Thesis (M.Sc.)--Memorial University of Newfoundland, 2005. / Bibliography: leaves 55-62.

Since 1986 patients with ocular malignant melanoma have been treated with Ru-106 plaques at S:t Erik Eye Hospital. In 1998 I-125 radioactive seed plaques was presented as an alternative to Ru-106 when treating tumors with an apical height greater than 7 mm. Until June 2005 the doseplanning of these plaques was based on a depth-dose curve made in the dose planning system Cadplan supplied by Varian Medical Systems. In the recent years the capabilities of computerized 3D dose planning system has increased greatly. The number of types of seeds on the market has also increased. In order to implement the modern 3D dose planning system Brachy Vision 7.3.10 in planning the I-125 plaques, a review of the dose planning process have been done. The ultra sound equipment used by the ophthalmologist to determine the apical height of the tumor has been investigated in terms of accuracy. A phantom has been developed for this task. As new seeds entered the market a comparision have been made comparing the Amersham 6711 seed with the Bebig I25.S06 seed. A method for measuring the activity of the single seeds has also been developed. The dose planning system Brachy Vision 7.3.10 have been compared to the old dose planning method, and an implementation of the plaques into Brachy Vision have been made. The ultra sound equipment was accurate in the regions of interest. It was also discovered that the Bebig I25.S06 seed gave slightly higher dose compared to the Amersham 6711 with the same activity. The difference between the seeds is however small. The results indicate that the old dose planning method gave a slight underdosage.

Tomato has been genetically modified for providing properties such as insect-resistance or delayed-ripening. Tomato seeds purchased from several bazaars and markets were screened for the presence of genetic modification by targeting NptII kanamycin resistance, Nos terminator, and 35S promoter gene regions which are the most commonly transformed gene regions in transgenic plants, and then ripening-delayed tomato seeds were tried to be identified in this study. F type truncated-PG gene and Sam-k gene were selected as the indicator of genetically modified ripening delayed tomatoes. DNAs of 25 seed samples were isolated by CTAB method and examined with several primer pairs, and the primer sets that provided consistent results were selected to conduct routine testing by PCR analysis of the samples. In screening analysis via conventional PCR, 4 samples were amplified with 35S, Nos and NptII primer sets. Among other samples, 3 of them were amplified with 35S and Nos primer sets and 2 of them were amplified only with 35S primer set. The amplification was observed with Nos, NptII and Sam-k primers in one sample and this sample was identified as 35 1 N, since the sequence result of the PCR product amplified with Sam-k primers showed high homology with the Samase gene of T3 Coliphage. F type truncated PG gene was not observed in any of the samples. Although this study demonstrates the presence of commonly used gene regions in genetically modified tomatoes, further analysis of the genetically modified ripening delayed tomato seeds via construct specificor event specific PCR techniques is needed for confirmation.

This study examined modifications made by Pogonomyrmex barbatus, by their processes of granivory and nest construction, to forb and grass dynamics under large-scale disturbances of fire, recent drought and long-term, large-mammalian herbivory using comparative studies, field experimental manipulations, and a simulation model on the Edwards Plateau, Texas. Ant nests are refugia for grass survival during extreme droughts as demonstrated during the drought of 1998 to 2002. Significantly greater cover of grasses and lower abundance and cover of forbs was found beside nests compared with surrounding habitat throughout the drought and recovery. Grasses near nests may be the seed source for surrounding habitats during recovery. Seeds were differentially collected among most forbs and grasses despite seed abundance. Harvest was significantly reduced in the fall relative to spring. During preference experiments, harvest differences were found between grazing treatments for two of four species, but only during the spring. High lipid content seeds were unpreferred in fall compared to high protein and carbohydrate content seeds. Granivory influences on seedling establishment were studied by comparing seedling recruitment among sown and naturally occurring seeds excluded and open to foragers. Exclosures were placed in three nest densities and two burn treatments. Seeds in exclosures produced significantly more seedlings than open arenas only during the first year of drought recovery. Densities of grasses and annual forbs were higher in open arenas the second year due to indirect effects of granivory. By reducing seeds ants release seedlings from competition. Sown seedling abundance was unaffected by colony density and fire. Colony density and distribution were influenced by topography, soil types, soil depth and woody cover, but not by historical grazing treatments. Cleared vegetation on nest disks impacted less than 1% of total surface area and losses were compensated by greater basal cover of grasses next to disks compared to surrounding habitats. Foraging areas influenced 17.3-73.6% of surface area and could diminish seed populations for potential seedlings. Model results agree with experimental observations that communities may be modified by P. barbatus presence due to differential responses of grass species to interaction between nests or granivory and rainfall amounts.

No description available.

Prostate cancer continues to be the most commonly diagnosed cancer among men. Brachytherapy has emerged as one of the definitive treatment options for early stage prostate cancer which entails permanent implantation of radioactive seeds into the prostate to eradicate the cancer with ionizing radiation. Successful brachytherapy requires the ability to perform dosimetry -which requires seed localization- during the procedure but such function is not available today. If dosimetry could be performed intraoperatively, physicians could implant additional seeds into the under-dosed portions of the prostate while the patient is still on the operating table. This thesis addresses the brachytherapy seed localization problem with introducing intensity based registration between transrectal ultrasound (TRUS) that shows only the prostate and a 3D seed model drawn from fluoroscopy that shows only the implanted seeds. The TRUS images are first filtered and compounded, and then registered to the seed model by using mutual information. A training phantom was implanted with 48 seeds and imaged. Various ultrasound filtering techniques were analyzed. The effect of false positives and false negatives in ultrasound was investigated by randomly masking seeds from the fluoroscopy volume or adding seeds to that in random locations. Furthermore, the effect of sparse and dense ultrasound data was analyzed by running the registration for ultrasound data with different spacing. The registration error remained consistently below clinical threshold and capture range was significantly larger than the initial guess guaranteed by the clinical workflow. This fully automated method provided excellent registration accuracy and robustness in phantom studies and promises to demonstrate clinically adequate performance on human data. / Thesis (Master, Electrical & Computer Engineering) -- Queen's University, 2008-09-27 12:35:16.691

No abstract available. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2006.

The current state of global biodiversity is one of sustained and increasing decline especially in developing countries such as South Africa, where, medicinal plants face a particular threat due the herbal medicine trade, and because in situ conservation measures have not stemmed the exploitation of these plants (Chapter 1). Furthermore, seed storage, which offers an efficient ex situ conservation technique, cannot presently be applied to many medicinal plants, either because these species produce short-lived, recalcitrant seeds, or the post-shedding behaviour of the seeds is altogether unknown. This study investigated three medicinal plant species indigenous to Kenya and South Africa: Trichilia dregeana and T. emetica, of which no population inventories exist and no wild populations were encountered locally during the course of this study; and Warburgia salutaris, one of the most highly-utilised medicinal plants in Africa, and which is currently endangered and virtually extinct in the wild in some countries such as South Africa. Aspects of post-shedding seed physiology (Chapter 2) and the responses of the germplasm of the three species to cryopreservation (Chapter 3) were studied using viability and ultrastructural assessment, with the aim of establishing methods for both short-term and the long-term preservation, via appropriate seed storage and cryopreservation, respectively. The effect of cryopreservation on genetic fidelity, a crucial aspect of germplasm conservation, was assessed by polymerase chain reaction (PCR) based random amplified polymorphic DNA (RAPDs), using W. salutaris as a case-study (Chapter 4). The seeds of all three species were found to exhibit non-orthodox behaviour. On relatively slow-drying, seeds of T. dregeana and T. emetica lost viability and ultrastructural integrity at axis water contents of 0.55 g g-l (achieved over 6 d) and 0.42 g g-l (after 3 d) respectively, while flash-drying of embryonic axes facilitated their tolerance of water contents as low as 0.16 g g-l (T. dregeana, flash-dried for 4 h) and 0.26 (T. emetica, flash-dried for 90 min). Seeds of W. salutaris were relatively more tolerant to desiccation, remaining viable at axis water contents below 0.1 g g-l when desiccated for 6 d in activated silica gel. However, excised embryonic axes flash-dried to similar water contents over 90 min lost viability and were ultrastructurally damaged beyond functionality. In terms of storability of the seeds, those of T. dregeana could be stored in the fully hydrated state for at least 5 months, provided that the quality was high and microbial contamination was curtailed at onset of storage, while those T. emetica remained in hydrated storage for about 60 d, before all seeds germinated in storage. Seeds of W salutaris, even though relatively tolerant to desiccation, were not practically storable at reduced water content, losing viability within 49 d when stored at an axis water content of 0.1 g g-l. The seeds of all three species were sensitive to chilling, suffering extensive subcellular derangement, accompanied by loss of viability, when stored at 6 °C. Thus, T. dregeana and T. emetica are typically recalcitrant, while those of W. salutaris are suggested to fit within the intermediate category of seed behaviour. For either recalcitrant or intermediate seeds, the only feasible method of long-term germpalsm preservation may be cryopreservation. Subsequent studies established that whole seeds of W. salutaris could be successfully cryopreserved following dehydration in activated silica gel. However, whole seeds of T. dregeana and T. emetica were unsuitable for cryopreservation, and excised embryonic axes were utilised. For these, in vitro germination methods, as well as cryoprotection, dehydration, freezing and thawing protocols were established. Post-thaw survival of the axes of both species was shown to depend on cryoprotection, rapid dehydration and cooling (freezing) in cryovials. Embryonic axes of T. dregeana regenerated only as callus after cryopreservation, while those of T. emetica generated into apparently normal plantlets. Thawing/rehydration in a 1:1 solution of 1 µM CaC12.2H2O and 1 mM MgC12.6H2O increased the percentage of axes surviving freezing, and that of T. emetica axes developing shoots. The effect of the extent of seed/axis development on onward growth after cryopreservation was apparent for seeds of W. salutaris and excised axes of T. emetica. The seeds of W. salutaris surviving after cryopreservation germinated into seedlings which appeared similar to those from non-cryopreserved seeds, both morphologically and in terms of growth rate. Analysis using PCR-RAPDs revealed that there were no differences in both nucleotide diversity or divergence, among populations of seedlings from seeds which had been sown fresh, or those which had either been dehydrated only, or dehydrated and cryopreserved. Thus, neither dehydration alone, nor dehydration followed by cryopreservation, was associated with any discernible genomic change. The above results are reported and discussed in detail in Chapters 2 to 4, and recommendations and future prospects outlined in Chapter 5. / Thesis (Ph.D.)-University of Natal, Durban, 2002.

The zygotic germplasm of plant species producing desiccation-sensitive seeds can be conserved in the long-term only by cryopreservation. Usually the embryonic axis is excised from the cotyledons and is used as the explant for cryopreservation as it is small and provides a large surface area:volume ratio. However the shoot of the axis of most species studied does not develop after excision, with the result that survival after cryopreservation is often recorded as callus production or simply explant enlargement and/or greening. Thus, besides explant size, factors such as in vitro regeneration techniques, physical injury induced upon excision and developmental status of the seed could compromise the success of cryopreservation. This study investigated the effect of the factors mentioned above, with particular attention to the developmental status of the seeds on explant in vitro development (section 3.1), response to dehydration (section 3.2) and cryopreservation of the desiccation-sensitive embryonic axes (section 3.3) of two species: Trichilia dregeana, T. emetica and embryos of a third, Strychnos gerrardii. For all three species, investigations were conducted on the embryonic axes/embryos excised from mature seeds immediately after fruit harvesting and from mature seeds stored under hydrated conditions for different periods (in order to achieve different degrees of development). In addition, preliminary studies were carried out on axes of T. dregeana to assess whether generation of reactive oxygen species (ROS) occurs in response to wounding upon axis excision (section 3.4). Excised embryonic axes of T. dregeana and T. emetica did not develop shoots in vitro unless the explants included attached cotyledonary segments. Following the development associated with short-term storage, however, the excised axes could develop shoots after complete cotyledon excision. The embryos from the (endospermous) seeds of S. gerrardii which included the paper-thin cotyledons, developed normally in vitro, with percentage germination increasing with seed storage time. For all three species, in vitro axis germination was promoted when activated charcoal was included in the germination medium, regardless of the developmental stage of the seeds. When dehydrated to approximately 0.3 g H2O g-1 dry mass (g g-1), embryonic axes from all three species failed to develop shoots even though a minimum of 50% produced roots in all cases. Hence, shoot production was shown to be more sensitive to desiccation than was root production. Furthermore, the sensitivity of the shoot apical meristem to desiccation was not ameliorated with seed storage for T. dregeana and T. emetica, but did decrease for S. gerrardii when seeds were stored for 6 – 8 weeks. The application of certain cryoprotectants did facilitate production of shoots after dehydration by a few axes of both Trichilia spp. For T. dregeana explants, combination of glycerol and sucrose allowed for 10% of the axes to retain the ability for shoot production after dehydration while for T. emetica explants, the combination of DMSO and glycerol (10 - 20% shoot production after dehydration) was best. The efficacy of the cryoprotectants was not influenced by storage period. The provision of cryoprotectants still needs to be tested for S. gerrardii. Survival of subsequent cryopreservation of T. dregeana and S. gerrardii explants was best achieved with rapid cooling in nitrogen slush, with the cooling procedure for T. emetica explants still to be optimized. The highest post-cryopreservation survival of T. dregeana axes was achieved when seeds had been stored for three months, while the seed storage period did not affect post-thaw survival of the axes of T. emetica or S. gerrardii. A small proportion of S. gerrardii explants only, produced shoots after cryopreservation, whereas the surviving embryonic axes of T. dregeana and T. emetica regenerated only as non-embryogenic callus. Although callus production is less desirable than successful seedling establishment, it has the potential for micropropagation if embryogenicity can be induced. Ultrastructural examination of the shoot apical meristem of T. dregeana after a 3-d recovery period, following excision, revealed considerable cellular derangement, although damage of individual organelles could not be resolved microscopically. Preliminary studies on T. dregeana involving a colorimetric assay using epinephrine, confirmed the generation of ROS in response to wounding associated with axis excision. Reactive oxygen species generated appeared to persist over prolonged periods rather than occurring only as a single oxidative burst. Hence, ROS production at the wound site could be the primary factor contributing to lack of shoot development. Axes immersed in the anti-oxidant, ascorbic acid (AsA) immediately after excision, showed lower ROS production and 10% shoot development when cultured in vitro, indicating that the oxidative burst coincident with, and after excision might be counteracted if immediate ROS production can be adequately quenched. Future investigations should aim to identify the specific ROS associated with wounding and optimize an anti-oxidant treatment(s) that will facilitate shoot development. Thus, the successful cryopreservation of the germplasm of the species tested, and others producing recalcitrant seeds, depends on a spectrum of species-specific factors, some still to be elucidated. / Thesis (M.Sc.)-University of KwaZulu-Natal, Westville, 2007.

Woody plant encroachment is a phenomenon whereby trees and shrubs invade grasslands or increase in an already wooded area, resulting in lower yields of herbaceous plants and a reduction in the carrying capacity of rangelands. It is not only the extent of woody plant encroachment, but also the rate at which it occurs, that is a major concern for livestock ranchers interested in herbaceous production. The question of what causes woody plant encroachment still remains unanswered. Animals consume a considerable amount of woody plant seeds during the dry season and could be responsible for spreading undesirable species to new areas or they could enhance the dispersal of species already established. However, under natural conditions, seed dispersal does not guarantee seed germination, which depends on appropriate environmental and seed survival conditions. To better understand the mechanisms involved in woody plant encroachment, we studied the effects of livestock (goats, sheep and cattle), diet quality (high-quality (Medicago sativa hay) vs. low-quality (Digtaria eriantha hay)), seed characteristics (size, shape and hardness), grass competition and fire on germination and seedling recruitment of Dichrostachys cinerea and Acacia nilotica seeds. These objectives were achieved by conducting the following trials: a) recovery and germination of D. cinerea seeds fed to goats, b) diet quality on germination of Dichrostachys cinerea and Acacia nilotica seeds fed to ruminants, c) the effects of gut passage and dung fertilization on seedling establishment of Dichrostachys cinerea and Acacia nilotica seeds and d) the effects of gut passage, dung fertilization, trampling, grass competition and fire on seedling recruitment of the two woody plant species. During the first trial, seed recovery rate of D. cinerea seeds consumed by goats, either voluntarily after mixing them with feed pellets (mixed), or by force-feeding (gavaged) and germination percentage were measured. Seed recovery for the gavaged treatment (32.7%) was significantly higher than for the mixed treatments (9.9%; P < 0.001). Seeds that passed through the digestive tract (mixed (35.5%)) and gavaged (31.2%) treatments) had a significantly higher germination percentage than untreated seeds (19.0%). A non-negligible proportion of D. cinerea seeds remained intact after chewing and passage through the digestive system, and their germination percentage increased. In the second trial, I tested the effects of animal species (goats and sheep, goats and cattle), diet quality (Medicago sativa hay and Digitaria eriantha hay), and seed characteristics (size, shape and hardness) on the effectiveness of animal seed recovery and germination of D. cinerea and A. nilotica seeds. The trial was divided into two experiments. In the first experiment, a significant interaction effect of animal species (goats, sheep), diet (high-quality hay, low-quality hay) and seed species (A. nilotica seeds, D. cinerea seeds) was found on percentage germination (P < 0.0001). There was also a higher percentage seed recovery (P < 0.009) when animals were offered high-quality hay (47.4% + 4.65) compared to low-quality hay (30.2% + 3.24). In goats fed D. eriantha hay, A. nilotica seed germination (9.38% + 3.66) was higher (P < 0.05) than goats fed D. eriantha hay and D. cinerea seeds (6.78% + 1.13). A greater germination percentage was observed in goats fed M. sativa hay with D. cinerea seeds (6.71% + 1.53) than goats fed M. sativa hay with A. nilotica seeds (2.50% + 0.97) (P < 0.05). In the second experiment, animal species had a positive impact, both on seed recovery (P < 0.0325; goats 32.0% + 6.44; cattle 50.3% + 4.27) and germination percentage (P < 0.055; goats 14.1% + 1.48; cattle 9.3% + 0.94; control: D. cinerea 0.64 + 0.06; A. nilotica 0.59 + 0.07). Animal species in experiment one (goats and sheep) and two (goats and cattle) was most important for seed recovery and germination. However, diet (M. sativa hay and D. eriantha hay) and seed species (D. cinerea, A. nilotica seeds) also had important effects on germination of seeds retrieved from experiment one. The interaction of animal species and size, diet quality, and seed characteristics (size, hardness) all played a major role in recovery of viable and scarified seeds either alone or in combination. I also studied the effects of seedling emergence, seedling establishment and recruitment of dispersed A. nilotica and D. cinerea seeds by goats and cattle under natural conditions. The interaction effect of animal species, seed recovery day and seed germination treatment/planting method was significant on seedling recruitment. Seeds retrieved from goats in the last four days and planted 2 cm in the soil with dung (25.85% ± 0.46) and seeds planted 2 cm in the soil with no dung (24.77% ± 0.35), recruited significantly better than seeds planted on top of the soil (16.98% ± 0.46). The results also indicated significant differences in percentage seedling recruitment among goats, cattle and control, with goats and cattle having the highest percentage recruitment than controls or untreated seeds. Overall, seeds can potentially germinate and recruit following passage through the gut, thereby facilitating woody plant encroachment. The results of the last trial showed that seed passage through the digestive tract of goats and cattle compared to untreated seeds (i.e. not ingested) played an important role in improving germination through seed scarification. However, seed recovery by livestock does not guarantee seedling establishment survival, survival and recruitment. Fire and grass mowing treatments affected seedling emergence, seedling survival and recruitment, most probably because of reduced grass competition, thereby reducing competition for resources (light, water and nutrients) between grasses and seedlings. In conclusion, this study indicated that animal species (goats, sheep and cattle), associated diet (low-quality vs. high-quality), seed species (D. cinerea and A. nilotica) and seed characteristics (size, shape, hardness) all played an important role in seed germination. The interactions of animal species, fire, dung, and season either directly or indirectly were pivotal in the emergence, survival and recruitment of D. cinerea and A. nilotica seedlings. Thus, acid scarification in the gut of herbivores in combination with their indirect effects (dung fertilization) and removal of grass competition (either by fire or mowing) can facilitate seedling emergence, seedling survival and recruitment of woody plant species, which may lead to woody plant encroachment. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2014.