs. The factors that have led to the paucity of surveys include the depth (too deep for SCUBA surveys but too shallow for larger survey vessels), high seas limiting available days for field work, and the high-relief nature of the habitat (precluding the use of bottom trawls). In an effort to better understand species-habitat associations and community structure of Oregon's nearshore reefs, an autonomous underwater drop-camera termed the "video lander" was employed at the Three Arch Rocks reef, a nearshore reef off of Oceanside, Oregon. Video lander footage was used to identify and groundtruth habitat types, as well as species assemblages over two distinct seasons: spring/summer (n=272) and winter (n=108). Many species-habitat associations were statistically significant: yelloweye rockfish (large boulder p<0.0073), canary rockfish (small boulder p<0.0006), kelp greenling (Hexagrammos decagrammus) (bedrock outcrop p<0.0162), and quillback rockfish (Sebastes maliger) (large boulder p<0.0016). Summer and winter surveys revealed similar habitat associations and distributions for these species. I found no significant difference in species composition between the northern and southern regions of the reef (Bray-Curtis dissimilarity index (BCDI) = 71.71, ANOSIM p>0.1447), but a significant difference between spring/summer and winter seasons was identified on the outer section of the reef, due to the presence of spotted ratfish (Hydrolagus colliei) in the winter (BCDI =76.41, ANOSIM p < 0.0155). My study shows that data provided by the video lander can fill existing gaps in our understanding of nearshore distribution and habitat associations of temperate rocky-reef fishes off the Oregon coast. / Graduation date: 2013

Zhou Liran. / "June 2003." / Thesis (Ph.D.)--Chinese University of Hong Kong, 2003. / Includes bibliographical references (p. 182-216). / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Mode of access: World Wide Web. / Abstracts in English and Chinese.

Rockfish are commercially and recreationally important, yet due to the in habitat depths at which rockfish inhabit, little is known about their ecology. As a consequence, management of rockfish population as a fishery resource is a work in progress. In particular, changes in physiological condition aver the course of the year is poorly described. This study examined 19 different species of Sebastes from the Southern California Bight over four seasons (late summer, fall, winter, and spring) using metabolic enzyme assays. Enzymes used were lactate dehydrogenase (LDH), malate dehydrogenase (MDH), pyruvate kinase (PK), and citrate synthase (CS). Some muscle composition data (percent water, percent protein, percent lipid, and protein as a percentage of wet mass) were also used to help interpret the enzyme data. Enzyme activity was lowest in the summer when expressed as activity per gram wet weight but when it was expressed per gram protein the trend was reversed. We found that the rockfish tend to have the highest protein as a percentage of wet mass (P%WM) in the spring right before the upwelling period begins and have the lowest P%WM in late summer after the peak of upwelling. Their metabolic poise (represented as CS/LDH) grouped according to locomotory habit (benthic or bentho-pelagic). A mass and oxygen consumption plot also showed that the species group according to locomotory habit. With those known to be benthic grouped together and those species that are known to more actively swimming had higher values. This knowledge could be used to infer whether a rockfish that hasn't been well studied is benthic or bentho-pelagic.