Abstract The control and maintenance of the character, number and protein, carbohydrates and lipid composition of intracellular compartments in a changing environment is one of the fundamental features of a living cell. It is effected, to a large measure, by vesicular traffic which connects the various cellular compartments and handles the transportation of cargo between them. Movement of cargo occurs through a transport system in membrane-bounded containers called vesicles. Vesicles originate at the donor membrane from which they are transported to target organelles where they fuse with the acceptor membrane and deliver their cargo. At the donor site, cytosolic coat proteins or 'coats' bind to the donor membrane together with GTP (guanosine 5'-triphosphate)-binding regulatory proteins first to deform a bud, which is then pinched off as a coated vesicle. During budding and targeting events, a number of regulatory proteins interact with the coat components. Currently, several different coat proteins and their adaptor proteins are known. The purpose of this study was to characterize novel components participitating in intracellular vesicle transport. By using computer analysis and EST (expressed sequence tag) database searches, a previously unknown protein was found. Sequencing revealed the presence of a novel protein of 613 amino acids with a calculated molecular mass of 67,149 Da. Based on its structural features, possessing both a VHS domain and an "ear" domain, we named the protein Vear. With its VHS domain in its NH2 terminus, Vear shows similarity to several endocytosis-associated proteins. With the "ear" domain in its C-terminus, it resembles γ-adaptin, a heavy subunit of the AP-1 complex. Vear mRNA showed a widespread distribution in tissues, with high amounts of mRNA in the kidney, skeletal muscle, and cardiac muscle. At the subcellular level, Vear was localized to the Golgi complex in which it colocalized with the trans-Golgi marker γ-adaptin. The preferential membrane-association was demonstrated by subcellular fractionation in which Vear partitioned with the total membrane fraction. Golgi-associated subcellular localization for Vear was sensitive to a treatment with the fungal metabolite brefeldin A, suggesting an ARF (ADP-ribosylation factor)-dependent recruitment onto membranes. In transfection studies, the full-length Vear assembled on and caused structural "compaction" of the Golgi complex, while overexpression of the "ear" domain alone showed diffuse Golgi-localization without "compaction". The VHS domain, on the other hand, was mainly vesicle- and plasma membrane associated and did not show any association with Golgi. In skeletal muscle, Vear was detected preferentially in type I cells by immunohistochemistry and immunofluorescence microscopy. In normal kidney, Vear was exclusively present in glomerular epithelial cells (podocytes) and Vear protein was expressed in a developmentally regulated manner during glomerulogenesis. By immunolabeling electron microscopy, Vear was seen in vesicular and membrane structures adjacent to the Golgi complex. Vear was also abundant in the gastrointestinal tract in cells active in secretion. The results indicate that Vear is a novel vesicle transport-associated protein, detected mainly in the Golgi complex and localized in tissues in a highly cell-type specific manner.

La polarité cellulaire est une caractéristique commune à tous les organismes. Jusqu’à récemment, il était assumé que la sécrétion de protéines vers des domaines polaires de la cellule végétale se faisait de façon non polarisée, mais ce point de vue a été re-étudié, la sécrétion est polarisée mais la dynamique, les voies de traficempruntées et les mécanismes sont toujours inconnus. Précédemment, mon laboratoire d’accueil a caractérisé un enrichissement en sphingolipides contenant des acides gras à très longues chaines (VLCFAs) au niveau d’un sous-domaine du trans-Golgi Network (TGN) appelé Vésicules de Sécrétions (SVs). Plus précisément, il a été montré que la longueur des acides gras des sphingolipides jouait un rôle critique dans la sécrétion du transporteur d’auxine PIN2 des SVs vers des domaines polaires de la membrane plasmique. Pendant ma thèse, je me suis intéressé à la question suivante : comment les sphingolipides agissent-t-ils au TGN? En identifiant le protéome des SVs, ainsi qu'en utilisant des outils génétiques et pharmacologiques en combinaison avec la visualisation de marqueurs lipidiques, j'ai pu identifier que les sphingolipides agissent sur l’homéostasie des phosphoinositides en mettant en avant un lien fonctionnel entre ces deux classes de lipides au sein de la cellule végétale. En utilisant un set de marqueurs des phosphoinositides (PIPs), j’ai pu montrer que les sphingolipides ciblent principalement le phosphatidyl-inositol-3-phosphate, PI(3)P et le phosphatidylinositol- 4-phosphate, PI(4)P. De plus, mon analyse protéomique a montré que la localisation d'un ensemble de protéines liées aux PIPs était diminuée dans les SVs/TGN immunopurifiées quand la composition des sphingolipides est altérée. Mes résultats nous forcent à revoir notre vision de la dynamique des lipides au niveau des membranes, et suggère l’idée que la dynamique de remodelage de la composition d’une classe de lipide, les phosphoinositides, peut être modulée par une autre classe de lipide, les sphingolipides. / Cell polarity is a defining feature of all organisms. Until very recently, it was thought that delivery of proteins to polar domains of root epidermal cells plasma membrane was non-polar, but this view has been re-examined, the delivery is polar but the dynamics, the paths taken, and the mechanisms are unknown. My host team previously characterised an enrichment of Very-Long-Chain-Fatty-Acids (VLCFAs)-containing sphingolipids at the site of secretory vesicles (SVs) sub-domain of the trans-Golgi Network (TGN). Moreover, the length of sphingolipids acyl-chain was found to play a critical role in secretory sorting of the auxin carrier PIN2 from SVsassociated TGN to apical polar domain of the plasma membrane (PM). During my PhD, I addressed the following question: how sphingolipids act at SVs/TGN? Using proteomics of SVs, genetics and pharmacological tools in combination with visualisation of lipid probes we could identify that sphingolipids act on phosphoinositides (PIPs) homeostasis establishing a new functional link between these two lipids in plant cells. Using a set of multi-affinity fluorescent PIPs probes I could show that sphingolipids target phosphatidylinositol-3-phosphate (PI3P) and phosphatidylinositol-4-phosphate (PI4P). Moreover, my proteomic analyses show that several PIPs-related proteins are downregulated in immuno-purified TGN-associated SVs when the sphingolipid composition is altered pharmacologically. My results force the reassessment of our view of lipid membranes dynamics and highlight the idea that dynamic remodelling of the composition of one lipid class, the phosphoinositides, can be modulated by another lipid class, the sphingolipids.

Mouse polyomavirus (MPyV) is a model virus of the Polyomaviridae family. Polyomaviruses are small non-enveloped DNA viruses. They cause severe problems to immunocompromised patients. Their oncogenic potential is known in animals and humans. Trafficking of MPyV within the cell is not clear yet. The virus enters via smooth monopinocytic vesicles and continues to early and late endosomes. From there, the virus is transported to the ER by unknown mechanism. It bypasses Golgi aparatus (GA). One possible pathway is from late endosomes to trans-Golgi network (TGN) facilitated by Rab9 GTPase and then in COPI vesicles to the ER. In this thesis, the effect of inhibitors of retrograde transport (Brefeldin A, Golgicide A) on MPyV infection was evaluated. Brefeldin A is not completely specific; it has effect on whole endosomal system. Golgicide A causes specific disruption of transport via TGN and GA. Both inhibitors suppressed infection of MPyV. Confocal microscopy revealed colocalization of some MPyV virions with markers of TGN and COPI vesicles. MPyV didn't colocalize with cis-Golgi marker. Unfortunately, the effect of overexpression of Rab9 dominant negative mutant couldn't been evaluated due to its high cytotoxicity. However, overexpression of wild type Rab9 slightly increased infectivity. The results...

The major sorting station of biosynthetic material destined for the cell surface or secretion is the trans Golgi Network, TGN. This organelle sorts proteins and lipids into vesicular transport carriers that are targeted via different pathways to distinct membrane compartments of the cell. The molecular principles that operate in cargo sorting at the TGN are still not very well understood. Especially, we know very little about the sorting of lipids. It was postulated that a sorting mechanism based on clustering of lipid rafts, dynamic membrane domains enriched in sphingolipids and sterols, could be an important part of the picture. My thesis study dealt with the elucidation of the molecular sorting principles at the TGN and their exploitation for cell surface polarity in the yeast Saccharomyces cerevisiae. To this end, we conducted a genome wide screen that identified yeast mutants defective in cell surface delivery of the model cargo protein FusMid-GFP. The most striking result of this screen was that mutant strains with defects in ergosterol (the major yeast sterol) and sphingolipid biosynthesis lost sorting competence. To elucidate a direct role for sphingolipids and ergosterol in cargo sorting and secretion we sought to characterize the lipid composition of secretory vesicles. Hence, we established a vesicle purification protocol based on an immunoisolation strategy. Additionally, in collaboration with the group of A. Shevchenko, we developed a mass spectrometry methodology that allows the comprehensive and quantitative lipid analysis of subcellular organelles. Preliminary results corroborate our genetic evidence. The data show that the vesicles are enriched in sphingolipids and decreased in phosphatidylcholine indicating a role for raft clustering in cargo sorting at the TGN. The studies of cell polarity during yeast mating also unraveled a role for raft clustering. We could identify that the lipid bilayer at the tip of the mating projection was more ordered than at the plasma membrane enclosing the cell body and that this was dependent on sphingolipid synthesis. The results of my thesis suggest that in the yeast Saccharomyces cerevisiae fundamental cell biological processes such as cargo sorting and vesicle formation at the TGN as well as cell surface polarity during mating employ raft clustering mechanisms.

No description available.

Thesis (Ph. D.) -- University of Texas Southwestern Medical Center at Dallas, 2005. / Vita. Bibliography: 106-116.

La peau est un organe se trouvant à l’interface de notre organisme et de notre environnement. Ellesubit un vieillissement qui se traduit par des modifications affectant ses différentes couches. Parmi celles-cile derme est particulièrement affecté. Les fibroblastes, présents dans le derme, synthétisent des moléculesde la matrice extracellulaire ainsi que des enzymes de dégradation. Lors du vieillissement, cette sécrétionest modifiée favorisant ainsi la sécrétion d’enzymes et la dégradation du derme. L’un des objectifs de ces travaux de thèse est d’évaluer les modifications ayant lieu chez les fibroblastes lors du vieillissement. Pour cela, trois modèles de vieillissement de fibroblastes primaires dermiques humains ont été développés et caractérisés. Une étude transcriptomique a été réalisée par PCR quantitative en temps réel et a permis de mettre en évidence des différences d’expression de gènes codant pour des composants du derme. Dans le but de développer des actifs cosmétiques à visée « anti-âge », des extraits riches en polysaccharides ont été réalisés à partir de plantes et de microorganismes, puis leur efficacité a été évaluée sur des modèles de peaux humaines. L’appareil de Golgi est un organite jouant un rôle majeur dans la modification post-traductionnelle et la sécrétion. La modification structurale de celui-ci lors du vieillissement a été évaluée sur les modèles de fibroblastes en utilisant des techniques de microcopie optique et électronique. Les résultats montrent une altération de la morphologie du réseau trans-golgien chez les fibroblastes sénescents, l’un des modèles développés au cours de ces travaux. Chez ces cellules, le TGN présente une morphologie particulière qui s’étend dans le cytoplasme. Ainsi, lors de la sénescence, nous avons pu révéler par le biais d’une étude transcriptomique que l’expression de gènes impliqués dans la structure et la fonctionnalité de l’appareil de Golgi étaient modifiée. Les résultats obtenus lors de cette thèse ont permis de mettre en évidence de nouveaux marqueurs biologiques innovants pour le criblage d’actifs dermo-cosmétiques à visée «anti-âge». / Skin is an important organ of the human body representing a protective structure in direct contactwith the external environment. During aging, skin undergoes dramatic changes including alteration ofdermal cells and components. Among these, fibroblasts synthetize and secrete a large variety ofcomponents and degrading enzymes involved in the modulation of dermal structure and functions. It isestablished that modification of the secreted components and enzymes during aging is related to dermisdegradation. This work aims to characterize aging-related alteration in fibroblasts. For this purpose, three aged human dermal primary fibroblast models have been developed. A transcriptomic study, using real-time quantitative PCR, has also been undertaken and has shown modifications in the expression of genesencoding dermal proteins. Using these results and in order to develop “anti-aging” cosmetic ingredients, extracts from polysaccharides-rich plant and microbial cells have been prepared and their efficiency evaluated on skin explants.As the Golgi apparatus is a major organelle of the secretory pathway, its structural organization has been investigated in fibroblasts using microscopy. The data show a marked alteration of trans-Golgi network morphology in aged cells. In contrast to its small and compact structure in young cells, the trans-Golgi network displays a large and expanded configuration in senescent cells. In addition, a transcriptomic analysis reveals that the expression of some genes, related to Golgi shape and/or function, is significantly modified in senescent cells. These genes could be then, used as innovating targets for the screening of novel dermo-cosmetic products with anti-aging activity.

The major sorting station of biosynthetic material destined for the cell surface or secretion is the trans Golgi Network, TGN. This organelle sorts proteins and lipids into vesicular transport carriers that are targeted via different pathways to distinct membrane compartments of the cell. The molecular principles that operate in cargo sorting at the TGN are still not very well understood. Especially, we know very little about the sorting of lipids. It was postulated that a sorting mechanism based on clustering of lipid rafts, dynamic membrane domains enriched in sphingolipids and sterols, could be an important part of the picture. My thesis study dealt with the elucidation of the molecular sorting principles at the TGN and their exploitation for cell surface polarity in the yeast Saccharomyces cerevisiae. To this end, we conducted a genome wide screen that identified yeast mutants defective in cell surface delivery of the model cargo protein FusMid-GFP. The most striking result of this screen was that mutant strains with defects in ergosterol (the major yeast sterol) and sphingolipid biosynthesis lost sorting competence. To elucidate a direct role for sphingolipids and ergosterol in cargo sorting and secretion we sought to characterize the lipid composition of secretory vesicles. Hence, we established a vesicle purification protocol based on an immunoisolation strategy. Additionally, in collaboration with the group of A. Shevchenko, we developed a mass spectrometry methodology that allows the comprehensive and quantitative lipid analysis of subcellular organelles. Preliminary results corroborate our genetic evidence. The data show that the vesicles are enriched in sphingolipids and decreased in phosphatidylcholine indicating a role for raft clustering in cargo sorting at the TGN. The studies of cell polarity during yeast mating also unraveled a role for raft clustering. We could identify that the lipid bilayer at the tip of the mating projection was more ordered than at the plasma membrane enclosing the cell body and that this was dependent on sphingolipid synthesis. The results of my thesis suggest that in the yeast Saccharomyces cerevisiae fundamental cell biological processes such as cargo sorting and vesicle formation at the TGN as well as cell surface polarity during mating employ raft clustering mechanisms.

O vírus sincicial respiratório humano (HRSV) é o mais frequente agente patogênico da família Paramyxoviridae. Apesar de sua grande importância e impacto em saúde pública, alguns aspectos demandam elucidação. Entre eles, estão os mecanismos de tráfego intracelular de proteínas virais para o sitio de montagem. Baseado nisso, fizemos um estudo de imunofluorescência tentando contribuir para o entendimento da participação da via secretória no tráfego de proteínas estruturais de HRSV que não são glicosiladas: proteínas de matriz (M) e de nucleocapsídeo (N). Pudemos observar que essas proteínas seguem rota similar àquelas que são glicosiladas no Golgi, como a proteína de fusão (F). Ademais, as proteínas M e N, além de colocalizarem com proteínas celulares da via secretória, tais como trans-Golgi network-46 (TGN46) e sorting nexin-2 (SNX2), também influem no recrutamento de proteínas celulares para os corpos de inclusão virais, como mostrado no caso da proteína Glut1. Os dados indicam que proteínas M e N de HRSV seguem pela via endocítica inicial, acumulam-se em corpos de inclusão que seriam fábricas virais e, no caso de TGN46, podem ser incorporadas aos vírus em brotamento / Human respiratory syncytial virus (HRSV) is the most relevant cause of respiratory infection in children worldwide. Despite its importance in public health, some aspects of the mechanisms of the trafficking of viral structural proteins remain unclear. In the present study, immunofluorescence was used to understand how the virus matrix (M) and nucleocapsid (N) proteins, which are non-glycosylated , are addressed to inclusion bodies in Hep-2 cells (MOI=3). M and N proteins followed similar intracellular trafficking routes as compared to the glycosylated fusion (F) viral protein. Moreover, M and N proteins colocalized with two key elements of the secretory pathway: trans-Golgi network- 46 (TGN46) and sorting nexin-2 (SNX2). Viral proteins M and N appear to be involved in the recruitment of cell proteins at the formation of virus inclusion bodies, as shown for Glucose Transporter Type 1 (Glut1). The data suggest that HRSV M and N proteins follow the secretory pathway, initiating in early endosomes, as indicated by the co-localization with TGN46 and SNX2. In addition, these host cell proteins accumulate in inclusion bodies that are viral factories, and can be part of budding viral progeny. Therefore, HRSV M and N proteins, even though they are not glycosylated, take advantage of the secretory pathway to reach virus inclusion bodies. Confocal images suggest that SNX2, which is known for its membrane-deforming properties, could play a pivotal role in HRSV budding

O vírus sincicial respiratório humano (HRSV) é o mais frequente agente patogênico da família Paramyxoviridae. Apesar de sua grande importância e impacto em saúde pública, alguns aspectos demandam elucidação. Entre eles, estão os mecanismos de tráfego intracelular de proteínas virais para o sitio de montagem. Baseado nisso, fizemos um estudo de imunofluorescência tentando contribuir para o entendimento da participação da via secretória no tráfego de proteínas estruturais de HRSV que não são glicosiladas: proteínas de matriz (M) e de nucleocapsídeo (N). Pudemos observar que essas proteínas seguem rota similar àquelas que são glicosiladas no Golgi, como a proteína de fusão (F). Ademais, as proteínas M e N, além de colocalizarem com proteínas celulares da via secretória, tais como trans-Golgi network-46 (TGN46) e sorting nexin-2 (SNX2), também influem no recrutamento de proteínas celulares para os corpos de inclusão virais, como mostrado no caso da proteína Glut1. Os dados indicam que proteínas M e N de HRSV seguem pela via endocítica inicial, acumulam-se em corpos de inclusão que seriam fábricas virais e, no caso de TGN46, podem ser incorporadas aos vírus em brotamento / Human respiratory syncytial virus (HRSV) is the most relevant cause of respiratory infection in children worldwide. Despite its importance in public health, some aspects of the mechanisms of the trafficking of viral structural proteins remain unclear. In the present study, immunofluorescence was used to understand how the virus matrix (M) and nucleocapsid (N) proteins, which are non-glycosylated , are addressed to inclusion bodies in Hep-2 cells (MOI=3). M and N proteins followed similar intracellular trafficking routes as compared to the glycosylated fusion (F) viral protein. Moreover, M and N proteins colocalized with two key elements of the secretory pathway: trans-Golgi network- 46 (TGN46) and sorting nexin-2 (SNX2). Viral proteins M and N appear to be involved in the recruitment of cell proteins at the formation of virus inclusion bodies, as shown for Glucose Transporter Type 1 (Glut1). The data suggest that HRSV M and N proteins follow the secretory pathway, initiating in early endosomes, as indicated by the co-localization with TGN46 and SNX2. In addition, these host cell proteins accumulate in inclusion bodies that are viral factories, and can be part of budding viral progeny. Therefore, HRSV M and N proteins, even though they are not glycosylated, take advantage of the secretory pathway to reach virus inclusion bodies. Confocal images suggest that SNX2, which is known for its membrane-deforming properties, could play a pivotal role in HRSV budding